LOCUS       NM_001399768            1861 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus small integral membrane protein 43 (Smim43),
            mRNA.
ACCESSION   NM_001399768 XM_039103625
VERSION     NM_001399768.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000002.1.
            
            On Jan 14, 2022 this sequence version replaced XM_039103625.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360190.713129.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760393, SAMN09345238
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            NMD candidate          :: translation inferred from conservation
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-249               JAXUCZ010000002.1  121313843-121314091 c
            250-363             JAXUCZ010000002.1  121313039-121313152 c
            364-1861            JAXUCZ010000002.1  121308579-121310076 c
FEATURES             Location/Qualifiers
     source          1..1861
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q25"
     gene            1..1861
                     /gene="Smim43"
                     /note="small integral membrane protein 43"
                     /db_xref="GeneID:108349997"
                     /db_xref="RGD:11384727"
     exon            1..249
                     /gene="Smim43"
                     /inference="alignment:Splign:2.1.0"
     CDS             22..213
                     /gene="Smim43"
                     /codon_start=1
                     /product="small integral membrane protein 43"
                     /protein_id="NP_001386697.1"
                     /db_xref="GeneID:108349997"
                     /db_xref="RGD:11384727"
                     /translation="MEWKLNLLLYLALFFFLLFLLFLLLFVVIKQLKNSVANTAGTLQ
                     PGRLSLHREPWGFNNEQAV"
     exon            250..363
                     /gene="Smim43"
                     /inference="alignment:Splign:2.1.0"
     exon            364..1861
                     /gene="Smim43"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 accgctcggg cggcgcccag catggagtgg aagctgaatc tgctgctcta cttagcgctc
       61 ttcttcttcc tgctcttcct cctgttcctc ctgctcttcg tggtcatcaa gcagctgaag
      121 aactcggtgg ccaatacagc cgggacgctg cagccggggc gtctgtcgct gcaccgggag
      181 ccttggggtt tcaataacga gcaagcagtg tgacctggct ggcagggtct cagctccaaa
      241 gggattcaga tctatgtcat ctgaacccag gctggtaccc ttgacaggag gtactcagga
      301 cagaaactct tatcacagcc taagaaccct gaaaagctgg gagtggagga aatcttgcaa
      361 aagggtctta tgtggtctcc attgctcccc acaaggagga aacggggagg aaaacggcat
      421 gcctgtctga gtccacttcc ttctcaagag tttctcggtg gccaggacta tgtcaggggc
      481 cactgtcctt taacaacata gacgctactg ccttcaacca aaatccaagc tctctagatt
      541 aggataaagg atcttgggca gacagccaga agtctacact ctagttacaa aggacagttg
      601 tgcagaaagc agtgttcgag aaagatggac ctcctggttc cctcacacct catggttccc
      661 tcacagcccc aagtgatatg gctgagcaga atgacgatgg ctctctccct agttctcaag
      721 aaatgtttgt caggactggc ttcctctctg gccagctggc tccctgtagc aggattttct
      781 aagcaagttg cccggaagcc tgcacatttg tgtgtgttgg gaggtctggg gcttgaggga
      841 gtcttcataa tctcttcatg gagctttggt ataggatcga tcaacataaa ttgttttctt
      901 ttgctccttc ttggtcccct ctctcatgtt ccagttaatt aggttctgtg gtagctaagt
      961 ttgtgcactt gatccctata aaggccatcc gttccataca caaggaaagg cacgctgtgc
     1021 tcagaaaggc tacctctctc ccttctgtga ctccaccctc aatccgggaa tatcccggga
     1081 gatcgcctct ctgcttctac tcagcctacg tactggccaa gccgagggag aagaaacact
     1141 tcccacaccc agagctgtgc aaaagaactt tctgtgatat gaaactgttc tatatctgtg
     1201 gtgcccaata cggcaactac tagtcacacg tgtctagtaa acactgaaat atggctagca
     1261 gggattaaat tgtatttaat ttcacctgag acagccacat ggggctggtg gcttttgtat
     1321 gtacagtaca tatcattctc ttgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgacagc
     1381 tagccatgga ctccacaccc catggtcttc ctttgttctt gcattcagtt tttctccttg
     1441 aggaaaaaaa ataagttaga tctaaattga gaatgttcac atctgcctat tgcctgtctt
     1501 cctgcaccaa atgggatagg tttttgtgat agttgaccat ggagaatatg gcagcgttga
     1561 ctcactacat ccccatgttc ccaggccttt tccctaacca aggtcatgtt gtcttatgca
     1621 gtttagtccg tttcagttca ctttttaata ttgtaaatcc caaatgattg tagtgtgtgt
     1681 ttttcaagat acctaatggt ttatattttt taaggttgtg aataaaaaaa taacaattac
     1741 atgtaactca ggttgtgtgt gtgggtgtgt gtgtgtgtgt gtgtgtgtga tttttagtaa
     1801 cttattaccc aaaccttgtt gtattaataa ggatatgatt aataaatgga aagtgatatt
     1861 g
//
