LOCUS       XM_002729767            4985 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus SWI/SNF related, matrix associated,
            actin dependent regulator of chromatin, subfamily c, member 2
            (Smarcc2), transcript variant X1, mRNA.
ACCESSION   XM_002729767
VERSION     XM_002729767.6
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jan 17, 2024 this sequence was replaced by
            NM_001427252.1.
            
            On Jan 21, 2021 this sequence version replaced XM_002729767.5.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4985
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4985
                     /gene="Smarcc2"
                     /note="SWI/SNF related, matrix associated, actin dependent
                     regulator of chromatin, subfamily c, member 2; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 108 ESTs, 3 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     206 samples with support for all annotated introns"
                     /db_xref="GeneID:685179"
                     /db_xref="RGD:1597704"
     CDS             130..3873
                     /gene="Smarcc2"
                     /codon_start=1
                     /product="SWI/SNF complex subunit SMARCC2 isoform X1"
                     /protein_id="XP_002729813.2"
                     /db_xref="GeneID:685179"
                     /db_xref="RGD:1597704"
                     /translation="MAVRKKDGGPNVKYYEAADTVTQFDNVRLWLGKNYKKYIQAEPP
                     TNKSLSSLVVQLLQFQEEVFGKHVSNAPLTKLPIKCFLDFKAGGSLCHILAAAYKFKS
                     DQGWRRYDFQNPSRMDRNVEMFMTIEKSLVQNNCLSRPNIFLCPEIEPKLLGKLKDIV
                     KRHQGTISEDKSNASHVVYPAPGNLEEEEWVRPVMKRDKQVLLHWGYYPDSYDTWIPA
                     SEIEASVEDAPTPEKPRKVHAKWILDTDTFNEWMNEEDYEVSDDKSPVSRRKKISAKT
                     LTDEVNSPDADRRDKKGGNYKKRKRSPSPSPTPEAKKKNAKKGPSTPYTKSKRGHREE
                     EQEDLTKDMDEPSPVPNVEEVTLPKTVNTKKDSESAPVKGGTMTDLDEQDDESMETTG
                     KDEDENSTGNKGEQTKSADLHEDNVTEQTHHIIVPSYAAWFDYNSVHAIERRALPEFF
                     NGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTACRRNLAGDVCAIMRVHAFLEQWG
                     LINYQVDAESRPTPMGPPPTSHFHVLADTPSGLVPLQPKPPQGRQVDADTKAGRKGKE
                     LDDLVPEAAKGKPELQGSASQQMLNFPDKGKEKPADMQNFGLRTDMYTKKNIPSKSKA
                     AASATREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLED
                     SEASLGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRVASAAAKSALEEFSKMKEEVPT
                     ALVEAHVRKVEEAAKVTGKADPAFGLESSGIAGTASDEPERIEESGTEEARAESQAAD
                     EKKEPKEPREGGGAVEEEAKEEISEAPKKDEEKGKEADSEKESEKSDGDPIVDPEKDK
                     EPTEGQEEGLKEVAEPEGERKAKVERDIGEGNLSTAAAAALAAAAVKAKHLAAVEERK
                     IKSLVALLVETQMKKLEIKLRHFEELETIMDREREALEYQRQQLLADRQAFHMEQLKY
                     AEMRARQQHFQQMQQQPPPPPPPPPPPALPPGSQPIPPTGAAAPATVHGLAVAPASVA
                     SAPPGGGAPPGTLGPSEQIGQAGTTAGPQQPQQAGAPQPGAVPPGVPPPGPHGPSPFP
                     NQQTPPSMMPGAVPGSGHPGVAGNAPLGLPFGLPLPPPAAPSIIPFGSLADSISINLP
                     PPNLHGHHHLPFAPGTIPPPNLPVSMANPLHPNLPATTTMPSSLPLGPGLGSAAAQSP
                     AIVAAVQGSLLPSASPLPDPGTPLPPDPTAPSPGTVTPVPPPQ"
ORIGIN      
        1 tccgctggtc ggggcccagg cggcgggagg cggcggtcgt ggcggcggga ggtggcggga
       61 ggcgggcgga ggaggaggcg ggagctgagt tgagcggggc gggcggcggc ggggcccgag
      121 cctgagaaga tggcggtgcg gaagaaggac ggcggcccca acgtgaagta ctacgaggcc
      181 gcggacaccg tgacccagtt cgacaacgtg cggctctggc tcggcaagaa ctacaagaag
      241 tacatacaag cagaaccacc aaccaacaag tctctgtcta gcctggtggt gcagttgctc
      301 cagtttcagg aagaggtttt tggcaaacat gtcagcaacg caccgcttac taaactgccg
      361 atcaaatgtt tcctagattt caaagcagga ggatccctgt gccatattct tgcagctgcc
      421 tacaaattca agagtgacca gggatggcgg cggtacgatt tccagaatcc atcacgtatg
      481 gaccgcaacg tggaaatgtt tatgaccatt gagaagtcct tggtacagaa caattgcctg
      541 tctcgaccta acattttcct gtgcccagaa attgagccca aactgctagg gaaattaaaa
      601 gacattgtta aaagacacca gggaaccatt tctgaggaca agagcaatgc ctcccatgtt
      661 gtgtatcctg ccccagggaa cttagaggaa gaggaatggg tacggccagt catgaagagg
      721 gataaacaag ttctcctcca ctggggctac tatcctgaca gctatgacac gtggatccca
      781 gccagtgaaa ttgaagcatc tgtggaggac gctcccactc ctgagaaacc taggaaggtc
      841 catgcaaagt ggatcctcga cactgacacg ttcaatgagt ggatgaatga ggaagactat
      901 gaagttagtg acgacaaaag cccagtctcc cgcagaaaga agatctcagc caagacgctg
      961 acagatgagg taaacagccc ggatgcagac agacgggaca agaagggggg gaactataag
     1021 aagaggaaac gctctccctc tccttcgcca accccagaag ctaagaagaa aaatgctaag
     1081 aaaggaccct ccacacctta caccaagtca aagcgagggc acagagagga ggagcaagaa
     1141 gacctgacaa aagacatgga tgagccctct ccagtcccaa atgtggaaga ggtgacactc
     1201 cccaaaacag tcaacactaa aaaggactcc gagtcagcac cagtcaaagg cggcaccatg
     1261 actgacctgg atgaacagga cgacgaaagc atggagacca cgggcaagga tgaggacgag
     1321 aacagcaccg gcaacaaagg ggagcagacc aagagcgcgg acctgcacga ggacaacgtg
     1381 acagagcaga cacaccacat catcgtcccc agctatgctg cctggtttga ctacaacagt
     1441 gtccatgcca ttgagcggag ggctcttcct gagttcttca acggcaagaa caagtccaag
     1501 actccagaga tctacctggc atatcggaac ttcatgattg acacttaccg gctgaacccc
     1561 caggagtatc taacatccac tgcctgtcgg cggaacttgg cgggtgatgt ctgcgctatt
     1621 atgagggtcc acgccttcct ggaacagtgg ggtcttatta actaccaggt agacgctgag
     1681 agtcgaccaa ccccaatggg gcctccaccc acctctcact tccatgtctt ggcggacaca
     1741 ccatcagggc ttgttcctct tcagccaaag cccccacagg gccgccaggt tgatgctgat
     1801 accaaggctg ggcggaaggg caaagagctg gatgacctgg tgccagaggc ggctaagggc
     1861 aagccagagc tgcagggctc tgcttcccag cagatgctga acttccctga taagggcaag
     1921 gagaagccag cagacatgca gaactttggg ctgcgcacag acatgtacac caagaagaac
     1981 atcccctcca agagcaaagc tgcagctagt gccactcggg aatggacaga gcaggagaca
     2041 ttgctgctct tggaggctct ggaaatgtac aaggacgact ggaacaaagt gtctgagcat
     2101 gtgggaagcc gcacgcagga tgagtgcatc ttgcatttcc ttcgccttcc cattgaagac
     2161 ccatacctgg aggactcaga ggcctctcta ggccctctgg cctaccagcc catccccttc
     2221 agtcagtcag gcaaccctgt tatgagcact gttgccttcc tggcctctgt cgtcgatccc
     2281 cgagttgcct ctgctgctgc aaagtcagcc ctagaagagt tctcaaaaat gaaggaagag
     2341 gtgcccacag ccttggtgga agcccatgtg cgcaaggtag aagaagcagc caaagtcaca
     2401 ggcaaggcag acccagcttt cggtctggag agtagcggca ttgcagggac ggcctctgac
     2461 gagcctgagc gcattgagga aagcgggact gaggaggcac gggcggagag ccaggcagcg
     2521 gatgagaaga aggagccaaa ggaacctcgg gaaggaggag gtgctgtaga ggaagaagca
     2581 aaggaggaaa taagtgaagc tcccaagaaa gatgaagaga aagggaaaga agcggacagt
     2641 gagaaggagt cagagaagag tgacggggac ccaatagtcg atccagagaa agacaaggag
     2701 ccgacggaag ggcaggagga agggctgaag gaagttgcag agccagaggg ggagaggaaa
     2761 gccaaggtgg agcgcgacat tggtgaaggc aacctgtcca cagctgcggc cgctgccctg
     2821 gctgctgctg cagtcaaggc caagcacttg gcagctgtcg aggagaggaa gatcaagtct
     2881 ttggtggctc tgttggtgga gacccagatg aagaaactag agatcaaact ccgacatttt
     2941 gaggaactgg agacgataat ggaccgggag cgagaagcgc tggaatatca gaggcagcag
     3001 ctcctggccg accggcaagc cttccacatg gagcagctga agtatgcaga gatgagggcg
     3061 cggcagcaac acttccagca gatgcagcag cagccgccgc cgccgccgcc gccaccgccg
     3121 ccgccagccc tgcccccagg ctcccagccc atccccccca ccggggccgc ggcacccgcg
     3181 acagtccacg gtctagctgt agctccagcc agtgtggcct ccgctcctcc tggcggtggg
     3241 gcccctccag gaaccttggg cccttctgaa cagatcgggc aggcagggac aactgcaggg
     3301 ccacagcagc cacaacaagc tggagcccct cagcctgggg cagtcccacc aggggtaccc
     3361 ccccctggac cccatggccc ctcaccgttc cccaaccaac aaactcctcc ctcaatgatg
     3421 ccaggggcag tgccaggcag cgggcaccca ggcgtggcgg gtaatgctcc tttgggtttg
     3481 cctttcggct tgccgcttcc tccccctgct gctccatcca tcatcccatt cggtagtcta
     3541 gccgactcca ttagtattaa ccttccccct cctaacctgc atggtcacca ccatctcccg
     3601 tttgccccgg gcactatccc cccacctaac ctgcctgtgt ccatggcgaa ccctctacat
     3661 cctaacctgc cggcgaccac caccatgcca tcttccttgc ctctcgggcc ggggctcgga
     3721 tcggccgcag cccagagccc tgccattgtg gctgctgttc agggcagcct cctgcccagt
     3781 gccagcccac tgccagaccc aggcaccccg ctgcctccag accccacagc tccgagccca
     3841 ggcacagtca cccctgtgcc acccccacag tgaggaacca gccagctatc tcccctcact
     3901 ccccatggag atcacagtcc aggaaccacc ctcccccaca actgggaccc tccctcagcc
     3961 tggagagttc atcactacgt aaggaaagct cctgcccctt caccacccca catgcccagc
     4021 agaggtgtgc agttttatat ccaatattat ccacggactt ctaagatgtt tctaatgcct
     4081 gggagagagg ataggaggga aggatgttta ttcaaggttc tattactggt tctgagggtg
     4141 taccttcaga attactgcag ttttgaagtg ataacatgaa aatgaaaccc tttaaaaggg
     4201 aggttttaaa aagacacatc tgagaccaca aaaaagaact ttttattttt atttttgagg
     4261 ggaaagggaa cgttttaaga ggaattaagt tttggggcag gctgtggaga tggaacaggg
     4321 caccaagcct gtctgagccc cttggcagtg ctgagtcagc ccctcaccca ttccacttta
     4381 tcaaactaat ccctcctgct gcttgtcatt gtggctgtta ggcccagctc agccaatgac
     4441 cttcccctct gagtgtcagc ctcgtgttgt ttttaagtca cctgctcact gtcagcgtct
     4501 gtgtacttgt gggaaatgta gtttgcaggg attctgtggt aggtaataga ggaagaaggg
     4561 gcctcaggtg ggctcttctt cctgctttcc tggttgtatc ttgagtgccc aacaggcatc
     4621 aaacaaaggt ggagctctaa gaggatgggg agtctgcaac ccttgagttt tgaaaagcac
     4681 ttaagcacct acttttgaca gtgggacagt ctgctaactt ctgccctcag caagcctgac
     4741 agaacccagt gatagctagg agttccccaa atgaggacaa agatttggga gcagcgcagc
     4801 atggccctgc ccccaggact cagtgcttgg ctccacccac caggcgctct gctcctcctc
     4861 tgtccaagtg tttccttcct ccgcatctcc gcacctttct tctgttcagt cttctgtaaa
     4921 atttcctttt cttctttgtt cttttctttt tccttttttt ttttttataa attaatttgc
     4981 tttca
//
