LOCUS       NM_001108752            3068 bp    mRNA    linear   ROD 12-NOV-2024
DEFINITION  Rattus norvegicus SWI/SNF related BAF chromatin remodeling complex
            subunit D1 (Smarcd1), mRNA.
ACCESSION   NM_001108752 XM_001062757 XM_001062809 XM_001062870 XM_001062930
            XM_001062988 XM_001063058 XM_343332
VERSION     NM_001108752.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3068)
  AUTHORS   Alpsoy,A. and Dykhuizen,E.C.
  TITLE     Glioma tumor suppressor candidate region gene 1 (GLTSCR1) and its
            paralog GLTSCR1-like form SWI/SNF chromatin remodeling subcomplexes
  JOURNAL   J Biol Chem 293 (11), 3892-3903 (2018)
   PUBMED   29374058
REFERENCE   2  (bases 1 to 3068)
  AUTHORS   Chen,S., Ding,Y., Zhang,Z., Wang,H. and Liu,C.
  TITLE     Hyperlipidaemia impairs the circadian clock and physiological
            homeostasis of vascular smooth muscle cells via the suppression of
            Smarcd1
  JOURNAL   J Pathol 233 (2), 159-169 (2014)
   PUBMED   24615205
  REMARK    GeneRIF: Demonstrate that Smarcd1 is a critical node integrating
            the circadian clock and vascular smooth muscle cell physiological
            homeostasis.
REFERENCE   3  (bases 1 to 3068)
  AUTHORS   Singh,A.P. and Archer,T.K.
  TITLE     Analysis of the SWI/SNF chromatin-remodeling complex during early
            heart development and BAF250a repression cardiac gene transcription
            during P19 cell differentiation
  JOURNAL   Nucleic Acids Res 42 (5), 2958-2975 (2014)
   PUBMED   24335282
REFERENCE   4  (bases 1 to 3068)
  AUTHORS   Shain,A.H. and Pollack,J.R.
  TITLE     The spectrum of SWI/SNF mutations, ubiquitous in human cancers
  JOURNAL   PLoS One 8 (1), e55119 (2013)
   PUBMED   23355908
REFERENCE   5  (bases 1 to 3068)
  AUTHORS   Hargreaves,D.C. and Crabtree,G.R.
  TITLE     ATP-dependent chromatin remodeling: genetics, genomics and
            mechanisms
  JOURNAL   Cell Res 21 (3), 396-420 (2011)
   PUBMED   21358755
  REMARK    Review article
REFERENCE   6  (bases 1 to 3068)
  AUTHORS   Hsiao,P.W., Fryer,C.J., Trotter,K.W., Wang,W. and Archer,T.K.
  TITLE     BAF60a mediates critical interactions between nuclear receptors and
            the BRG1 chromatin-remodeling complex for transactivation
  JOURNAL   Mol Cell Biol 23 (17), 6210-6220 (2003)
   PUBMED   12917342
REFERENCE   7  (bases 1 to 3068)
  AUTHORS   Otsuki,T., Furukawa,Y., Ikeda,K., Endo,H., Yamashita,T.,
            Shinohara,A., Iwamatsu,A., Ozawa,K. and Liu,J.M.
  TITLE     Fanconi anemia protein, FANCA, associates with BRG1, a component of
            the human SWI/SNF complex
  JOURNAL   Hum Mol Genet 10 (23), 2651-2660 (2001)
   PUBMED   11726552
REFERENCE   8  (bases 1 to 3068)
  AUTHORS   Xue,Y., Canman,J.C., Lee,C.S., Nie,Z., Yang,D., Moreno,G.T.,
            Young,M.K., Salmon,E.D. and Wang,W.
  TITLE     The human SWI/SNF-B chromatin-remodeling complex is related to
            yeast rsc and localizes at kinetochores of mitotic chromosomes
  JOURNAL   Proc Natl Acad Sci U S A 97 (24), 13015-13020 (2000)
   PUBMED   11078522
REFERENCE   9  (bases 1 to 3068)
  AUTHORS   Wang,W., Cote,J., Xue,Y., Zhou,S., Khavari,P.A., Biggar,S.R.,
            Muchardt,C., Kalpana,G.V., Goff,S.P., Yaniv,M., Workman,J.L. and
            Crabtree,G.R.
  TITLE     Purification and biochemical heterogeneity of the mammalian SWI-SNF
            complex
  JOURNAL   EMBO J 15 (19), 5370-5382 (1996)
   PUBMED   8895581
REFERENCE   10 (bases 1 to 3068)
  AUTHORS   Wang,W., Xue,Y., Zhou,S., Kuo,A., Cairns,B.R. and Crabtree,G.R.
  TITLE     Diversity and specialization of mammalian SWI/SNF complexes
  JOURNAL   Genes Dev 10 (17), 2117-2130 (1996)
   PUBMED   8804307
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH474035.2.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_343332.3, XM_001062757.1, XM_001062809.1, XM_001063058.1,
            XM_001062870.1, XM_001062930.1, XM_001062988.1.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMD00132261,
                              SAMD00132262 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..3068
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q36"
     gene            1..3068
                     /gene="Smarcd1"
                     /note="SWI/SNF related BAF chromatin remodeling complex
                     subunit D1"
                     /db_xref="GeneID:363002"
                     /db_xref="RGD:1305406"
     exon            1..182
                     /gene="Smarcd1"
                     /inference="alignment:Splign:2.1.0"
     CDS             6..1553
                     /gene="Smarcd1"
                     /note="SWI/SNF related, matrix associated, actin dependent
                     regulator of chromatin, subfamily d, member 1"
                     /codon_start=1
                     /product="SWI/SNF-related matrix-associated
                     actin-dependent regulator of chromatin subfamily D member
                     1"
                     /protein_id="NP_001102222.1"
                     /db_xref="GeneID:363002"
                     /db_xref="RGD:1305406"
                     /translation="MAARAGFQSVAPSGGAGASGGAGVAAALGPGGTPGPPVRMGPAP
                     GQGLYRSPMPGAAYPRPGMLPGSRMTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKR
                     PAPQQIQQVQQQAVQNRNHNAKKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQT
                     IMRKRLDIQEALKRPIKQKRKLRIFISNTFNPAKSDAEDGEGTVASWELRVEGRLLED
                     SALSKYDATKQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPG
                     DVNVRCTVLLMLDYQPPQFKLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHER
                     EFVICDKYLQQIFESQRMKFSEIPQRLHALLMPPEPIIINHVISVDPNDQKKTACYDI
                     DVEVDDTLKTQMNSFLLSTASQQEIATLDNKIHETIETINQLKTQREFMLSFARDPQG
                     FINDWLQSQCRDLKTMTDVVGNPEEERRAEFYFQPWAQEAVCRYFYSKVQQRRQELEQ
                     ALGIRNT"
     exon            183..370
                     /gene="Smarcd1"
                     /inference="alignment:Splign:2.1.0"
     exon            371..413
                     /gene="Smarcd1"
                     /inference="alignment:Splign:2.1.0"
     exon            414..536
                     /gene="Smarcd1"
                     /inference="alignment:Splign:2.1.0"
     exon            537..659
                     /gene="Smarcd1"
                     /inference="alignment:Splign:2.1.0"
     exon            660..776
                     /gene="Smarcd1"
                     /inference="alignment:Splign:2.1.0"
     exon            777..878
                     /gene="Smarcd1"
                     /inference="alignment:Splign:2.1.0"
     exon            879..1040
                     /gene="Smarcd1"
                     /inference="alignment:Splign:2.1.0"
     exon            1041..1138
                     /gene="Smarcd1"
                     /inference="alignment:Splign:2.1.0"
     exon            1139..1274
                     /gene="Smarcd1"
                     /inference="alignment:Splign:2.1.0"
     exon            1275..1397
                     /gene="Smarcd1"
                     /inference="alignment:Splign:2.1.0"
     exon            1398..1499
                     /gene="Smarcd1"
                     /inference="alignment:Splign:2.1.0"
     exon            1500..3068
                     /gene="Smarcd1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggaagatggc ggcccgggcg ggtttccagt ccgtggctcc gagcggcggc gcgggagcct
       61 caggaggagc gggcgtggcg gctgctctgg gcccgggcgg aactcccggg cctcccgtgc
      121 gaatgggccc ggcgccgggt caagggctgt accgctctcc gatgcccggg gcggcctatc
      181 cgagaccagg tatgctgcca ggcagccgaa tgacacctca gggaccttcc atgggacctc
      241 ctggctatgg ggggaaccct tcagtccgac ctggcctggc ccagtcaggg atggaccaat
      301 cccgcaagag acctgcacct caacagatcc agcaggtcca gcagcaggcg gtccaaaatc
      361 gaaatcacaa tgcaaagaaa aagaagatgg ctgacaaaat cctacctcag aggattcggg
      421 aattggtacc ggaatcacag gcctacatgg atctcctggc ttttgaaagg aaactggacc
      481 agactattat gaggaaacgc ctggatatcc aggaggcctt gaagcggccc atcaagcaaa
      541 aacggaagct gcggattttc atttctaaca cattcaatcc ggctaagtcg gatgccgagg
      601 acggggaagg gactgtggct tcctgggagc tccgggtaga aggacggctc ctggaggatt
      661 cagccttgtc caaatatgat gccaccaagc aaaagagaaa gttctcttcc ttttttaagt
      721 ccttggtgat cgaactggac aaagacctct atgggccaga caaccatctg gtagaatggc
      781 acaggaccgc cactacccag gagacagacg gcttccaggt gaagcgacca ggagatgtga
      841 atgtacggtg cactgtcctg ctgatgctgg attaccagcc cccccagttt aaattagacc
      901 ctcgcctggc tcgcctcttg ggcatccaca cccagacacg tccagtgatc atccaggcac
      961 tgtggcaata tattaaaaca cataagctcc aggaccctca cgagcgagag tttgttatct
     1021 gtgacaagta cctccagcag atctttgaat ctcagcggat gaagttctca gagatccctc
     1081 agcggctgca tgccctgctc atgccaccag aacccatcat cattaatcac gtcatcagtg
     1141 ttgacccaaa tgaccagaaa aagacagcgt gctacgacat tgatgtggaa gtggatgaca
     1201 ctttgaagac ccagatgaac tctttcctgc tgtccactgc cagccagcag gagatcgcta
     1261 ctctagacaa caagatccat gagacaatag aaactatcaa ccagctgaag acccaacgag
     1321 agttcatgct gagctttgcc cgagaccctc agggtttcat caatgattgg cttcaatccc
     1381 agtgccggga cctcaagaca atgactgatg tggtgggtaa tccggaagag gagcgccgag
     1441 ctgagttcta cttccagcct tgggcccagg aggccgtgtg tcgatacttc tactccaagg
     1501 tgcagcagag gcggcaagaa ttagagcaag ccctgggaat ccgaaacaca tagggcctcc
     1561 ctggccctag tgtctgcacc gagtttgtgg gccccgtgtt gcctgcctca gtgtccctgt
     1621 cttggtcttg cttgaggcat tctaggagat gctgttggct ccaggacagt gtcacaatga
     1681 agagggtgtc acatttccgt ctcacagtca cctgttatcc cttcctgcac cccggcctcc
     1741 cacctcagct cctccccacc aagctcccac gtgcctctac ctccctgtcc tacataggac
     1801 ctctagatag tgtagagaac cgtagtggta atgagtgctc tgaagcggtg gggcctcctg
     1861 aggtcaggcg ggctgcaggg agacccaggc cttgggagct gtcgccctct gagcctcagg
     1921 cctggggcag tctgtaagct agctgacctt ggcttcctgg taaccctact tcttcccttc
     1981 cttccctccc tccacaggtt ggagcagatt cattcacctt tcttcttgcc ctctagcact
     2041 aaaggagccc aggttccggg cttcactgaa tccaggttgg tccctgccct ctggacttaa
     2101 cctgctgtct gacccccaag tggggtccat gtcagtattg gagtgtggtt tcaactcttg
     2161 ctcctccaca cactcccgta gctgtcagta taggatttcc ccacacctgc cctaaccgca
     2221 gtgtttgggc tgggatctcg cctttccttg tcattcccag cagagactgt ccttcctgct
     2281 gttagaggag tggcttcttc attcactcca ccctgccccc ttccaaaaat ggagaaacag
     2341 gcctgaaatc aaacgggtaa agccctaggc cgtccctgtc ttcctgtccc atgtctgccc
     2401 agttgaaacc cactggtggc ttccagggca ctgaggagta aaagcgccta gggctggaga
     2461 ataggtctga aatgggtttg tgactcccca cccctgccct ctaagcttca gacctcaggt
     2521 agcagcaggc tgtgtggtct tggccccttg ggacagatgg ctttgcgtct tccagggaag
     2581 cctcagattc ttccaggttt tgtcacctgg agtggcatgt cccaggctcg cagacaacac
     2641 tgcagggtgg gagacagctg ggcacgggga ttccgttgag catgggctct gaacccacag
     2701 aactgacaaa gcccctgctt ccccaccccc acctcaggct cctgcgagca gtgttcctgc
     2761 acccttcctt cctgcctgtt ctgtactggg acagcagtgt ttcccctgtc ctcctcatgt
     2821 ccaatagcct ccctcctctt ggaaggtcct ccccacagtg acactggaca accttggggc
     2881 agctgagccc agcctggctt ctggctagaa gcatgatggg tgaactcggc actcccagtg
     2941 tccctgttga taactgtttt tattaactga attgtgtttt gttttgtttt ttttcatgga
     3001 ccaaaatttt ttttgtactg tctccttact gatgtcaccc agttttaata aaagacttct
     3061 gaagagca
//
