LOCUS       XM_039108893            1332 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus single-pass membrane protein with
            coiled-coil domains 2 (Smco2), transcript variant X2, mRNA.
ACCESSION   XM_039108893
VERSION     XM_039108893.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039108893.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1332
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1332
                     /gene="Smco2"
                     /note="single-pass membrane protein with coiled-coil
                     domains 2; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 EST, 1 Protein, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 5 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:100361371"
                     /db_xref="RGD:2320294"
     CDS             210..1256
                     /gene="Smco2"
                     /codon_start=1
                     /product="single-pass membrane and coiled-coil
                     domain-containing protein 2 isoform X1"
                     /protein_id="XP_038964821.1"
                     /db_xref="GeneID:100361371"
                     /db_xref="RGD:2320294"
                     /translation="MTSLQMRTDGKEHQLTEESSDFLQNVSVTEGAKEVAEMDHISDR
                     PDEKEKLSENLQTDVLYKMDTKKWDGLEEESQHREDPPSKQDEREVTPVCEVPQASPR
                     PPSSDESTPIPDSLVVKLNYWHEKMGLQMKELGAHHVDWLERINNIIQNINSTESTVK
                     SLLTEVISLENQSKNLEDPDQEADIEEKIVEIRRQLKEVNIKLNQVDACKEARELKEK
                     LVERIESFHKEINVLNTKLEMHYKQGSETDSHSSEDVAMEHEEPFILEASPSPSGSPS
                     PPCSAVWKHAVKLLVMVYVVTITGLSCYILFVDATFLFERVLPSVLGHRTMWDLREMM
                     APFLNLEAEDLLPS"
ORIGIN      
        1 ggatggtcac ctcccggaag ccctgagcag gaacatggtg ttaagccagg tctcaccggt
       61 ccgtggaggt cattgctctg gaaggcagcc tgtgtgtcct gtgctgaggg tcataactgg
      121 tgtctgcctc tgattccagc ctccttgtcc tgcccttgga tttgagcact gacgtgtcgg
      181 ctctcacact ggcgaccctc agtgaagaca tgacgtctct gcagatgagg acagatggga
      241 aggaacatca gctgactgag gaaagcagtg actttctcca aaacgtcagc gtgaccgaag
      301 gtgcgaagga agttgctgaa atggaccaca tctcagacag accagatgaa aaagagaaac
      361 tttctgaaaa cctacagacc gatgtccttt acaagatgga cactaagaaa tgggatgggt
      421 tggaagagga gtcccagcac cgcgaggacc caccaagcaa acaggatgag cgagaagtaa
      481 ctccggtttg cgaggtcccg caagcgtctc cgcggccacc gtcttcagac gagagcaccc
      541 cgatcccgga cagcttggtg gtcaagctga actactggca tgagaagatg ggtctacaga
      601 tgaaagaact tggagcccac cacgttgact ggttggagag aatcaacaac attatacaga
      661 acataaatag tacagaaagc acggtgaaga gcttgctaac tgaggttata tccctggaaa
      721 atcagtctaa aaatctggag gaccctgatc aggaggcaga cattgaggag aaaatcgtag
      781 aaattagacg tcaattaaag gaagtgaaca taaagttgaa ccaggttgat gcttgcaaag
      841 aagcccgtga actaaaggag aagctcgtgg aacggataga gagctttcat aaggaaataa
      901 atgtcttgaa cactaagctg gagatgcact acaagcaagg atcagagaca gactcccaca
      961 gttctgaaga cgtggccatg gagcatgaag aaccctttat tctcgaggct tctccaagcc
     1021 cgtcagggtc accctctcct ccctgcagtg cagtgtggaa gcacgcagtg aagctgctcg
     1081 tcatggtcta cgtggtcacc atcactggac tgtcgtgtta catactgttt gtggacgcca
     1141 ccttcctctt cgaaagggtg ctgcccagcg tgctggggca ccgtaccatg tgggatcttc
     1201 gggagatgat ggcgcctttc ttgaatttgg aagcggaaga cttgttaccg tcctaaagat
     1261 cctaagttac tgataactga ctctcttcct ctgcaataaa acatgttcct atagtttagc
     1321 agttagcttg tt
//
