LOCUS       NM_001163002             896 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus small integral membrane protein 5 (Smim5),
            transcript variant 2, mRNA.
ACCESSION   NM_001163002 XM_001073448
VERSION     NM_001163002.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 896)
  AUTHORS   Bonaldo,M.F., Lennon,G. and Soares,M.B.
  TITLE     Normalization and subtraction: two approaches to facilitate gene
            discovery
  JOURNAL   Genome Res 6 (9), 791-806 (1996)
   PUBMED   8889548
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000010.1.
            
            On Nov 27, 2020 this sequence version replaced NM_001163002.1.
            
            Transcript Variant: This variant (2) differs in the 5' UTR compared
            to variant 1. Both variants 1 and 2 encode the same protein.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR22582416.1452971.1,
                                           SRR26360190.415153.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760393, SAMEA5760433
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-171               JAXUCZ010000010.1  101632966-101633136
            172-319             JAXUCZ010000010.1  101637640-101637787
            320-896             JAXUCZ010000010.1  101638170-101638746
FEATURES             Location/Qualifiers
     source          1..896
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q32.1"
     gene            1..896
                     /gene="Smim5"
                     /note="small integral membrane protein 5"
                     /db_xref="GeneID:689926"
                     /db_xref="RGD:1586374"
     exon            1..171
                     /gene="Smim5"
                     /inference="alignment:Splign:2.1.0"
     exon            172..319
                     /gene="Smim5"
                     /inference="alignment:Splign:2.1.0"
     CDS             193..429
                     /gene="Smim5"
                     /codon_start=1
                     /product="small integral membrane protein 5"
                     /protein_id="NP_001156474.1"
                     /db_xref="GeneID:689926"
                     /db_xref="RGD:1586374"
                     /translation="MAVTDFVEEIRSVGERLLLKLKELPQAEPVELVAFSIIVLFTAT
                     VLMLLLIACSWCCAHCCCSEGRDRKIPVRPRKPR"
     exon            320..896
                     /gene="Smim5"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctgggagctg caccaggagg tgcccgggtg aggagcagct gcctgtcagg caggaaagtg
       61 gcagcgccgg tgaagaagtc aagggtggtg gccaaaggac ttcgaggagg aggtacatag
      121 aggctctgta ctcgggcttc tcttcgtggc cccccaaatc tgagctccca gaaaagcagg
      181 agccctacca acatggcagt cacagacttt gtggaggaga ttcgctctgt gggggagagg
      241 ctgctgctga aactgaaaga actcccccag gcagagcccg tggagcttgt ggccttctcc
      301 atcatcgttc ttttcacagc tactgtcctg atgctgctgc tgatagcctg cagctggtgc
      361 tgtgctcact gctgctgctc tgaggggaga gaccgcaaga tcccagtgag gcccagaaag
      421 cccagatgag ggacaacagc aagaagcctg aaaagaagct ggacaagagc ctgccagtgt
      481 tgtgacaggc taccatcatg gccactttcc tcctccagac agaggtcacc tagccccagg
      541 tatggctctg ccaggtgaca ggagccttat catctggagc cttatcaaag aaacaagtgt
      601 tgctcaatgt gctggtggac acagggctta gctggagcag actgcttccc actcagaccg
      661 tcacctgggt gtcctgctaa gctgaccctt cctaagggct ccatacttca cagctcaggc
      721 ttgtcgggag ctggctcttg gcgctcgctg acttatgcca aagagaaaga agctaatcag
      781 ggactttgtg caatttagta gactcccagc ctcctgctga ggggaggacc gtgtcagtat
      841 tctagtggaa atttgtccgc ttatttccaa gtaaacactt tttggttttg tgttta
//
