LOCUS       NM_001277209            2502 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus small integral membrane protein 15 (Smim15),
            transcript variant 1, mRNA.
ACCESSION   NM_001277209 XM_002725888 XM_002729013
VERSION     NM_001277209.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2502)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000002.1.
            
            On Nov 27, 2020 this sequence version replaced NM_001277209.1.
            
            Transcript Variant: This variant (1) represents the longer
            transcript and encodes isoform 1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC104707.1, FM091405.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-31                JAXUCZ010000002.1  41261710-41261740
            32-177              JAXUCZ010000002.1  41263596-41263741
            178-2502            JAXUCZ010000002.1  41264546-41266870
FEATURES             Location/Qualifiers
     source          1..2502
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q14"
     gene            1..2502
                     /gene="Smim15"
                     /note="small integral membrane protein 15"
                     /db_xref="GeneID:100359861"
                     /db_xref="RGD:2324600"
     exon            1..31
                     /gene="Smim15"
                     /inference="alignment:Splign:2.1.0"
     exon            32..177
                     /gene="Smim15"
                     /inference="alignment:Splign:2.1.0"
     exon            178..2502
                     /gene="Smim15"
                     /inference="alignment:Splign:2.1.0"
     CDS             203..427
                     /gene="Smim15"
                     /note="isoform 1 is encoded by transcript variant 1;
                     mCG51409-like"
                     /codon_start=1
                     /product="small integral membrane protein 15 isoform 1"
                     /protein_id="NP_001264138.1"
                     /db_xref="GeneID:100359861"
                     /db_xref="RGD:2324600"
                     /translation="MLDVKAWAEYVVEWAAKDPYGFLTTVILALTPLFLASAVLSWKL
                     AKMIEAREKEQKKKQKRQENIAKAKRLKKD"
ORIGIN      
        1 cggcttccgc tttccacttt cctgccttgc gctcatccat gtatatgtat atatagaatt
       61 tagccgtctc caaagcgtat ggtcaaactg aagaaggcat aaccaataat catctgaatt
      121 gtgaatgact cattgataat cccagaggaa aattagagat cactactcta acataagccc
      181 cagtgtcttg cttgctgcaa agatgcttga tgtgaaggct tgggctgagt atgttgtgga
      241 gtgggccgca aaggacccat acggcttcct taccacagtt atcttggcgc tcacaccact
      301 gttcctagct agtgctgtac tgtcctggaa gttggccaag atgattgaag ccagagagaa
      361 ggagcaaaag aagaaacaaa aacggcaaga aaacatcgca aaagctaaac gactaaagaa
      421 ggattgaagg ggtgaacaga ctgcagctag agaaaacaac ccctctggaa agggctgcag
      481 ctttggaagg actctcacca agcttccagt tggttcttga tagtattatt tagtaaactg
      541 aatctgaccg tgtagaagag tcatgttctg acctccatgc taccataact ttcaggcttg
      601 gaaataaaag tttgttggta tgtactgaca agcatttaag ttagcattta tcatacaggt
      661 ggagcatacc taatgtgaaa aatctgaagc tcagaagcac tgtaaaatct aacacctgtg
      721 ctcagacacg atgccaagag tggaaaagcc cacagcccac ttcgtgatgg gttgcagtca
      781 aaatacaggt gcgctaaaaa tacataaagt tatcttccag ccacgagaaa tacaagcgga
      841 ccttgtgttt agatttggat cccatcctca aggtattatg gaatactttt aaagtctggg
      901 aaaaaaaaat taaaacattc cagttccaaa gcatttttgt ctgttcaacc tgtagtaaaa
      961 attctttaaa ctgacagtca tttgccattt tggagcttga agtactcagt gaaaaatgat
     1021 gagaaaatgg tttagattat ggatcctatt taaacagtag tttaaatggg gttcagttct
     1081 ggacagagga tattagggat gtaaaagaat taaccttctg aggtgaaaag tttactttgg
     1141 cttaaaagag atacagtcta ttaatcactt tttcagaatc attagtgctt attttttgga
     1201 atggaagcat tactttctca aaggaaaatt ttattaatga gtgtggctat tttccttctt
     1261 ctgactttag tttttaacac agctggtaat tatcaagaca ctgcatttca aaacctaatt
     1321 ttatatagga ttcttattac cttgacctta ccagtagcat ctcctggata gaatttttgt
     1381 actttgaaca ctgccatttg cttaaatgtg ttgctaagag taacgtgctg tagagccagc
     1441 agtgcaaatg ccttgtgctg ctgatacctt gggctcagtt ttaaatgtga aactgttaaa
     1501 tgtcaccaga ttattacctg atcacaacca gcacagtagt gatggtccca ttactgttta
     1561 cttaccatag gttcaaagtg aaaatcaaaa tttcaaattt atgaagtcct acttcataat
     1621 ttaaaccact aagagtttaa atttggagcc atttccatgg gtgtaactgg ttgcagggac
     1681 tgcagtcaag aaggacaaag ctggggacct tccaggtata atacagacac gagactgaga
     1741 catagctttt ctaaatgcgt ggtcgagcaa cactcgttgc aggatttaat tgcttgttac
     1801 tgttttctgc acctctggta attttaagtt tcaataattg tcagtcttaa taaaaatgag
     1861 actaaatatt gaaataaatt tgatacattt ttataaagag gtcctgagtt tttgtctgtt
     1921 ggagggagga gtatttattt taaattacag atgtcctgca agttaatggt tcaaaaagac
     1981 aatgaatttc aggcatagct aaatgtgcta gaaataggat agtttctcag aaatcaagga
     2041 ctcctgagaa tgctgatgga ccagctgttt tctttaggtt attagctcct ggttggtccc
     2101 accttcagct tcaggcacta aaatcaccag gtgatcctga ttgtattaca tttatgtaat
     2161 aggtattata tgatcgaaat tataaaactt gcttataaag aatcatgggc ctccatagat
     2221 cttcagatct tccacagttt gcatgtcact aagttcacag aaactttcag tatattttat
     2281 tgccacgttt tactgtggag ttcaaatact gaagcaaaaa caataacaat aacttagcca
     2341 ctaaagagga ggtaatttaa aggtatgtat ttaactaaaa gtctggtttc ttaatatacc
     2401 ttaatgcctt aatgtggcaa ttttgtattt gatgtaaact attatttctt caacattgga
     2461 gacgttttgt atgtatgaga tcaacaaata tttaaactat tg
//
