LOCUS       XM_039092247            3790 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus small integral membrane protein 14
            (Smim14), transcript variant X3, mRNA.
ACCESSION   XM_039092247
VERSION     XM_039092247.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051349.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039092247.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3790
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3790
                     /gene="Smim14"
                     /gene_synonym="RGD1311122"
                     /note="small integral membrane protein 14; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 70 ESTs, 7 long SRA reads, 8 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 100 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:364154"
                     /db_xref="RGD:1311122"
     CDS             64..363
                     /gene="Smim14"
                     /gene_synonym="RGD1311122"
                     /codon_start=1
                     /product="small integral membrane protein 14 isoform X1"
                     /protein_id="XP_038948175.1"
                     /db_xref="GeneID:364154"
                     /db_xref="RGD:1311122"
                     /translation="MAEGGFDPCECICSHEHAMRRLINLLRQSQSYCTDTECLRELPG
                     PSGDSGISITVILMAWMVIAVLLFLLRPPNLRGSSLPGKPSSPHSGQDPPAPPVD"
ORIGIN      
        1 aaagccgggc ggtggcgttt gcctggtttg aagagttgag tacaaccaag ctggtaacca
       61 accatggctg aaggaggatt tgatccctgt gaatgtattt gctctcatga acacgctatg
      121 agaagactta tcaatctgct ccggcagtcc cagtcctact gcaccgacac agaatgcctt
      181 cgggaattgc caggaccctc cggcgacagt ggcatcagca tcactgtgat cttgatggcc
      241 tggatggtga tcgccgtgct cctcttccta ctcaggcctc ctaacctgag aggctccagc
      301 cttcctggaa agccctccag tcctcacagt ggacaggacc cgccggcccc tcctgtggac
      361 taacatcctg gtgtgggaag cagtgattga caccctgcac gaccgaacga ctgaagatga
      421 ccaggcacta actgtctctc cttttccatc tgccgtttgg atggtattgt tttcatgagc
      481 ttgtagaaat ttcacttgcc aactgccttt tgcttcctgt gttgccacag ttcttattta
      541 cagtatacct gagtaaatga ttttattgaa aagttgaggg ctgtgttggt tggcctgagc
      601 ttaaacattc cattcattct ccctggaacc ctgaccgtag ggtctgtggt ggtttctggc
      661 ccaactgaag gaaaattaag atttctgcat ttaagattct attttaagtg gttttgatag
      721 actttaattc ttttcataaa gtatttattt ggggttgtct ggtatgagtg acagagccac
      781 gctgtagtca cttactgtgg cagtttatct gtgggtggca gttttctgta gtccttgacg
      841 gtgacgcttc agaacatttt ccttacaaag tccagctggc ttatatggct agaataggaa
      901 aatcgaattg gttgtttact gatttttttt taaattccca ttaaagattt gatgttaaga
      961 atactttaaa taaacatgat tgattaatat aatggttggc ttagaatcca ttgtgtgtca
     1021 ttgaaagcca ctgtatgcta gccttatcgg ctcctggtat ttgtctgtca agtgggtgcc
     1081 tcttcagcaa gcttctcttg tgtcctaaca cttccctgtt cagtgaaatc tccttatgtc
     1141 tgtatgtgag gctgacattt taatacctat gacttaattt cattcctttt ttttaaatta
     1201 aaaaaaaatg agtcttttgt tgcctttctg gcttgtgagg agaaaacctt taatctgagg
     1261 tcttggttta ttccaaggga aaggaggaaa atgacaaacc agaatatttt gtcacctctc
     1321 agctcagttc tgtttagtgt cacagtgcag attcgtcgga gttggaagga gcattggtaa
     1381 ctgaaacgtt aaaaatgtgt ttaaccagta agaggttcag aagcagtgaa tacaaactgc
     1441 attcaaacag gcctggacgg ccagctggcc tgaactcttc taggagtcac agcaggcgat
     1501 tagtcgggac cagaacatat cttgttaact aggtaaggct gacccctcct cggtcagtct
     1561 aggctgttac tatatggagt tcagaaatgt tttgtgtgga ctaaataaac gtctacaaca
     1621 ttgcaccaca ggcaggcctg ggacccaccc cattgtgtgc cattctgctt attcccccaa
     1681 gcactggtta tcaagatctg gcccataagc atcgttaagg gcatctcttt gtcctgtatg
     1741 gtaatcctgg ctacttacgc tcttcctagc tcacttggct ttgtgctcca cacttaaaaa
     1801 ataatctaac cacctctcag ctacttgtat ctataaggag tgattaacca ggtaagttaa
     1861 tcctgaacaa atgaacaaca cagggtgaag gatttctctc ttgctgtggt cacccagaag
     1921 tcttacctgc ttcatagcct gtagccagtt taacacaaaa gccagatatg gtagcagtct
     1981 tgagaccaga ctaggctaca cggtaaattt cagatcaggt tgggctacat gggaagacct
     2041 tggcttacaa aggaaaaaaa aatggggtga gggacttaac ctgagcaaaa ctggaatggc
     2101 ctcaggtaga gctgaagcgc tgtagcgttt cttctcttgc cctcagcctc tggaggctgc
     2161 acacatccca gcagtgcttt ccaactgctg atggcttcgt gcagtctgct tcactagtag
     2221 ttgagacttt actttggatt aaaataaaat gtccaaggct ggagagatgg ctcagcagtt
     2281 aagagctctg gctgttcttc cagaggaccc aggctcagtt tccagcaacc acatggcagc
     2341 tcacaactgt ttgtaactcc agtttcaggg attctgacac cctcacatgc aggcaaaaga
     2401 ccaatgagca taaaataaga ataaataaat aattttttta atgaagaaaa tgtgggtaca
     2461 gaacatctag cattagagac ctggaagagt agattcttac tctaggtatt cattcctacc
     2521 acatgcagtt agttatgtct aaatatcata gctttttcct atgtaaacct tctgttaagt
     2581 tagtaacaca gcctcagttg ttcttagccc agtaaagatc ttaactttct gacatagaaa
     2641 tggcatttgt accagaagta cgtatgatca cagttgtata gaaaatccga tccagacttt
     2701 gttgttgttg ttgatttgag acagagtttc tctgtgtagt ttctctgtgt agctctggcc
     2761 tcaagctcgg agatcacctg cttctgcctc cctggcttag gagtaaaggc gtgcgccacc
     2821 accgtgcgcc caatccaggc gtttcagtgc ctgttaacag ttgaattcct ctgagaagta
     2881 tttggccttg tgttgtacct ttagtcttgc tatttttgtt ttctttggtg atttattcta
     2941 tattcctaca gtgatgatat cttacataga atattattat caacccagct aatactttgt
     3001 tactctcttc tttaagccga gtctgttcta cagcttcatt tgactcgcaa gccttcactt
     3061 gagccatagc tacagttctc ttagagctca agagaagctt acagtcttga ctttgggcca
     3121 tccacgccac ccagaaagtt cactcgatag ccccttccct tcacgctgtt tcatacaaaa
     3181 tctagtagtt ttgtttttct gttttccata tgggacaggt taacatcggg gctgtttata
     3241 acaaatgatt ttaccatgta tctaaacact gtcccacgct tcagagcaca tgctttacaa
     3301 tgtacagagg ctctccagag tagccattga gcagcactgc cccatggttt catttagcgt
     3361 ctgtgatagc atttatggaa ttaccaatat cttagacttt aaagggattg tgtaagtctg
     3421 tcattctaaa tgaaagtttg tctctctgtg attttgtact taagtttgac cagctcactt
     3481 taaaacacaa aacagcaact cgaagaagga aaatgacaaa tggtttaaat tttgttgttg
     3541 caatagaaga taggaacagt cttacatttc tcagtgaaga atcctgtgta tcattacttg
     3601 tcccatgatt attttgttaa aggaaaaggg gtcatatgat gtactatttc tcaatgttta
     3661 aatcatgcca aacaaatcag cccatgccat ctagcctttg gtgttaatct tttactgagt
     3721 tcttggattg gggttaaggg cttgtactat gcacttttta ttaatgaata aatagaaaat
     3781 gttagtaaca
//
