LOCUS       NM_001004449            2779 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus submandibular gland protein C (Smgc), mRNA.
ACCESSION   NM_001004449 XM_579141
VERSION     NM_001004449.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2779)
  AUTHORS   Culp,D.J., Latchney,L.R., Fallon,M.A., Denny,P.A., Denny,P.C.,
            Couwenhoven,R.I. and Chuang,S.
  TITLE     The gene encoding mouse Muc19: cDNA, genomic organization and
            relationship to Smgc
  JOURNAL   Physiol Genomics 19 (3), 303-318 (2004)
   PUBMED   15340121
REFERENCE   2  (bases 1 to 2779)
  AUTHORS   Zinzen,K.M., Hand,A.R., Yankova,M., Ball,W.D. and Mirels,L.
  TITLE     Molecular cloning and characterization of the neonatal rat and
            mouse submandibular gland protein SMGC
  JOURNAL   Gene 334, 23-33 (2004)
   PUBMED   15256252
  REMARK    GeneRIF: SMGC is expressed in the submandibular gland at high
            levels through postnatal day 20, and secreted SMGC visualized by
            SDS-PAGE and silver staining is 89 kDa; localized on rat chromosome
            7q34-35
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000007.1.
            
            On Nov 27, 2020 this sequence version replaced NM_001004449.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AY459347.1 [ECO:0000332]
            RNAseq introns              :: partial sample support SAMEA5760383,
                                           SAMEA5760389 [ECO:0000350]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-92                JAXUCZ010000007.1  124897424-124897515
            93-224              JAXUCZ010000007.1  124900680-124900811
            225-398             JAXUCZ010000007.1  124901232-124901405
            399-569             JAXUCZ010000007.1  124905400-124905570
            570-662             JAXUCZ010000007.1  124906503-124906595
            663-686             JAXUCZ010000007.1  124910387-124910410
            687-860             JAXUCZ010000007.1  124911632-124911805
            861-923             JAXUCZ010000007.1  124912173-124912235
            924-1094            JAXUCZ010000007.1  124915800-124915970
            1095-1187           JAXUCZ010000007.1  124916906-124916998
            1188-1277           JAXUCZ010000007.1  124918824-124918913
            1278-1367           JAXUCZ010000007.1  124920776-124920865
            1368-1541           JAXUCZ010000007.1  124921685-124921858
            1542-1604           JAXUCZ010000007.1  124922225-124922287
            1605-1727           JAXUCZ010000007.1  124926041-124926163
            1728-1907           JAXUCZ010000007.1  124926593-124926772
            1908-2779           JAXUCZ010000007.1  124926859-124927730
FEATURES             Location/Qualifiers
     source          1..2779
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q35"
     gene            1..2779
                     /gene="Smgc"
                     /note="submandibular gland protein C"
                     /db_xref="GeneID:446171"
                     /db_xref="RGD:1302995"
     exon            1..92
                     /gene="Smgc"
                     /inference="alignment:Splign:2.1.0"
     CDS             41..2065
                     /gene="Smgc"
                     /note="neonatal submandibular gland protein C"
                     /codon_start=1
                     /product="submandibular gland protein C precursor"
                     /protein_id="NP_001004449.2"
                     /db_xref="GeneID:446171"
                     /db_xref="RGD:1302995"
                     /translation="MKLILLYLAVVLCTVCKATSVRGRAGLGTYSRFGLGVLLSGKKT
                     LSAKNSGGNKDDSVSAGGKENSNDALRLGLDGAASVNTNLDASATHRVGGSGSSTTPQ
                     KDERSPFDLIKAILRLQGATSGSSKLSVHSTNDPSAEPGDDPTAQGPQATASSTPKQN
                     VDINLSSAGSATSNDGAPTPREQSSADSLLEESQNLGNESPTEASGSADKPTAHSGKE
                     NSNDALRLGLDGAASVNTNLDASATHRVGGSGSSTTPQKDERSPFDLIKAILRLQGSG
                     KGGSSAETGSSRGRGRGSGATSGSSKLSVHSTNDPSAEPGDDPTAQGPQATASSTPKQ
                     NVDINLSSAGSATSNDGASPAREQSSADPLMEESQNLGNESPTETSGSEDSSNEENLK
                     KVLKAFADRIPQSSTGSSDSADRPNAYSGNSFSGELERIFDSNPTKASVSGKENSNDA
                     LRLGLDGAASVNTNLDASATHHVGRSGSSTTPQKDERSLFDLIKAILRLQGSGKGGSS
                     AETGSSRGRGRGSGNGLMLQDQPAPASGRNDKTVDTSGLSTESAISNEENLSGSGDSN
                     KVSGPSSSAVVSTDSGDDGNLEDKQVPRFNGDERDGENNSDFFGAGSLDTGNTSDSGS
                     HNLSSGSGSSVRSNVSIGAGPSDQNESADLGGSGRVTCAGKTVSGASSVA"
     exon            93..224
                     /gene="Smgc"
                     /inference="alignment:Splign:2.1.0"
     exon            225..398
                     /gene="Smgc"
                     /inference="alignment:Splign:2.1.0"
     exon            399..569
                     /gene="Smgc"
                     /inference="alignment:Splign:2.1.0"
     exon            570..662
                     /gene="Smgc"
                     /inference="alignment:Splign:2.1.0"
     exon            663..686
                     /gene="Smgc"
                     /inference="alignment:Splign:2.1.0"
     exon            687..860
                     /gene="Smgc"
                     /inference="alignment:Splign:2.1.0"
     exon            861..923
                     /gene="Smgc"
                     /inference="alignment:Splign:2.1.0"
     exon            924..1094
                     /gene="Smgc"
                     /inference="alignment:Splign:2.1.0"
     exon            1095..1187
                     /gene="Smgc"
                     /inference="alignment:Splign:2.1.0"
     exon            1188..1277
                     /gene="Smgc"
                     /inference="alignment:Splign:2.1.0"
     exon            1278..1367
                     /gene="Smgc"
                     /inference="alignment:Splign:2.1.0"
     exon            1368..1541
                     /gene="Smgc"
                     /inference="alignment:Splign:2.1.0"
     exon            1542..1604
                     /gene="Smgc"
                     /inference="alignment:Splign:2.1.0"
     exon            1605..1727
                     /gene="Smgc"
                     /inference="alignment:Splign:2.1.0"
     exon            1728..1907
                     /gene="Smgc"
                     /inference="alignment:Splign:2.1.0"
     exon            1908..2779
                     /gene="Smgc"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ccggcacgca gtctctacgc ttaggtccca gatcgtcacc atgaagctga tacttctgta
       61 cctggccgtg gtgctctgca ccgtttgcaa agctacaagt gtcagaggta gagctggcct
      121 cggtacctac tcacgctttg gattgggagt tttgctatct ggtaaaaaga ctctgagtgc
      181 caagaattct ggtgggaaca aagacgacag cgtgtctgct ggaggtaaag agaactcaaa
      241 cgatgcactt aggcttggtt tggatggcgc tgcgagtgta aacactaatt tagatgcttc
      301 tgctacacac cgtgttggag gaagtggatc ttccacaact ccgcagaaag atgagcgttc
      361 tccttttgat ctcattaaag ctattttgag attacaagga gccacaagtg gaagcagtaa
      421 gctgagtgtg cactcaacaa atgatccctc cgccgagcca ggagatgatc ctacagccca
      481 ggggccacaa gcaactgcat ctagtacacc aaagcagaat gtagacatta acttgtcgtc
      541 tgcaggctct gcaacctcca atgacggagc tcccacacct agggaacagt caagtgcgga
      601 ttccttattg gaagaatcgc aaaacctagg gaatgagtcc ccgactgaag ccagtggctc
      661 agctgacaag cctactgcac attcaggtaa agagaactca aacgatgcac ttaggcttgg
      721 tttggatggc gctgcgagtg taaacactaa tttagatgct tctgctacac accgtgttgg
      781 aggaagtgga tcttccacaa ctccgcagaa agatgagcgt tctccttttg atctcattaa
      841 agctattttg agattacaag gtagtggcaa aggtggtagc agtgcagaaa ctggaagcag
      901 cagaggtcgt ggcagagggt caggagccac aagtggaagc agtaagctga gtgtgcactc
      961 aacaaatgat ccctccgccg agccaggaga tgatcctaca gcccaggggc cacaagcaac
     1021 tgcatctagt acaccaaagc agaatgtaga cattaacttg tcgtctgcag gctctgcaac
     1081 ctccaatgac ggagcttcac cagctaggga acagtcaagt gccgatccct taatggaaga
     1141 atcgcaaaat ctagggaacg agtccccgac tgaaaccagt ggctcagaag acagctctaa
     1201 tgaagagaac ctgaaaaagg tcctaaaggc ctttgctgac agaattccac agtcaagcac
     1261 tggttccagt gactcagctg acaggcctaa tgcatattca ggtaattcat tttcaggaga
     1321 attggagcga atatttgaca gcaacccgac taaagccagt gtctcaggta aagagaactc
     1381 aaacgatgca cttaggcttg gtttggatgg cgctgcgagt gtaaacacta atttagatgc
     1441 ttctgctaca caccatgttg gaagaagtgg atcttccaca actccgcaga aagatgagcg
     1501 ttctcttttt gatctcatta aagctatttt gagattacaa ggtagtggca aaggcggtag
     1561 cagtgcagaa actggaagca gcagaggtcg tggcagaggg tcaggcaatg gtctcatgct
     1621 gcaggatcaa ccagcacctg cttctggtag aaatgacaag actgtagaca ctagtggtct
     1681 gtctacagag tctgcaatct ccaatgaaga aaatctgagt ggttcaggtg actccaataa
     1741 agtaagtggg ccaagttcct cagctgtcgt ctccacagat tcaggagatg atgggaatct
     1801 ggaggataaa caagtaccta ggtttaatgg agatgagagg gatggagaga ataacagtga
     1861 cttttttggt gctggaagct tggatactgg aaatacgagt gactcaggga gccataattt
     1921 gtcttctggg tctggaagta gtgtaagaag taatgtttct atcggtgctg gaccttctga
     1981 ccaaaatgaa tctgctgacc ttggtggtag tggcagagtt acctgtgctg gcaagaccgt
     2041 atctggagct tcttctgtgg cttagatatt tagagtcatt tctcatttgg aaaataattt
     2101 ttgaaatcta cttttaaagc aatgatgaaa ataattagca ttcatattca taatttgcaa
     2161 tcaactcagg ctttggaatg attatctact tagttatgat caggtagaag tcttttatct
     2221 tccactggca tgtaaagagc cagggctgtt gtctgtttcc ttatttgtct tctttctaaa
     2281 gtgatttgga ctctgctaca gtggttagtg tttggctcaa tctttatatc ctggatgtag
     2341 agttgattgg ctgggcgatt tttgcagata tgttttggag aggcatagcc atgttcatct
     2401 gtttttgcaa tatcatagga attctacaaa ttgttaagat aatatttgtg actgctcatt
     2461 caatttgata actttcactc ttgggaatta gtaaagaaaa aggcccctta caccttctgg
     2521 aatgagcatt cagaaaaaat ttactattca ttggaacagg atattaggct caatatatga
     2581 ctgcagtgag aaacctaatc aaatgataat gtcattttgt aataaggttg actttctctc
     2641 aggattgact attaatctgc taaaaaaaaa atggctttgt cgtatagtga taaagttgtt
     2701 gtattttagt tgctcttcat ctttgggtat aaaattttat agccatcaca tatttcaaac
     2761 taataaaatt gaaaatatt
//
