LOCUS       XM_006248472            1080 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus single-pass membrane protein with
            coiled-coil domains 1 (Smco1), mRNA.
ACCESSION   XM_006248472
VERSION     XM_006248472.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051346.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006248472.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006248472.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1080
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="11"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1080
                     /gene="Smco1"
                     /note="single-pass membrane protein with coiled-coil
                     domains 1; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 7 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:498096"
                     /db_xref="RGD:1562500"
     CDS             128..772
                     /gene="Smco1"
                     /codon_start=1
                     /product="single-pass membrane and coiled-coil
                     domain-containing protein 1"
                     /protein_id="XP_006248534.1"
                     /db_xref="GeneID:498096"
                     /db_xref="RGD:1562500"
                     /translation="MNHETTTLISLKEAMKRVDNKLQALDTQFKELDTIKDNLTLRFE
                     HHSKTLASQAAQDEIWTAALALGFTSMELNILYSYVIEVLICLHTRMLQKLPDLVRSL
                     PTLASVLRRKTKNKHIRTVWESILEEYGLRERDVTALCTFFVVHGNKGEHYTANVRRM
                     HIKDVSFMITNMVTNQALQEGLLRAVQIIEKGKAARTPETSRAPLKELMPPVKG"
ORIGIN      
        1 tttagatggg ataacccccc ttgccgctgc ctgttgctga gtggaaaaca gcagaagatt
       61 tgggatctca acctccacag agtattcatc gggctgtgtt ttgtttcctt tccttttcct
      121 aaagaagatg aaccatgaaa ccacaaccct gatatccttg aaggaagcaa tgaaaagagt
      181 agacaacaag ctccaagctc tagacacaca gtttaaagaa ctagacacca tcaaggataa
      241 tctgacactt cgatttgaac accacagcaa gactttggca agccaagcag cccaagacga
      301 gatatggaca gcagctctgg ccctggggtt cacctcaatg gaactgaata ttttatacag
      361 ctatgtcatc gaggtcctca tttgcttgca cactcgaatg cttcagaagc ttccagacct
      421 ggtgagaagt cttccgactt tagcctctgt tcttagaaga aagaccaaga acaagcacat
      481 tagaactgtg tgggagtcca tcctggagga gtatgggctg cgagagagag atgtcacagc
      541 actctgtacc ttctttgttg tacatggaaa caaaggagaa cactataccg ctaatgtaag
      601 acggatgcac atcaaagatg tgtccttcat gatcaccaac atggtaacga accaggctct
      661 acaggagggt ctgcttagag ctgttcagat catcgagaag gggaaagcag caaggacccc
      721 tgaaacctca agggctccgc tgaaagagct gatgccccca gttaaaggct aacctgttac
      781 ctctgaccca gcagttcccc tttcagtcat ttgtattgta aaaacaacaa aaaatgcata
      841 ctttaatttt ttttatttat atgagtacac tatagctgcc gtcagacaca ccagaagagg
      901 gcatcagatc ccattacagt tggttgtgag ccatcatgtg gttgctggga attgaactca
      961 ggacctctgg aagagcatct ctccaaccat ctctccaacc ctactttaat ttttataggc
     1021 ttattttata gcaaaagtgg aaggactgtt aaataaatta tgacaaattg atacaatgaa
//
