LOCUS       NM_001100669            2875 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus small ArfGAP2 (Smap2), mRNA.
ACCESSION   NM_001100669 XM_001053545 XM_216529
VERSION     NM_001100669.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2875)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 2875)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CB702191.1, BC161927.1 and BC099210.1.
            
            On or before Jun 1, 2008 this sequence version replaced
            XM_001053545.1, XM_216529.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC161927.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760396 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-6                 CB702191.1         1-6
            7-1680              BC161927.1         1-1674
            1681-2875           BC099210.1         544-1738
FEATURES             Location/Qualifiers
     source          1..2875
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q36"
     gene            1..2875
                     /gene="Smap2"
                     /gene_synonym="RGD1308418; Smap1l"
                     /note="small ArfGAP2"
                     /db_xref="GeneID:298500"
                     /db_xref="RGD:1308418"
     exon            1..475
                     /gene="Smap2"
                     /gene_synonym="RGD1308418; Smap1l"
                     /inference="alignment:Splign:2.1.0"
     CDS             373..1659
                     /gene="Smap2"
                     /gene_synonym="RGD1308418; Smap1l"
                     /note="stromal membrane-associated GTPase-activating
                     protein 2"
                     /codon_start=1
                     /product="stromal membrane-associated protein 2"
                     /protein_id="NP_001094139.1"
                     /db_xref="GeneID:298500"
                     /db_xref="RGD:1308418"
                     /translation="MTGKSVKDVDRYQAVLANLLLEEDNKFCADCQSKGPRWASWNIG
                     VFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCMQEMGNGKANRLYEAYLPETFR
                     RPQIDPAVEGFIRDKYEKKKYMDRSLDINVLRKEKDDKWKRGSEPAPEKKMEPVVFEK
                     VKMPQKKEDAQLPRKSSPKSAAPVMDLLGLDAPVACSIANSKTSNALEKDLDLLASVP
                     SPSSVSRKAVGSMPTAGSAGSVPENLNLFPEPGSKSEETGKKQLSKDSILSLYGSQTP
                     QMPAQAMFMAPAQMAYPTAYPSFPGVTPPNSIMGSMMPPPVGMVAHPGASGMVTPMAM
                     PAGYMGGMQASMAGVPSGMMTTQQAGYMASMAAMPQTVYGVQPAQQLQWNLTQMTQQM
                     AGMNFYGANGMMSYGQSMGGGNGQAANQTLSPQMWK"
     exon            476..609
                     /gene="Smap2"
                     /gene_synonym="RGD1308418; Smap1l"
                     /inference="alignment:Splign:2.1.0"
     exon            610..695
                     /gene="Smap2"
                     /gene_synonym="RGD1308418; Smap1l"
                     /inference="alignment:Splign:2.1.0"
     exon            696..774
                     /gene="Smap2"
                     /gene_synonym="RGD1308418; Smap1l"
                     /inference="alignment:Splign:2.1.0"
     exon            775..861
                     /gene="Smap2"
                     /gene_synonym="RGD1308418; Smap1l"
                     /inference="alignment:Splign:2.1.0"
     exon            862..943
                     /gene="Smap2"
                     /gene_synonym="RGD1308418; Smap1l"
                     /inference="alignment:Splign:2.1.0"
     exon            944..1050
                     /gene="Smap2"
                     /gene_synonym="RGD1308418; Smap1l"
                     /inference="alignment:Splign:2.1.0"
     exon            1051..1216
                     /gene="Smap2"
                     /gene_synonym="RGD1308418; Smap1l"
                     /inference="alignment:Splign:2.1.0"
     exon            1217..1533
                     /gene="Smap2"
                     /gene_synonym="RGD1308418; Smap1l"
                     /inference="alignment:Splign:2.1.0"
     exon            1534..2844
                     /gene="Smap2"
                     /gene_synonym="RGD1308418; Smap1l"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtaggcggtg gaggtggcgg cagagctggg cgcagctgcc agggaaaccg aggcgggaag
       61 cgcggcgggc agaccctcag caccgggggt caagtgtgcg tcccgcacgc tgaggccgag
      121 aactcgctcc gcctaagccg cttctggggt cccgcagcct ccgcgggtcc ctgccttgcc
      181 cgaagcccgc cagggggcgc cgcgctgagg ggcagcgggg cggggggcgg acggccctga
      241 ccccggggcg gctcggggtc aggcgggagg accgcctggg cagggacccc gagacctcag
      301 cccaggaccc aggcagcggt tcttgggggc gcagggggcg cgtcgccctc tgcccccgcc
      361 ggcaccctgg ccatgacagg caagtcggtg aaggacgtgg atcggtacca ggcggtcctg
      421 gccaacctgc tgctggagga agataacaag ttctgtgctg actgccagtc caaagggccg
      481 agatgggcct cctggaacat cggcgtgttt atctgcattc ggtgtgctgg aatccacagg
      541 aatctggggg tgcatatatc cagggtaaaa tcagtgaacc tcgaccagtg gactcaagaa
      601 cagattcagt gcatgcaaga gatggggaat ggaaaagcaa accgactcta tgaagcctac
      661 cttcctgaga cctttcggcg acctcagata gacccagctg ttgaaggatt tattcgagat
      721 aaatatgaga agaagaaata tatggaccga agtctggaca tcaatgtcct taggaaagag
      781 aaggatgata agtggaaacg aggaagtgag cctgctccag agaaaaagat ggaacccgtt
      841 gtctttgaga aagtaaaaat gccacagaaa aaagaagacg cacagctacc tcggaaaagc
      901 tccccgaaat ccgcagcccc tgtcatggac ttgttgggcc ttgatgctcc tgtggcctgc
      961 tctattgcaa acagtaagac cagcaatgcc ctagaaaagg atctagatct tttggcctct
     1021 gttccatccc cttcttcagt ttccagaaag gctgtaggtt ccatgccaac tgccgggagt
     1081 gctggttctg tccctgaaaa cctgaaccta tttccagagc cggggagcaa gtcagaagaa
     1141 acaggcaaga aacagctctc caaggactcc atcctgtcac tgtatggatc ccagacgcct
     1201 caaatgcctg cccaagcaat gttcatggct cctgctcaga tggcatatcc cacagcgtac
     1261 cccagcttcc ctggggttac accacctaac agcatcatgg ggagcatgat gcccccacca
     1321 gtcggcatgg tagctcaccc aggagcctct ggaatggtca cccccatggc catgcccgca
     1381 ggctatatgg ggggcatgca ggcttccatg gcgggcgtgc cgagcgggat gatgaccact
     1441 cagcaggccg gctacatggc gagcatggca gccatgcccc agactgtgta cggcgttcag
     1501 ccagctcagc aactgcagtg gaacctcact cagatgaccc agcagatggc tgggatgaac
     1561 ttctacggag ccaacggcat gatgagctat ggacagtcaa tgggcggtgg aaatggccag
     1621 gcagccaatc agactctcag tcctcagatg tggaaataaa agcaaagcac ctgtatggct
     1681 gccactctct tcggcccttg ctttcctccc tcctcttctt tcccagccct ccccttccct
     1741 ttttcctacc tctctctgtt tggtttagaa attgatcata agtcatatgc ggtttggcat
     1801 tctgcctagt ccatcccttc ccagcgtcat agacctctct cttgctttat gttgtcccct
     1861 gactgtccgg atctcctccc acccgacccc gaccccgacc ctcccagcac cagcacctta
     1921 ggattattgg cagaagaggg cacatgaact gcaggagaac atatacactg ctcagtatct
     1981 ccccttgagg ttgagcctcc tcagaccctc agaaaggtct gttaagaatg agtgcttggc
     2041 agagtggaga gtagaaaagg tcttcatttg ttataagcgg tttctaagct ctgagagttt
     2101 tgcttgaaga gggagccatc atgttcccag cctttcagga atgaaggaaa tcctgcagtc
     2161 agacaatcct gtgtcttggg tcagtctggc cctggccctg gagtgaggcc agcctttcct
     2221 atgaagatgg gcagaaatat cagtccactc actctgagtg ctgcaggatc tggagctgct
     2281 tcagtcgtca gcctttatta gcaccagaga ctccacgaat gtcccccaca gacacacaca
     2341 catctcccct ccccgccttc tgcctacctt gagccagatc tggccctgtg gctagaagag
     2401 cagcccctca gaggaaacgc agagctcaac tgcttgtgtg cgtgttgatg tgtggatccc
     2461 acatgccacc tccccatctg ctctgggtgt gtttttgttt ttatagttct aggtttacag
     2521 cagagaggag ttaatttatc agcagcctaa actgttgcca ggttgtccta cagtttaaaa
     2581 cttgccgtct cattggtagg tcccttctct tttccctttc ccatctgcca gtctttgtgc
     2641 cctcgtgtct gagtgctgat gcccaccttc tccaggtgta agaggcagag ggcctggaca
     2701 gctttctctc ggccgttgtt cactccactt gaaaattcaa acaagaaaac tttgcttcag
     2761 agatgtcatg tgtgggaacc acagcgcctg gttgcctttc tcctgtgtat gtgtaaactc
     2821 cttaataaat attgcaggga aggaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaa
//
