LOCUS       NM_001399684            2993 bp    mRNA    linear   ROD 26-FEB-2024
DEFINITION  Rattus norvegicus small integral membrane protein 40 (Smim40),
            mRNA.
ACCESSION   NM_001399684 XM_039099234
VERSION     NM_001399684.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JACYVU010000324.1.
            
            [WARNING] On Apr 3, 2024 this sequence was replaced by
            NM_001399684.2.
            
            On Jan 12, 2022 this sequence version replaced XM_039099234.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMEA5760389, SAMN16676807
                              [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-108               JACYVU010000324.1  712821-712928       c
            109-193             JACYVU010000324.1  706635-706719       c
            194-2993            JACYVU010000324.1  702536-705335       c
FEATURES             Location/Qualifiers
     source          1..2993
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /map="20p12"
     gene            1..2993
                     /gene="Smim40"
                     /note="small integral membrane protein 40"
                     /db_xref="GeneID:108349036"
                     /db_xref="RGD:11496771"
     exon            1..108
                     /gene="Smim40"
                     /inference="alignment:Splign:2.1.0"
     exon            109..193
                     /gene="Smim40"
                     /inference="alignment:Splign:2.1.0"
     exon            194..2993
                     /gene="Smim40"
                     /inference="alignment:Splign:2.1.0"
     CDS             2177..2419
                     /gene="Smim40"
                     /codon_start=1
                     /product="small integral membrane protein 40"
                     /protein_id="NP_001386613.1"
                     /db_xref="GeneID:108349036"
                     /db_xref="RGD:11496771"
                     /translation="MAEEEGGVEEGDIFLAFAHGPTPPRGPLRRALDKIFLTFLVLFL
                     TLLMLEAAYKLLWPLPWTKFRDWLLRTPEEESALEL"
ORIGIN      
        1 acacaatggt cttacgaaaa ttgacacaaa gttacacttt agcaaaagtc ctagagacct
       61 aagagcaagg agtgatttgg agagagaatt aaagccaagg agtatgagtg aaagggtgga
      121 agagagaacc cacaaaatac caaagaccag ctacgcccta ccatgctggg acaccttgcc
      181 ttcaatttaa cagagtctat tgactgtaaa cttgctgctt atatgtacgt gtgcttatgt
      241 ccgatccctg gcacccagcg tcctggacag aaataaaact ggactatttg gaatattttg
      301 gaagtgtgcc cgaattggcg aacgtaagag tccttatgtc gccatatgct gtatagtgat
      361 ggccttcagc atcctcttca tacagtagct ttggaaacta ccagcacgtg attgccatca
      421 gactgcacac aggacttgcc tccagaaaat aacggggaga atggttacgc ctcttgtctc
      481 tgaacatgga atgagatgaa tttcgagatg ctgttctctc tttttatgct attggaccaa
      541 cggactgtat gaataatcac gatgtaacag gaaatacata ggaacgtgat tgcagccatc
      601 gacctcggtt ctctcactcc agtattacgc tctacaaacg tcatcctgtt acgccaggac
      661 tgcttttcct aaggttctcc aggcacgaag tagaaaccca gtggccagtt ccacaggctt
      721 gcttctttga ctagggcttc aaaataatgt cttcacattg tgataccttc tagcgactgg
      781 cctattttta cttagaaaag aaaatggatc tatttttgtt gttgccattc ttaggaattg
      841 cattcatatt taaacccttt tgattgctaa ccagagtacc tctattcttg gcaaattctg
      901 tactttatta caggtgttta aagtagttta aacaaaactc catttcttta attagcgtaa
      961 gagttggact tctggtcaca aatgtagagc tgccgtccta cgaaggagag tatcttataa
     1021 tgacaaaagc ggcaagcaga atgatgactg aatatgcatt atacattttt cgttctctgt
     1081 ggtgttaagt cttccaaata gaacatccat tgtagttacc aaaaaaaaaa aaaaaaaaaa
     1141 aaaaaaacaa aacattaata acaacctgta aatacacaga gcagaatctt aatgtcaccc
     1201 accatattgt cctgccaggc ttctctacct gtccgtccag tctcttcctt caaacttctc
     1261 tcccgcccat ccttccttct catccaatga caggcctcct atcctgtacc tgcccctcac
     1321 ctgtatttta caaactctat ggggagaagg ttctggtgaa gtcacctgag tcctgagtac
     1381 tgactaggca gcgtcccggg gcagtggaat tagcatcaaa atacagacaa ctcccgggca
     1441 aaccacaatg cccggcctgc agaggcatct cctaaccccc acaccattcg gtgcccccac
     1501 caagcttatt ccttccctcc cttatctttt tatacaagga acataacact cattgatcct
     1561 gatcctcctg cctcagcatc ctgaaggttg gggatttcgg gcttgtgcct ggtcaggttt
     1621 tatgtagtca cccacagaaa cctgacagga gggaagtagc ctgcttgggc taagtgatcc
     1681 taaccccctt cttgatctgg ggttagagga cacaacccca ccctgacctg ttgttatagc
     1741 tgctcacttc tccctcagag aagccccaaa cagactcttg aggtcagaaa tgcctgtcca
     1801 ttacctgtcc atcccaatta aggtctctat aaatatatat atacatacac acacacacac
     1861 acacacacac acacacacac acacacactc tcacactgta gctgtcttca gacacaccag
     1921 acgagggtat cagatctcat tacaggtggg ttgtgagcca ccgtgtggtt actgggaatt
     1981 gaactcagga cctctggaag agcagccagt gctcttaacc gctgagccat ctctccagcc
     2041 ccctactctt gggttcttga attagggtca aacccagcag ctgcaggatc atcacaacca
     2101 cgccctttaa tcccccgaag tgctgagcca ggccttccgt cccctcaagg agccagccag
     2161 ctgtctggct gtgaaaatgg cggaggaaga gggcggtgtg gaggaggggg acatattcct
     2221 agcattcgcc catggtccca ctcctcctcg gggtcccctg cgtcgtgcct tggacaagat
     2281 cttcctcact ttcttggtcc tcttcctgac cctgctgatg ctggaggctg cttacaaact
     2341 gctgtggccc ctgccttgga ccaagtttcg ggactggctc ctcaggaccc ctgaggagga
     2401 gtcagctctg gaactgtgaa caccatctta cagacaacct gtcctgccta ctgaggtgag
     2461 aaaggagatg ttagagagtt tggggtggag gagatagtta aggccgtcac tctaagatta
     2521 tctttatctg cccgtttgtg ggtacgtgca cgtgagttca ggggcccaca gaagctagag
     2581 gggtgttaga gtcctagggg gtagaattac aggaggctgt aagtgacctg aagtgagcgg
     2641 gtgcgtggaa ccaccctcag gtctgcaaca cacacacaca cacacacacc cctaccttta
     2701 tagacaaaag gcatataaat ataactccag aacccacata tgagagaata gcaaggaata
     2761 attaaataag ctattcgaag ggaaaaatta attttatttt atttcgcttc agagtgagtt
     2821 tcatttcctc ttgtgttctt gcaaatattg tggtggtttt ggttttcttc ctagctgtaa
     2881 gactccatag tgtgtccgtc cgtaccacat tctgttttac gggcccgttg gctgcttccg
     2941 ttcctttgga ctacttcgag cactacagca ataaacgtgg ctgtgcgagt gtc
//
