LOCUS       NM_145088               4417 bp    mRNA    linear   ROD 27-MAR-2024
DEFINITION  Rattus norvegicus small integral membrane protein 38 (Smim38),
            mRNA.
ACCESSION   NM_145088 XM_346566
VERSION     NM_145088.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4417)
  AUTHORS   Chiou,S., Yoo,J., Loh,K.C., Guzman,R.C., Gopinath,G.R.,
            Rajkumar,L., Chou,Y.C., Yang,J., Popescu,N.C. and Nandi,S.
  TITLE     Identification of rat mammary tumor-1 gene (RMT-1), which is highly
            expressed in rat mammary tumors
  JOURNAL   Cancer Lett 174 (1), 45-55 (2001)
   PUBMED   11675151
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Dec 2, 2020 this sequence version replaced NM_145088.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AF308611.1 [ECO:0000332]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-260               JAXUCZ010000001.1  209801010-209801269 c
            261-460             JAXUCZ010000001.1  209800636-209800835 c
            461-603             JAXUCZ010000001.1  209800365-209800507 c
            604-679             JAXUCZ010000001.1  209799939-209800014 c
            680-4417            JAXUCZ010000001.1  209795854-209799591 c
FEATURES             Location/Qualifiers
     source          1..4417
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q42"
     gene            1..4417
                     /gene="Smim38"
                     /gene_synonym="Rmt1"
                     /note="small integral membrane protein 38"
                     /db_xref="GeneID:246306"
                     /db_xref="RGD:628800"
     exon            1..260
                     /gene="Smim38"
                     /gene_synonym="Rmt1"
                     /inference="alignment:Splign:2.1.0"
     exon            261..460
                     /gene="Smim38"
                     /gene_synonym="Rmt1"
                     /inference="alignment:Splign:2.1.0"
     exon            461..603
                     /gene="Smim38"
                     /gene_synonym="Rmt1"
                     /inference="alignment:Splign:2.1.0"
     exon            604..679
                     /gene="Smim38"
                     /gene_synonym="Rmt1"
                     /inference="alignment:Splign:2.1.0"
     exon            680..4417
                     /gene="Smim38"
                     /gene_synonym="Rmt1"
                     /inference="alignment:Splign:2.1.0"
     CDS             1247..1402
                     /gene="Smim38"
                     /gene_synonym="Rmt1"
                     /note="mammary cancer associated protein RMT-1"
                     /codon_start=1
                     /product="small integral membrane protein 38"
                     /protein_id="NP_659556.2"
                     /db_xref="GeneID:246306"
                     /db_xref="RGD:628800"
                     /translation="MASWLGDTPGPDPLMVLLVVILLVRFILWSCLGTYMDYRLARPQ
                     PGKPKEE"
ORIGIN      
        1 cgactttatg cttgccaaca ctcagaggca tatgagtggg aaggaagggt caggcctcct
       61 tgaccccaga gtctcctgtg tcttgatgcc atgttacctg ggacaatatt gactttccct
      121 atctgatggt gtgcctgaca aacacagagc tttgttcaag gccaccttag ttccaccagt
      181 ggtgggtccg agctggtggc caagctcggg gcagacgctt cagcttccga gaaagcctta
      241 ccggagatgt gaactctcag ctgtatctgg ctcctaactt ctacatcctc ccttacattt
      301 ggagcgaaag aaaagtaaac ccaagaatgt ttcaagaatg atgtcctgag agtgttgggc
      361 tgggtggcct gacaagtcac cccatacact gcaaagtggg agacaacctt ggtcagtccc
      421 agggatgcac cagccgcagc atgagaggca gtggacacag aaaggctctg cggggtgaat
      481 actcttaatg ccacggagga aagagttcag tactagtgag aggcgaccag cgacgctcta
      541 caggagttct ccgtgtggaa gatgccccct tgcatctctc atggcttatt ggactgattc
      601 ctgagcaggg ggctctgacc tcattcccag cgaggagcct gaggtctaag gaagcaagca
      661 tcttccgcac caccactcat ctccctgccg ccctccctgc tgggccgggc ctccctgcaa
      721 gcctcgtggc ccccgctcgg tgcgggcctg ctgctgctgc tacacagccc gcccagcctc
      781 ggaccgcgct ggcctccaga agtgatagct aattggggag agaaagggct cgattgtctg
      841 cggcagccgg aaaggcccgg aggaggcggc cgcttcgccc tgcagctgcc gccgccggag
      901 atgtttgggg attacgtcag cctggcgggc aggggccgcg gggacagcgc gggaggcgag
      961 ctcccgcagg cctcccgccg ccagggcctc tggacaatgc tgccattgtc ggtgcacgga
     1021 gtgcttagct ccccatgaat ggtacacggg cctcttgacc aaggaggccg cctatagccc
     1081 caactgtccc ctcacaggcg gggaggccca gtgcagtggg aagggctggc tgcgggctgc
     1141 acggatctgt ccctcagaag gggccaccgg caggcaggca gggctgagat caggcctcag
     1201 cgaggctgct gctgctgtac cctgtgtggt agactccctc ctcagcatgg cctcctggct
     1261 gggggacact cccggccctg acccactcat ggtgctcctg gttgtcatcc tcctggtacg
     1321 cttcattctg tggtcctgcc tggggaccta tatggactac aggctggccc ggcctcagcc
     1381 tggcaaaccc aaagaagagt aagccaaggg gcacagagga gacccaaccc tggaagtttt
     1441 gcactatggc tctaccatcc ttctgtgggt gggcaggagg tagtgagtgc cacagacacc
     1501 ttcctgttac tctcctttgc catggtctgt ctccacacct gcccccaaga gacctctagt
     1561 ttgggctaac ctccctagcc cttcaccagc caggcaggca catgatcctt acgtcctatc
     1621 cagcgtgctg aaaccagaga gcagtagaag agacagaggt tcagggagtc ccagaacctg
     1681 cccatattag ttaggaccat ccccatagga gggtgtttgc ctacacaggc tgtcaaagaa
     1741 accactgtta ccaggttcca gaaccccatg attgtgtgtc ccctaggaaa tgcctgactc
     1801 tccccaatct ctaattcttt gtaagaggct gaagttgtgt ggtgaagcca caaggacagc
     1861 tgtgaccatt gctcccaagg ccagtgcttt catggatctc caatgtccta accagtcact
     1921 ggatgcagac agctgcctca gtttccccga gaagacctta gggaagggtc tcaagatggt
     1981 ctcatgagat ggggtttgag cccagctctt tggcctggag accactcttt gcctatcgga
     2041 accttggttt cccaccttgg ttctcatgag aggaacctat ggggttggtg atgtgacttt
     2101 cgagacgctg tgttcttttt gaagactcac ctggcccacc caggtggcgt tggacggaag
     2161 gagagagttc agagctcaca cacgtgtgca tatgtgcatc ccctgtgcat gagggatcca
     2221 acgctgttga gaagacagct ggagatgggg ttctgccaac cttatgtgac tccccggtac
     2281 cgtggccatg gtcaatagac cctgtttttt cctttgaacc aaattgtgta gcaagatgtc
     2341 tgtgggcatt cgaggctaca gtgtgtaagt tctgagattt ggcatggact tgcttctact
     2401 ttgccctctg tggcacatgg tttagggctt catggcctgc aagaaggctg cgaccacttc
     2461 agagacttta cgtggcctcc atggacagag acgggacaat agagatggaa agcgatcctt
     2521 aaggaacccc aagtttgcat ctcatgatcc agaattatgt catagtgtct tagcctcatg
     2581 actgtcgttg cgataaatac tgtgggctca gctcatagtt ccacatcagt ccatgaaggc
     2641 tgagaagcct ctggcaggag cgtgaggcgt ccactcccaa tatgcctgga gctggaggag
     2701 gacgaacagc atatgtccct cctgaactct gccactggcc tgggccactc ttttctgtta
     2761 tggcctttgg ggactggttt gggtactttg gtgtctctgt ggcccctggg cactggcttt
     2821 atctttatga gaaccttagg atggtagata tgtcaaactt tggcatcttc ctggcttgcc
     2881 ttggttcctt ggaggggtct tcaaaaaaat gtctcagtca tttgggtgtg gtggcacata
     2941 cttgctatcc cagcacttgg gagggaaaag caggaagatc agaactttaa ggtcatcccc
     3001 agctacttag tgagttcagg ctgtagcatg aaataacaaa agtgcaccat ctcatgctat
     3061 gactggctac cctctggccc tggtgctctc actgcctcca gggcctccaa gcatccatgg
     3121 caggtcacgg cctagccagc ttcacggttc caaattccag tggctggctg ggctgcccca
     3181 ccatggtacc tttctctgga actcagttga gtggctgtgt gaaggaaaac accacacaaa
     3241 cttagtttag aatcaacagg taactcaatc gctgggcaca gcagctaaca tcctaatttt
     3301 gtaagctatt ctaaatgtaa ctccaatcct ggcagatcta aactggggcc tcttagctac
     3361 attttgcctt tgtgggcttg ggatacatga gaccttgttt caaatcaatc aatcaatcaa
     3421 tcaatcaatc aatcaaacaa acaaacaaac aaataaacaa aaccagaacc tccactccta
     3481 acaaaagtcc gagcaccaaa gtttccagat gaggcagata tgcctttgtc tgagaccttt
     3541 gtgaggatgc ccctgtgctc atggctggca ggccttgaca cagacacacc gaaggaggca
     3601 aatggtagag aatggcagct ggtctgtgag gggattttgt tactggatgt atagtatttt
     3661 tctgaatccc catgttggaa ttttcatccc tagtgcgctc agcacctgaa agtggaggca
     3721 gtgaatgaga tgtgaagcta aatgaggtca catgacctgg tccctaaccc tgagatcaca
     3781 tggcgtagtc cctaaccccc gagagactgg tgtcctcaga gataaaagag cctagcatac
     3841 agcctgtgtg tgtccagagg gcaagcactt gaggaggcag ggacaatatg ctgtctgcag
     3901 gccaaggaga gaggcctcag gagaatttag cctgggacac ttccacctgg gacttctggc
     3961 catcagcatg tgaggtaagc ctcccatttc aggacttcca ccttgaactt ctggcctcca
     4021 gcatgtagtg taagcctccc atctgaggtg ctctgaattg attaacacat aaaccaatgg
     4081 acggagtcat cagtatgaca agggatcacc gagtgctccc agcccaggaa tctccacgac
     4141 tgtgatgtgg gctcagcata gcgctggcct acaggtggat tgggtctggg agtcagaggc
     4201 agggcagaaa gttctggaaa cagagagcag cctgaacatg ttcatgtagc tacagaccac
     4261 taaaaattgt ggccagagca aattttgata catagtatat gtgacctcaa aggctggctg
     4321 ccttagactc tgtcatagca catcagaaat gtcttcatgt gtgttctgca gaaaaatggt
     4381 ggcaatttgg acacattgaa ataaaatgta aaagtcc
//
