LOCUS       XM_006242974             517 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus small integral membrane protein 35
            (Smim35), mRNA.
ACCESSION   XM_006242974
VERSION     XM_006242974.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006242974.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006242974.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 26% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..517
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..517
                     /gene="Smim35"
                     /note="small integral membrane protein 35; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 ESTs, and 82% coverage of the annotated genomic
                     feature by RNAseq alignments, including 34 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:102546809"
                     /db_xref="RGD:7587328"
     CDS             1..351
                     /gene="Smim35"
                     /codon_start=1
                     /product="small integral membrane protein 35"
                     /protein_id="XP_006243036.1"
                     /db_xref="GeneID:102546809"
                     /db_xref="RGD:7587328"
                     /translation="MDSLIRSGRERKVGREVVRGFGTGDVRMHGFSAGEDSISTLGMI
                     LGVGLSLLLVSILGYSLAKWYQRGYCWDGPNFVFNLYQIRNLKDLEVGPPFTISGHMS
                     SPDGGYMRFSNERV"
ORIGIN      
        1 atggactcct tgatccgcag cgggagggag aggaaagttg gaagggaggt ggtgcggggc
       61 tttggcacag gagatgtgag gatgcatggc ttctccgcag gcgaagactc tatcagcaca
      121 ctgggcatga tccttggagt gggactgtca ttgctgctcg tgtccatcct aggctacagt
      181 ttggccaagt ggtaccagcg cgggtactgc tgggacgggc ctaactttgt cttcaactta
      241 taccaaatcc ggaacctgaa ggatttggag gtggggccac ccttcaccat cagcggccac
      301 atgagcagtc cagatggtgg ctacatgagg ttctccaatg aaagagtctg acggaaaagc
      361 ttctagcttc tgaagatcag gagaggttca gggtgatgtc tcccaggcac ctggtctgct
      421 caggcttccg tgaccatcat aatcatctcg atgcttcttg aactgccttc acctgcattc
      481 aagtgcttct ttgacatgaa tggaaaagtt ctgctca
//
