LOCUS       XM_039108870            2578 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus single-pass membrane protein with
            coiled-coil domains 3 (Smco3), transcript variant X1, mRNA.
ACCESSION   XM_039108870
VERSION     XM_039108870.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2578
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2578
                     /gene="Smco3"
                     /note="single-pass membrane protein with coiled-coil
                     domains 3; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 EST, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     3 samples with support for all annotated introns"
                     /db_xref="GeneID:108348150"
                     /db_xref="RGD:1560652"
     CDS             785..1486
                     /gene="Smco3"
                     /codon_start=1
                     /product="single-pass membrane and coiled-coil
                     domain-containing protein 3 isoform X1"
                     /protein_id="XP_038964798.1"
                     /db_xref="GeneID:108348150"
                     /db_xref="RGD:1560652"
                     /translation="MAQSDFLYPQNPRRRQEVNRLHQQLLDCLSDCFQVTNKLTGLLN
                     AHLGCRLAFIEMRSDATIKRNCDLIIQAVTKIQKELQKVDEALKDKLEPTLYRKLRDI
                     KERETEKIAIVQKVISVILGEATAAASAVAVKLVGSNVTTGIISKLASVLTHIGTSIL
                     GSIGVAVLSLGIDMVVQAILGAVERTQLQSAIQSYEKHLTEFKAASEKYHHAIAEVTD
                     AVKRQLRCLQQCGHR"
ORIGIN      
        1 agaaagagtc ttccagggag aagaggctga tgagcagact attggattat ccaatcccca
       61 gtcagcgcac aaaccatctc catatgagca acactgtgac gtgaacaggc tgtactatat
      121 attatgggtg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgtgtaacaa ttacaacgag
      181 agagaaagaa gcatgatttc acaggagaac aaggggaagt gcaagggagg gagaggaggg
      241 aggaaaggtt catccaggca cagtcctctg gacctgtgtc ctgttgggaa ggcataagtg
      301 acaaagagca gagcccccat tctggatggg gacccttctg ttcacacttg gctgtatctg
      361 gtttgtattt cctgagaacg taagagaacc acccgcagat gaggcccaac tgcagcagat
      421 ctgaagaaaa cgtatctgga agggttgaga agatggacct cagagctcca accagacaga
      481 gctcacactg aaccggattt gtgcagtttt atggcatttt gaccaggttt ataatcactc
      541 aagttaacac tgcttaggac atcagcaggc tgcattaagg aaacagaagg attctgaaaa
      601 ctaagccagg caggagtggc tctaaaccag atgggcagag ggacccagca gagaccagca
      661 aaccctctgg tcatcacatt ccaccagaag cttccagagg agcccacatg agcacccttc
      721 aacaacactc ccaagcaaca gaggggacgc acacttggaa ccccaacaag agacttgctg
      781 aaatatggct cagagtgact tcctctaccc acaaaaccca aggaggcgac aggaagtgaa
      841 ccgccttcac cagcagctgc tggactgctt gtctgactgc ttccaggtca ccaacaagct
      901 cacaggcctt ctgaatgccc acctgggttg caggctggcc ttcattgaaa tgagaagtga
      961 cgcaaccatc aaaagaaact gtgacctcat catccaagcc gtgacaaaaa tccagaagga
     1021 gctgcaaaag gttgacgagg cactgaaaga caaactcgag ccaacccttt ataggaagct
     1081 tcgggatatt aaggaaaggg aaacagagaa gatagccatc gtgcagaagg tcatttctgt
     1141 catcctggga gaagctacag ctgcagccag tgcagtggct gtcaaactgg tgggctcaaa
     1201 tgtcacaacg ggtataatta gcaagctggc ctctgtgctg actcacatcg ggacttctat
     1261 cctcgggagc atcggagtag ccgtgctcag cctcgggata gacatggtcg ttcaagccat
     1321 cttgggagca gtggagagga cgcagcttca atcagccatc caaagttacg agaagcatct
     1381 gactgagttc aaggccgcct cagagaagta ccatcatgct atcgctgagg tcaccgatgc
     1441 tgtgaagcgc cagttaagat gtctccagca atgtggacac agataaacaa tgtggcatgc
     1501 ttgggtgtta ggacaacgag tgcccaaacc agctgtgttg gaccgtcatg ggataacgct
     1561 ctatccgggt cttaccctgc tgtcagaacc actggggtgt aaaggcatca tagaacagca
     1621 aggcactgcc tattgcttcc tcattgccaa acattcctgc taaatggaga ggccgttccc
     1681 attccctgtt tcaaacatca cttatgtcta ataaatcatt cttaataaca ttggactaga
     1741 cacagacctg tggtcttcaa gtaaaataga catccttccg ttatttttac caccggatta
     1801 aattcaattg tctgtaatct gaaccgatgg caaaaccaca aaaacaacat gttcttcagg
     1861 aatgaaagga agcaatgccc ctgtgaggtt ctactcaaca caacatgtgt ctggatgcat
     1921 ctgggaaagg atcagataat agaaattgtg tctataatgc agttaatatt gatctatctg
     1981 tcatctatca cttcagcagg caaactctcg aatatcttaa taaacaataa ataaagcgga
     2041 gtgacccctg cataaaatat gttagagtga ggaaaaagac tcactcccca ataagaattc
     2101 attggttaaa gaaagtatgt attttcaatt tttcaggggg ataagttcat tttcaatacc
     2161 accaggaagt ggcagctccc tctgccccat aaagcattaa cagacctatg ttaattttca
     2221 cctgaaatca gaaaaagtca aaagctatgg aggccaattg atctaactta atttctgtag
     2281 atgcagcatt tgttttctaa acccttcatc taagtgttct cattgagcca ttttttagag
     2341 tttactttga aagtcatatt atgtaacaat gccgagaatg tctttgttat agctcttttg
     2401 tttttgaagc acaaaaataa tcattggaag aaaatactca gtatatcttt aaaaaaaaac
     2461 aactcttaca gatgaaaaat tgtaactagc cctatgactt ttccaaatat attaatatct
     2521 tgttatcact gcttttataa attagtttca aaatatcaca atttgggtca tcttcaaa
//
