LOCUS       XM_039086956            2832 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus SWI/SNF related, matrix associated,
            actin dependent regulator of chromatin, subfamily d, member 2
            (Smarcd2), transcript variant X1, mRNA.
ACCESSION   XM_039086956
VERSION     XM_039086956.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2832
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2832
                     /gene="Smarcd2"
                     /gene_synonym="BAF60b"
                     /note="SWI/SNF related, matrix associated, actin dependent
                     regulator of chromatin, subfamily d, member 2; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 42 ESTs, 6 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     64 samples with support for all annotated introns"
                     /db_xref="GeneID:83833"
                     /db_xref="RGD:69289"
     CDS             284..1939
                     /gene="Smarcd2"
                     /gene_synonym="BAF60b"
                     /codon_start=1
                     /product="SWI/SNF-related matrix-associated
                     actin-dependent regulator of chromatin subfamily D member
                     2 isoform X1"
                     /protein_id="XP_038942884.1"
                     /db_xref="GeneID:83833"
                     /db_xref="RGD:69289"
                     /translation="MSGRGAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPNPALRG
                     PGPSGGMGVPGAAAFRPMGPAGPAAQYQVRKAGGRRLEGAGLVSQGPQRPGMSPGSRM
                     PMAGLQVGPPAGSPFGTAAPLRPGMPPTMMDPFRKRLLVPQAQPPMPAQRRGLKRRKM
                     ADKVLPQRIRELVPESQAYMDLLAFERKLDQTIARKRMEIQEAIKKPLTQKRKLRIYI
                     SNTFSPSKADGDNSGTAGTPGGTPAADKVASWELRVEGKLLDDPSKQKRKFSSFFKSL
                     VIELDKELYGPDNHLVEWHRMPTTQETDGFQVKRPGDLNVKCTLLLMLDHQPPQYKLD
                     PRLARLLGVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFRQIFSCGRLRFSE
                     IPMKLAGLLQHPDPIVINHVISVDPNDQKKTACYDIDVEVDDPLKAQMSNFLASTTNQ
                     QEIASLDVKIHETIESINQLKTQRDFMLSFSTEPQDFIQEWLRSQRRDLKIITDVIGN
                     PEEERRAAFYHQPWAQEAVGRHIFAKVQQRRQELEQVLGIRLT"
ORIGIN      
        1 accgcctctg ggtaactgga ctcccgcgat caaacctccg gaggccggga gaggcctgcg
       61 ggcttgcagc acatcctgga tctggagtat ccctggcagg agcggagtca gaggggctgc
      121 ggatcctaaa gctgggctgg gaagaacttg cgaacttgga atagaagatc ccggaacccg
      181 gtaataaaat cggaaagtcc cggatcgcgg aacagagctc gcggagcgga ctcaacacgg
      241 agacgagagg ccggatcgct gcaccgcggg acgggacaga gtgatgtcgg gccgtggcgc
      301 gggcgggttc ccgctgcccc cgctgagccc cggcggcggc gccgttgccg cggccctcgg
      361 tgcgccgcct ccgcctgcgg gacccggaat gctgcccaac ccggcgctca ggggcccggg
      421 gccttctgga ggcatggggg taccgggggc cgctgccttc cgccccatgg gccccgcggg
      481 ccccgcggcg cagtaccagg tgaggaaggc aggcgggcgg cgcctcgagg gcgctgggtt
      541 ggtctcccag gggcctcagc gacctggcat gtccccagga agtaggatgc ccatggctgg
      601 cttgcaggtg ggacctccgg ctggttcccc atttggcaca gctgctccac ttcgacctgg
      661 catgccacct accatgatgg atccattccg aaaacgcctg cttgtgcctc aggcccagcc
      721 cccgatgcct gcccagcgcc gagggttaaa gaggaggaag atggcagata aggttctacc
      781 tcagcgaatc cgggagcttg tcccagagtc tcaggcatac atggatcttt tagctttcga
      841 gaggaagctg gaccagacca tcgctcgcaa gcggatggag atccaagagg ccatcaagaa
      901 gcctctgacg caaaagcgaa aacttcggat ctatatttcc aatacattca gtcccagcaa
      961 ggcagatggt gataattcag gaactgcagg gacccctggg ggaaccccag cagcagacaa
     1021 ggtggcctcc tgggagcttc gagtagaggg aaaacttctg gatgatccta gcaaacagaa
     1081 gaggaagttc tcctcattct ttaagagcct tgttatcgag ttggacaagg agctgtatgg
     1141 gcctgacaac catctggtgg agtggcatcg gatgcccacc actcaggaaa cagatggctt
     1201 tcaggtgaaa cggccaggag atctcaatgt caagtgcacc cttctgctca tgctggatca
     1261 tcagccacct cagtataaac tggacccccg cctggcgagg ttgctgggag tgcacacaca
     1321 gacgagagct gccatcatgc aggcgctgtg gctttacatc aaacacaacc agctgcagga
     1381 tgggcatgag cgggagtaca tcaactgcaa ccgctacttc cgccagatct tcagctgtgg
     1441 ccggctccgt ttctccgaga tccccatgaa gctggctggg ctgctgcagc atccagaccc
     1501 cattgttatt aaccatgtca ttagcgtgga ccctaatgac cagaagaaga cagcctgtta
     1561 tgacatcgac gtagaggttg atgaccccct gaaggcccag atgagtaact tcctggcctc
     1621 taccaccaac cagcaggaga ttgcctctct tgatgtcaag atccatgaga ccattgagtc
     1681 catcaaccag ctgaagaccc agagggactt catgctcagc ttcagcaccg agccccagga
     1741 cttcatccag gaatggctcc gctcccaacg ccgagacctc aagatcatca cagatgtgat
     1801 tggaaaccct gaggaggaga gacgagctgc tttctaccac cagccctggg ctcaggaagc
     1861 agttgggagg cacatctttg ccaaggtgca gcagcgaagg caggaactgg aacaggtgct
     1921 gggaattcgc ctgacctaac tgctcaggga ttgcttcctt ccttccctgc cctggaacct
     1981 ggcaggagac cacctcgtgg tcatggctgg ggctgcagac atacaggatg gagtgaggtg
     2041 tatctcctgt caccctctac tccccagctt tagtttcata agtgtagttt tagagtcctc
     2101 actgcttggt ccccaaagcc ttattactta ccttttagca ctggctttaa ttaggtttgc
     2161 aacgtgctgc ctcagccccc tgcaggcagg cccaggtagg actgctggag gctgtgcttt
     2221 taactttgta acagacattt ccgaaccaaa ggctgctggg tttgcatgtt tacaggctcc
     2281 accctagggc cagtgtcaga gctggctttg gggagctggg caaggaagag gaggcccagc
     2341 ccagactctt cctggccttt ctcaaccaaa gttctttgcc attcctacaa gcccagcctt
     2401 gctgctggtt gtccttctct ttgggtattt gcactatttg gggagcaggt ttttctatgt
     2461 gggagccact tttttgtaca gaggtaacgg ggtttttcag ggagcccact tggtgcctcc
     2521 ttccttattt tcttttctta atctatgcaa gcggctgcag ccgccatcat ctcctggatg
     2581 ccatggggct gcccacccat agctgattga gcagggggag gtggaacctc ctgagggtgg
     2641 gaatgtgcca gctctctaac ccagctaaag aaggggcgta cgtgtgtgcg tgcactctgc
     2701 aggggaaggg gaaagctgga gatctgttgt taccttttgc agttggtctt aaagagggtg
     2761 ggcctaaggc ttggcaaatg ccacttctgg caaacttgga aaattccaaa taaatctttt
     2821 tgtttattgg tg
//
