LOCUS       XM_039087810            1689 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus small integral membrane protein 6
            (Smim6), transcript variant X2, mRNA.
ACCESSION   XM_039087810
VERSION     XM_039087810.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1689
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1689
                     /gene="Smim6"
                     /note="small integral membrane protein 6; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 EST, 2 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 3 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:102552551"
                     /db_xref="RGD:7720946"
     CDS             1135..1326
                     /gene="Smim6"
                     /codon_start=1
                     /product="small integral membrane protein 6"
                     /protein_id="XP_038943738.1"
                     /db_xref="GeneID:102552551"
                     /db_xref="RGD:7720946"
                     /translation="MPMGQMVAPKTIQNEAFWKNPWDVGGLIVIGLFISTLLFFIVFA
                     FVFGSVQKAAWRKDVREEE"
ORIGIN      
        1 tattaataga gacaacagct gtctgctcta agctacgggc ctgagagctc agaccaccag
       61 ctgtacaacc atacgttgct taacttctct gttctctacc tgtaaaactg gagttggtta
      121 tcatcactgc ctcatctgtt cgtatgatgt cacactcaat gttgtgatca gagagacaag
      181 cacagctgct ataacccagt ctgggagcaa acactgagag aggccagtcc agcctgctgg
      241 ctctctcagt gagaacctga gttacctgat gggcacagcc actccaggtt gtacctcaga
      301 ggattaaaat aacagacaga caccctgcat cccagaaact gatactaagt gagccgtgtg
      361 gattagaacc cttcggagga aaaggcccgc tgctctgatc ttacaacggg gcctaaccct
      421 ggccatggca gcaggaccac gaacctaagc tctgaaagga gtcaacagtg gcggtcaagc
      481 tccaagcaag gactgtgtgg tcagccctcc agcttctctc tctaatcaca gaaatagcta
      541 aggtcatgcc tgaggcaggt actgagggga ggctccatgt gataaacctg cagttaatca
      601 tttacccaaa ccacaggaag gaaggaagga aggaaggagg gagggaggga gggagggagg
      661 gaaggaagga gggagggaag gaaggaagga aggaaagaag gaaggaaggg aggctcccag
      721 tgagctctct atgacccagc tcacatcagc gaggctgaca ggtggcccgg gacacggacc
      781 caatcttttt cctcacccta actcagtctg acctctctca aggacttaaa actcaactcc
      841 tacaatgcca tcacagaagg gcagaacact gatggaggaa atgagggagg gagtggcatt
      901 gcctggcaac cagtctagcc cacccttgtt tgctctggtg gcggcagcaa aggtgtggtc
      961 agagaatttg gcaacaccct gggctgccaa cagtaatttc tttgagttgt ggcacagctg
     1021 tggtcaccta gcagtctctt ccttgtggcc ggaaggacaa tcctgacttg ccttgcctca
     1081 gaagactcaa gactgttagc agcaggacca gggcctctgt ctcctctctt ccagatgccc
     1141 atgggccaaa tggtagcccc aaagaccatc cagaatgaag ccttctggaa gaacccctgg
     1201 gatgtggggg gcctgatagt gattggcttg ttcatctcca cactcctgtt cttcatcgta
     1261 tttgcttttg tgtttggctc tgtgcaaaag gctgcgtgga gaaaggatgt gcgtgaagag
     1321 gaatgaccta tctcctcggg ggcctagaag gcagcaggga gagacgggct gacctgctca
     1381 ccccctgcca gcaagtgggc ttccagtacc actggctcaa gagaatctat ggcaaccact
     1441 ggaccttgct taggaattgg tcagttagcc gggtgggaag gctggtctgc tcccatttct
     1501 ggctcccttg ccctgccacc agctgaacac tgtaagcaca tggagaggag ctctgctgta
     1561 cctcagatgg gagcagccat ggctaacaag atcctctgat gtgggtccct gtccaagtag
     1621 ctattttcaa gtccttgaca gagaaggaca caaaatgtca aatgaagtaa aaattccttt
     1681 tcaaaacaa
//
