LOCUS       XM_017593058            1630 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus small integral membrane protein 10
            like 1 (Smim10l1), mRNA.
ACCESSION   XM_017593058
VERSION     XM_017593058.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; corrected model.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_017593058.3.
            
            On Jan 21, 2021 this sequence version replaced XM_017593058.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts          :: corrected 1 indel
            internal stop codons :: corrected 1 genomic stop codon
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-896               JACYVU010000151.1  2658768-2659663
            897-911             JACYVU010000151.1  2661865-2661879
            912-1630            JACYVU010000151.1  2661881-2662599
FEATURES             Location/Qualifiers
     source          1..1630
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1630
                     /gene="Smim10l1"
                     /note="small integral membrane protein 10 like 1; The
                     sequence of the model RefSeq transcript was modified
                     relative to its source genomic sequence to represent the
                     inferred CDS: deleted 1 base in 1 codon; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 ESTs, 1 Protein, and 67% coverage of the annotated
                     genomic feature by RNAseq alignments"
                     /db_xref="GeneID:100360120"
                     /db_xref="RGD:2322729"
     CDS             705..974
                     /gene="Smim10l1"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 1 base in 1 codon;
                     substituted 1 base at 1 genomic stop codon"
                     /codon_start=1
                     /transl_except=(pos:906..908,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: small integral membrane
                     protein 10-like protein 1"
                     /protein_id="XP_017448547.1"
                     /db_xref="GeneID:100360120"
                     /db_xref="RGD:2322729"
                     /translation="MTPAEAPSALALRVVGPAAATPYGVFCKGLSRTLLAFFELAWQL
                     RMNFPYFYIAGSVILNIRLQGFLXNCCVFQASPKLMIPLPLSFDN"
ORIGIN      
        1 gcaaaaagct ggattccata cctaatctga actttttatg ggtttatatt aattggaaac
       61 acaaccatat atacatgtgc taacacacat cctatacaat gggataggga cttatgtcag
      121 ggaaaccggg aaacggagta acatttgaaa tgtaaataaa gagatatcca ataaaaggaa
      181 aaaaaaaaga tcgtgtatat ttgcttaatt tatcacttgc aacctacata gtcctaatat
      241 acaggtggat ccctaaccta atatgatgac ttttcactta cggtgttaca aatgcagacc
      301 ctaagcctat atacgtttat gtaaggtgac tgatcacctt gtcagtgttt cagtaaatgt
      361 tatgggatta aatagcagac actcttattt tcatctacct ttgatctttg caaaatgtgt
      421 actaaatgtt ggttaagtta catcagctca ctgagctctg ccctttaaag ggacagcgga
      481 tctctgtgct gctgtcccta gcagttacat aattgcctgc agccaacctt ccccaggaag
      541 ctgacaggaa gaggcggagc ccacgccgcc cagcgccacc agggagggag cggcggccgc
      601 tgccggtgaa ggctaaagcg gtggccgctt catcccggcc actgctcggt ctggctcggg
      661 actgcgcgga tcttcgggga ccctcggcct ggtctgacaa cgccatgacc cccgccgagg
      721 ccccgtccgc cctggcgctc agggttgtgg gccctgcggc cgccaccccg tacggtgtct
      781 tctgcaaggg gctctcccgc accctgctcg ccttcttcga gctggcctgg cagctgcgaa
      841 tgaacttccc gtacttctac atcgcgggct cagtgatcct caacatccgc ttgcagggtt
      901 tcctctagaa ttgctgtgta ttccaggcta gcccaaaact catgatcccc ctgccattgt
      961 cttttgataa ctgagctatg cccacaatag gcttcatatt tgccaagtga cattttaaat
     1021 gtcactgaag tccccaggtc cccattacta aaatttacag gctaaagaag tactctgaag
     1081 gaaaaaaaaa tagtcaatgc tttattaatg aagaaataca cctgatgttt taaagcatga
     1141 gaaaattcca actgtaatag agcagaaaga atgaccataa agagaaagag ctggaaacat
     1201 acttcagtca gtaaagactg ttctataaaa gcctgaagaa ccaagtttgg tccccagagc
     1261 ctagttagcc aggcttggta gcgtgattgc aaccccagtg ctaaggagag gcagagacag
     1321 gtccctgggg ttctctggtc tagcatcctt ggcaaagttc cagaacattg aaagacagtg
     1381 tttaaacaat aatatgaaca ctgcctgagg acacattcag tgtcgaacct atagatacct
     1441 cccacattat cttcctattg atatcctact ttaattctgt atttttttta atccactgag
     1501 tccagtccac atctaaaaat agggacaata gccatctgct tatagctcct cagctcaggg
     1561 acctaggacc ccttagggcc cccctcctta ttccatgatg gagtcgttga actgtctctg
     1621 gtgtgcaaca
//
