LOCUS       NM_001163723             453 bp    mRNA    linear   ROD 23-MAR-2023
DEFINITION  Rattus norvegicus small integral membrane protein 1 (Vel blood
            group) (Smim1), mRNA.
ACCESSION   NM_001163723 XM_001076945 XM_575969
VERSION     NM_001163723.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 453)
  AUTHORS   Arnaud L, Kelley LP, Helias V, Cartron JP and Ballif BA.
  TITLE     SMIM1 is a type II transmembrane phosphoprotein and displays the
            Vel blood group antigen at its carboxyl-terminus
  JOURNAL   FEBS Lett 589 (23), 3624-3630 (2015)
   PUBMED   26452714
REFERENCE   2  (bases 1 to 453)
  AUTHORS   Storry JR, Joud M, Christophersen MK, Thuresson B, Akerstrom B,
            Sojka BN, Nilsson B and Olsson ML.
  TITLE     Homozygosity for a null allele of SMIM1 defines the Vel-negative
            blood group phenotype
  JOURNAL   Nat Genet 45 (5), 537-541 (2013)
   PUBMED   23563606
REFERENCE   3  (bases 1 to 453)
  AUTHORS   Ballif BA, Helias V, Peyrard T, Menanteau C, Saison C, Lucien N,
            Bourgouin S, Le Gall M, Cartron JP and Arnaud L.
  TITLE     Disruption of SMIM1 causes the Vel- blood type
  JOURNAL   EMBO Mol Med 5 (5), 751-761 (2013)
   PUBMED   23505126
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CB698087.1, CB775577.1 and CB786874.1.
            
            On or before Jul 31, 2009 this sequence version replaced
            XM_575969.2, XM_001076945.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: CB786874.1, SRR8487227.207070.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760434 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-35                CB698087.1         1-35
            36-426              CB775577.1         1-391
            427-453             CB786874.1         425-451
FEATURES             Location/Qualifiers
     source          1..453
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q36"
     gene            1..453
                     /gene="Smim1"
                     /gene_synonym="RGD1564257"
                     /note="small integral membrane protein 1 (Vel blood
                     group)"
                     /db_xref="GeneID:500595"
                     /db_xref="RGD:1564257"
     exon            1..23
                     /gene="Smim1"
                     /gene_synonym="RGD1564257"
                     /inference="alignment:Splign:2.1.0"
     exon            24..147
                     /gene="Smim1"
                     /gene_synonym="RGD1564257"
                     /inference="alignment:Splign:2.1.0"
     exon            148..277
                     /gene="Smim1"
                     /gene_synonym="RGD1564257"
                     /inference="alignment:Splign:2.1.0"
     CDS             168..404
                     /gene="Smim1"
                     /gene_synonym="RGD1564257"
                     /codon_start=1
                     /product="small integral membrane protein 1"
                     /protein_id="NP_001157195.1"
                     /db_xref="GeneID:500595"
                     /db_xref="RGD:1564257"
                     /translation="MQSQESGVHYSRWDSSSRDEVSMSAMSSSEEASCYKRISQKLCS
                     GKLGIAMKVLGGVALFWIIFILGYITGYYVHKCK"
     exon            278..453
                     /gene="Smim1"
                     /gene_synonym="RGD1564257"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agcggcccta gcaagaggca caggctcgag ggaccaacct tacctcacat cctggcttgc
       61 cctgctgggg aaaggtgggg tccgctggcc agaccctgac aaccttcccg agccccggag
      121 gtttcagccc taccacgact cgcttttctc caccccaggc ctacagcatg cagtcccagg
      181 agagtggcgt tcactacagc aggtgggaca gcagcagccg ggatgaagtc agcatgtccg
      241 ccatgtccag ctcagaggag gcctcatgct ataagaggat ctcccagaag ctgtgctctg
      301 gcaagctggg gatagccatg aaggtgctgg gtggagtggc cctcttctgg atcatcttca
      361 tcttgggcta catcactggc tactacgtgc acaagtgcaa ataaatgctg gcccactccc
      421 atcccggggg ataccctctc atgtacacag aca
//
