LOCUS       NM_001413573            5643 bp    mRNA    linear   ROD 24-NOV-2023
DEFINITION  Rattus norvegicus SWI/SNF related, matrix associated, actin
            dependent regulator of chromatin, subfamily c, member 1 (Smarcc1),
            mRNA.
ACCESSION   NM_001413573 XM_006243770
VERSION     NM_001413573.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 5643)
  AUTHORS   Ling X, Wei S, Ling D, Cao S, Chang R, Wang Q and Yuan Z.
  TITLE     Irf7 regulates the expression of Srg3 and ferroptosis axis
            aggravated sepsis-induced acute lung injury
  JOURNAL   Cell Mol Biol Lett 28 (1), 91 (2023)
   PUBMED   37946128
  REMARK    GeneRIF: Irf7 regulates the expression of Srg3 and ferroptosis axis
            aggravated sepsis-induced acute lung injury.
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5643)
  AUTHORS   Wang G, Lv Q, Ma C, Zhang Y, Li H and Ding Q.
  TITLE     SMARCC1 expression is positively correlated with pathological grade
            and good prognosis in renal cell carcinoma
  JOURNAL   Transl Androl Urol 10 (1), 236-242 (2021)
   PUBMED   33532313
REFERENCE   3  (bases 1 to 5643)
  AUTHORS   Zhou Y, Xu Q, Tao L, Chen Y, Shu Y, Wu Z, Lu C, Shi Y and Bu H.
  TITLE     Enhanced SMARCD1, a subunit of the SWI/SNF complex, promotes liver
            cancer growth through the mTOR pathway
  JOURNAL   Clin Sci (Lond) 134 (12), 1457-1472 (2020)
   PUBMED   32514535
REFERENCE   4  (bases 1 to 5643)
  AUTHORS   Chen MS, Lin CH, Huang LY and Qiu XM.
  TITLE     CircRNA SMARCC1 Sponges MiR-140-3p to Regulate Cell Progression in
            Colorectal Cancer
  JOURNAL   Cancer Manag Res 12, 4899-4910 (2020)
   PUBMED   32606978
  REMARK    Publication Status: Online-Only
REFERENCE   5  (bases 1 to 5643)
  AUTHORS   Tsuruta S, Kohashi K, Yamada Y, Fujiwara M, Koga Y, Ihara E, Ogawa
            Y, Oki E, Nakamura M and Oda Y.
  TITLE     Solid-type poorly differentiated adenocarcinoma of the stomach:
            Deficiency of mismatch repair and SWI/SNF complex
  JOURNAL   Cancer Sci 111 (3), 1008-1019 (2020)
   PUBMED   31922331
REFERENCE   6  (bases 1 to 5643)
  AUTHORS   Xue Y, Canman JC, Lee CS, Nie Z, Yang D, Moreno GT, Young MK,
            Salmon ED and Wang W.
  TITLE     The human SWI/SNF-B chromatin-remodeling complex is related to
            yeast rsc and localizes at kinetochores of mitotic chromosomes
  JOURNAL   Proc Natl Acad Sci U S A 97 (24), 13015-13020 (2000)
   PUBMED   11078522
REFERENCE   7  (bases 1 to 5643)
  AUTHORS   Kadam S, McAlpine GS, Phelan ML, Kingston RE, Jones KA and Emerson
            BM.
  TITLE     Functional selectivity of recombinant mammalian SWI/SNF subunits
  JOURNAL   Genes Dev 14 (19), 2441-2451 (2000)
   PUBMED   11018012
REFERENCE   8  (bases 1 to 5643)
  AUTHORS   Phelan ML, Sif S, Narlikar GJ and Kingston RE.
  TITLE     Reconstitution of a core chromatin remodeling complex from SWI/SNF
            subunits
  JOURNAL   Mol Cell 3 (2), 247-253 (1999)
   PUBMED   10078207
REFERENCE   9  (bases 1 to 5643)
  AUTHORS   Wang W, Cote J, Xue Y, Zhou S, Khavari PA, Biggar SR, Muchardt C,
            Kalpana GV, Goff SP, Yaniv M, Workman JL and Crabtree GR.
  TITLE     Purification and biochemical heterogeneity of the mammalian SWI-SNF
            complex
  JOURNAL   EMBO J 15 (19), 5370-5382 (1996)
   PUBMED   8895581
REFERENCE   10 (bases 1 to 5643)
  AUTHORS   Wang W, Xue Y, Zhou S, Kuo A, Cairns BR and Crabtree GR.
  TITLE     Diversity and specialization of mammalian SWI/SNF complexes
  JOURNAL   Genes Dev 10 (17), 2117-2130 (1996)
   PUBMED   8804307
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JACYVU010000200.1.
            
            [WARNING] On Apr 3, 2024 this sequence was replaced by
            NM_001413573.2.
            
            On Nov 2, 2022 this sequence version replaced XM_006243770.4.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMD00132261,
                              SAMD00132262 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-279               JACYVU010000200.1  13069904-13070182
            280-399             JACYVU010000200.1  13073391-13073510
            400-485             JACYVU010000200.1  13077206-13077291
            486-567             JACYVU010000200.1  13084237-13084318
            568-660             JACYVU010000200.1  13086533-13086625
            661-730             JACYVU010000200.1  13090698-13090767
            731-800             JACYVU010000200.1  13092818-13092887
            801-876             JACYVU010000200.1  13100874-13100949
            877-1002            JACYVU010000200.1  13104107-13104232
            1003-1124           JACYVU010000200.1  13107407-13107528
            1125-1249           JACYVU010000200.1  13109986-13110110
            1250-1309           JACYVU010000200.1  13111388-13111447
            1310-1347           JACYVU010000200.1  13115407-13115444
            1348-1469           JACYVU010000200.1  13121209-13121330
            1470-1541           JACYVU010000200.1  13121857-13121928
            1542-1655           JACYVU010000200.1  13123915-13124028
            1656-1809           JACYVU010000200.1  13124892-13125045
            1810-1923           JACYVU010000200.1  13125904-13126017
            1924-1983           JACYVU010000200.1  13127734-13127793
            1984-2242           JACYVU010000200.1  13130252-13130510
            2243-2404           JACYVU010000200.1  13131782-13131943
            2405-2460           JACYVU010000200.1  13139870-13139925
            2461-2575           JACYVU010000200.1  13141954-13142068
            2576-2730           JACYVU010000200.1  13143554-13143708
            2731-2865           JACYVU010000200.1  13150925-13151059
            2866-3127           JACYVU010000200.1  13155611-13155872
            3128-3304           JACYVU010000200.1  13168236-13168412
            3305-5643           JACYVU010000200.1  13171179-13173517
FEATURES             Location/Qualifiers
     source          1..5643
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q32"
     gene            1..5643
                     /gene="Smarcc1"
                     /note="SWI/SNF related, matrix associated, actin dependent
                     regulator of chromatin, subfamily c, member 1"
                     /db_xref="GeneID:301020"
                     /db_xref="RGD:1304850"
     exon            1..279
                     /gene="Smarcc1"
                     /inference="alignment:Splign:2.1.0"
     CDS             88..3396
                     /gene="Smarcc1"
                     /codon_start=1
                     /product="SWI/SNF complex subunit SMARCC1"
                     /protein_id="NP_001400502.1"
                     /db_xref="GeneID:301020"
                     /db_xref="RGD:1304850"
                     /translation="MATTAGGGPGAAAGAVGAGGAAAASGLAVYRRKDGGPASKFWES
                     PDTVSQLDSVRVWLGKHYKKYVHADAPTNKTLAGLVVQLLQFQEDAFGKHVTNPAFTK
                     LPAKCFMDFKAGGTLCHILGAAYKYKNEQGWRRFDLQNPSRMDRNVEMFMNIEKTLVQ
                     NNCLTRPNIYLIPDIDLKLANKLKDIIKRHQGTFTDEKSKASHHIYPYPSSQEDEEWL
                     RPVMRRDKQVLVHWGFYPDSYDTWVHSNDVDAEIEDAPIPEKPWKVHVKWILDTDVFN
                     EWMNEEDYEVDENRKPVSFRQRISTKNEEPVRSPERRERKASANARKRKHSPSPPPPT
                     ATESRKKSGKKGQASLYGKRRNQKDEDEQEDLTKDMEDPTPVPNIEEVLLPKNVNPKK
                     DSENTPVKGGTVADLDEQDEEAVTTGGKEDEDPSKGDPSRSADAGEDNVTEQTNHIII
                     PSYASWFDYNCIHVIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTST
                     ACRRNLTGDVCAVMRVHAFLEQWGLVNYQVDPESRPMAMGPPPTPHFNVLADTPSGLV
                     PLHLRSPQVPAAQQMLNFPEKNKEKPIDLQNFGLRTDIYSKKTLAKSKGASAGREWTE
                     QETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLENSDASLGPLAY
                     QPVPFSQSGNPVMSTVAFLASVVDPRVASAAAKAALEEFSRVREEVPLELVEAHVKKV
                     QEAARASGKVDPTYGLESSCIAGTGPDEPEKLEGSEEEKMETDPDGQQPEKAENKGEN
                     ESDEGDKIQDGENEKNSEKERDSDTSEDVKPEEKENEENKELTDTCKERESDTGKKKV
                     EHEISEGNVATAAAAALASAATKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFE
                     ELETIMDREKEALEQQRQQLLTERQNFHMEQLKYAELRARQQMEQQQHGQPPQQAHQH
                     PGGPGLAPLGAAGHPGMMPHQQPPPYPMMHHQMPPPHPPQPGQIPGPGSMMPGQPMPG
                     RMIPTVAANIHPTGSGPTPPGMPPMPGNILGPRVPLTAPNGMYPPPPQQPPPPPADGV
                     PPPPVPGPPASATP"
     exon            280..399
                     /gene="Smarcc1"
                     /inference="alignment:Splign:2.1.0"
     exon            400..485
                     /gene="Smarcc1"
                     /inference="alignment:Splign:2.1.0"
     exon            486..567
                     /gene="Smarcc1"
                     /inference="alignment:Splign:2.1.0"
     exon            568..660
                     /gene="Smarcc1"
                     /inference="alignment:Splign:2.1.0"
     exon            661..730
                     /gene="Smarcc1"
                     /inference="alignment:Splign:2.1.0"
     exon            731..800
                     /gene="Smarcc1"
                     /inference="alignment:Splign:2.1.0"
     exon            801..876
                     /gene="Smarcc1"
                     /inference="alignment:Splign:2.1.0"
     exon            877..1002
                     /gene="Smarcc1"
                     /inference="alignment:Splign:2.1.0"
     exon            1003..1124
                     /gene="Smarcc1"
                     /inference="alignment:Splign:2.1.0"
     exon            1125..1249
                     /gene="Smarcc1"
                     /inference="alignment:Splign:2.1.0"
     exon            1250..1309
                     /gene="Smarcc1"
                     /inference="alignment:Splign:2.1.0"
     exon            1310..1347
                     /gene="Smarcc1"
                     /inference="alignment:Splign:2.1.0"
     exon            1348..1469
                     /gene="Smarcc1"
                     /inference="alignment:Splign:2.1.0"
     exon            1470..1541
                     /gene="Smarcc1"
                     /inference="alignment:Splign:2.1.0"
     exon            1542..1655
                     /gene="Smarcc1"
                     /inference="alignment:Splign:2.1.0"
     exon            1656..1809
                     /gene="Smarcc1"
                     /inference="alignment:Splign:2.1.0"
     exon            1810..1923
                     /gene="Smarcc1"
                     /inference="alignment:Splign:2.1.0"
     exon            1924..1983
                     /gene="Smarcc1"
                     /inference="alignment:Splign:2.1.0"
     exon            1984..2242
                     /gene="Smarcc1"
                     /inference="alignment:Splign:2.1.0"
     exon            2243..2404
                     /gene="Smarcc1"
                     /inference="alignment:Splign:2.1.0"
     exon            2405..2460
                     /gene="Smarcc1"
                     /inference="alignment:Splign:2.1.0"
     exon            2461..2575
                     /gene="Smarcc1"
                     /inference="alignment:Splign:2.1.0"
     exon            2576..2730
                     /gene="Smarcc1"
                     /inference="alignment:Splign:2.1.0"
     exon            2731..2865
                     /gene="Smarcc1"
                     /inference="alignment:Splign:2.1.0"
     exon            2866..3127
                     /gene="Smarcc1"
                     /inference="alignment:Splign:2.1.0"
     exon            3128..3304
                     /gene="Smarcc1"
                     /inference="alignment:Splign:2.1.0"
     exon            3305..5643
                     /gene="Smarcc1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggtatctgcg cgcgcgcgcg cgggtgcgaa cgggaaacgc cgcgagggcc aggctaggcc
       61 gggcggtaga cacgacggac ggtgactatg gccacgacag cgggtggtgg tccgggagca
      121 gcagcaggcg ccgtgggtgc agggggtgcg gcggcggcct ccgggttggc cgtgtaccgg
      181 aggaaggacg ggggcccggc cagcaagttt tgggagagcc cggacacggt gtcccagcta
      241 gattcggtgc gagtctggct gggcaagcac tacaagaagt atgttcatgc ggatgcgcct
      301 accaataaaa cactggctgg actggtggtg cagcttctgc agttccaaga agatgccttt
      361 gggaagcatg tcaccaaccc agctttcacc aaactacctg caaaatgttt catggatttc
      421 aaagctggag gcaccttgtg tcacattctt ggggctgctt acaagtacaa aaatgaacag
      481 ggctggcgca gatttgacct gcagaaccca tcgcgaatgg accgtaatgt tgagatgttc
      541 atgaacatcg agaaaacatt ggtacagaac aactgtctga ctagacctaa catctacctc
      601 attccagaca ttgatttgaa gttggctaac aagttgaagg atatcatcaa acggcatcag
      661 gggacgttta ctgatgagaa gtcaaaagct tcccaccata tttacccata cccttcctct
      721 caagaggacg aggagtggct gaggccagtg atgaggagag acaagcaggt gctggtgcac
      781 tggggcttct accctgacag ctatgacaca tgggtccata gtaatgatgt tgatgctgaa
      841 attgaagatg caccaatccc agaaaagcca tggaaggttc atgtgaaatg gattttggac
      901 actgatgttt tcaatgaatg gatgaatgaa gaggattatg aagtggatga gaacagaaag
      961 ccagtgagtt ttcgtcaacg aatttcaaca aagaatgaag agccagtcag aagtccagaa
     1021 aggagagaga ggaaagcatc cgccaatgct cgcaagagga agcattcccc ttctcctcct
     1081 cctcctacag ccacggagtc tcggaagaag agtgggaaga aaggacaagc tagtctctat
     1141 gggaagcgtc gaaatcagaa ggacgaggat gagcaggaag atcttaccaa ggacatggaa
     1201 gacccaaccc ctgtccccaa catagaggaa gtgcttctcc cgaagaacgt aaacccaaag
     1261 aaggacagtg aaaacacacc agttaaagga ggcacggtgg cagatctaga tgagcaggat
     1321 gaagaagccg ttacaacagg aggaaaggaa gatgaagatc ccagcaaagg tgatccaagt
     1381 cgttcagctg acgcaggtga agacaatgtg acagaacaga ccaatcacat cattattccc
     1441 agctacgctt cctggtttga ttataattgt attcatgtga ttgaacggcg tgcgcttccc
     1501 gagtttttta atggaaaaaa caaatccaag actcctgaaa tatacttggc atatcgaaat
     1561 tttatgattg atacataccg tctaaatcct caagaatatt taaccagcac tgcttgtcgg
     1621 cgaaacctga ctggagatgt gtgtgctgtg atgagggttc atgccttctt agagcagtgg
     1681 ggtcttgtta actaccaagt tgatccagaa agtcgaccca tggcaatggg acctcctccc
     1741 actcctcatt tcaatgtgtt agctgacaca ccctctgggc tcgtgcctct gcatcttcga
     1801 tcacctcagg tccctgctgc tcaacagatg ttaaattttc ctgagaagaa caaggagaaa
     1861 ccaattgatt tgcagaactt tggtcttcga actgacattt actccaagaa aacactggca
     1921 aagagtaaag gagctagtgc cggaagggag tggacagaac aggagaccct tcttctccta
     1981 gaggctctgg agatgtacaa ggatgattgg aataaagtct cggaacatgt tggaagccgt
     2041 actcaggatg aatgcatcct ccactttttg aggcttccca ttgaggaccc ataccttgaa
     2101 aattcagatg cttctcttgg gccactagct taccagcctg tccctttcag ccagtcagga
     2161 aaccccgtga tgagtactgt tgccttttta gcatccgtgg ttgaccctcg agtagcatca
     2221 gctgcagcca aagcagcttt ggaggagttt tctcgtgtcc gagaagaagt acccctggaa
     2281 ttggtggaag cgcatgtcaa gaaagtacag gaagctgcaa gagcctctgg gaaggtggat
     2341 cctacctacg gcctggagag cagctgcatt gcaggcaccg ggcccgatga gccggagaag
     2401 cttgaagggt ctgaagaaga gaagatggaa acagatcctg atggtcagca gcctgaaaag
     2461 gcagaaaaca aaggggaaaa tgaatcggat gaaggggata aaatacaaga tggagagaat
     2521 gagaaaaaca gcgagaagga acgagatagt gacaccagtg aggacgtcaa gccagaagaa
     2581 aaggagaatg aagagaacaa agagctcact gatacatgta aagaaagaga aagcgatacc
     2641 gggaagaaga aagtggagca cgagatttct gaaggaaatg ttgccacagc cgcagcagct
     2701 gctctggcct cagctgctac caaagccaag cacctggctg ctgtcgaaga aagaaagatc
     2761 aaatccctgg tggctctcct ggttgagaca cagatgaaga agctagagat caaacttcga
     2821 cattttgaag agctggagac tattatggac agagagaaag aggctctaga acaacagaga
     2881 cagcagttgc ttactgaacg tcagaacttc cacatggagc aattgaaata tgctgaactg
     2941 cgtgctcggc agcagatgga gcagcagcag cacggccagc cacctcagca agcacaccag
     3001 cacccgggag gaccggggct ggccccactt ggggcagcag gccacccagg catgatgcct
     3061 catcagcagc cccctccata ccccatgatg caccatcaga tgccaccacc ccatcctccc
     3121 caaccaggtc aaataccagg ccctggctcc atgatgcctg ggcaacctat gccaggtcgc
     3181 atgattccca ccgtggcagc caacattcac cctactggga gtggccctac ccctcccggt
     3241 atgcctccaa tgcccggaaa catcttagga ccccgggtac ccctcacagc accaaacggc
     3301 atgtatcctc ctccaccaca gcagccgccg ccgcctcctg cagatggggt ccctccacct
     3361 cctgttccag gccctccagc ctcagccact ccctagcctg gaagaccagg gaacctccac
     3421 agccaccaca agctgaactg gggatggcaa gacttgtgtc tcggcttcct tggttttctt
     3481 gcaagatttt ttttttcaca accccaagca caagtcccat gtctctccac tctgatactt
     3541 cgtgtgtcag gtccttagtt gacattcaat ggaaagcctg tggtgactag tgtgctctga
     3601 tcattttaaa agtaccatgt cccctgtccc cgtgtgacag atgttagcaa ttggtctgca
     3661 ggtcctgttg acattaatat cctctctgtg tctgtctgtc tgtctatctg tctctctgct
     3721 ttgtctaagg cttcaatgga taatcctata taattattgt cctttctttc tctgttacgg
     3781 ttgtttttaa agaaagtatc ctaagttaat agaaaccaaa aagtggtaat gggcagaaag
     3841 agatagccac agagggacac accttaaggc attataagtg accttatttc tgcttatctg
     3901 agctaagagt ggtgctactg gtaaagttcc tgagacttgt gacacataaa tgctccaaaa
     3961 tgggaagagc tggggggtgg gggtaatccc tttgataagt ttcctggtga ggaccatgag
     4021 ggactccacg ctgcctggaa gaacacacca ccgtccctgt tgtatgacag cacagccaag
     4081 agcacaaaca ggagagccag ccactccttc cttctcccac cattctgggt ttttgtgcaa
     4141 aagatttgca gtattgaact agatggttgt tttcctaagg gcagcgtggg ctttaaaagt
     4201 tgaaatttga caggtatttg ctggtttttc ccagtctaac aaagaaagat aaagggtctg
     4261 gggccctacc tacacacttt aggagccccg tccaaccttc cccaaataca catgctctaa
     4321 actcaccatg ttacatgttt tttaaacctt cctcctataa aaaaggaaaa caatgtaaaa
     4381 tgggctaagt agattatgct aaacattttc tctcatgcag cttggttagg gtggcggggt
     4441 acagatccta aactacctct tgctgtagcc agggtgaatg ggatttctta agcggtactg
     4501 aggtgcagag tgggagtgga aatgcccacg tgtgaccagt agcctctgtt cctccttctt
     4561 gtaagacctc acatttccat ctgtcacagg gttatggaaa gtatgctgtt ggctccagag
     4621 tgttaggctt taaggtttgg ggagccatcc ctgaggaaga cacacacaca cacacacaca
     4681 cacacacaca cacacacaca cacaaatgcc ttaatttgag cctgtatcta cccctgctga
     4741 tgaacaatta gatgggcttg ggttttgtca gctccctccc tccctccttc cctcccttcc
     4801 tcccttcttt ctgtctttcc attagtagca aaagcgtgtt tttggcagaa ctttaagtgg
     4861 caatttcatt cttgagaacg cacggtagaa gaccttatgg gtgtattttc tatgtgtttt
     4921 aaagctttat gtatgagagg taggtaggca tttcttaata acaaaaaaag aaaccccaca
     4981 gttgagattt gccttggaga ctcttgggtt tgcctctaac aaggtgctcg agtcaccgcc
     5041 agagtcttgg ggtgctagag ctagagaaac cctgcccctt ctttatattc tagagtctta
     5101 gagtggagat ggaagtgagc ttgttccttg ggagctcact ctgctcattt gtctccagga
     5161 agaccccagt gccttttgac cgtggccagg gctcccctcc attctctcca aagtaaattg
     5221 actccgaaca cttgccttct gcctggatcc tagaagaata ggactctggt ccatactgtg
     5281 gtcgttataa cctaaggtct gtaatgtgat cactttccag tttgagagat gaaatagaga
     5341 taattttaca gtgttgataa tctacaaacc tgagttaaca gctctttccg tgactgggag
     5401 tccggtgtca ttcctgtaat aacacccatt caattttgtg aggggcgggc ttgggtactg
     5461 tgtggttttt gtacaaatgt gtttctcagt gtgggttttt ggtttttgtt gtttttcctt
     5521 taggttttgt tttaatgagg gaagggagtt ttgagagttt gggagaaaaa aatgaatgaa
     5581 agtggcttaa tgtccctctt tttcattgaa taaatgaata ccatttatga attctagccc
     5641 caa
//
