LOCUS       XM_003750668            2446 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus small ArfGAP 1 (Smap1), transcript
            variant X1, mRNA.
ACCESSION   XM_003750668
VERSION     XM_003750668.5
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051344.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_003750668.6.
            
            On Jan 21, 2021 this sequence version replaced XM_003750668.4.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2446
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2446
                     /gene="Smap1"
                     /note="small ArfGAP 1; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 48 ESTs, 1 long SRA read,
                     6 Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 60 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:684800"
                     /db_xref="RGD:1585595"
     CDS             243..1646
                     /gene="Smap1"
                     /codon_start=1
                     /product="stromal membrane-associated protein 1 isoform
                     X1"
                     /protein_id="XP_003750716.3"
                     /db_xref="GeneID:684800"
                     /db_xref="RGD:1585595"
                     /translation="MATRSCREKAQKLNEQHQLILSKLLREEDNKYCADCEAKGPRWA
                     SWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTPEQIQCMQDMGNTKARLLYEANL
                     PENFRRPQTDQAVEFFIRDKYEKKKYYDKNAIAITNISSSDAPLQPLVSSPSLPAAVD
                     KNKIEKEKEKKKEEKKREKEPEKPAKALTTEKLQKKEDQQPEPKKSTSPKNVAEPTVD
                     LLGLDGPAEAPVTNGNTTAAPPLSDDLDIFGPMISNPLPAAVMPQAQGTASIPAAAAL
                     STITSGDLDLFTEQTTKSEEGAKKQLSKDSILSLYGTGAQQSTPGVFMGPTNIPFTSQ
                     APTAFQGFPSMGVPVPAAPGLMGNMMGQNTGMMVGMPMHNGFMGNAQTGVMPLPQNVV
                     GPQGGMVGQMGAPQSKFGLPQAQQPQWSLSQMNQQMAAMNLSSANSSAGFGQPPSTTA
                     GWSGSSSGQTLSTQLWK"
ORIGIN      
        1 gctcgggcgg agcgtgcggc gggcccggcg aggaggcggg acacgtcggc gctgcctcgg
       61 ccgccgccgc ccctcctccg gttccagccg ccgctgccac cgccactgcc gctgccgccg
      121 ccgccgcttc ctgggccgag tccgcccgcg gccccagcgg cgccaggttc cctcgcccgc
      181 ccggcctcat cagcgccgtc cgcccgctcg cccgcgtccc ggcccgccgc cccgccgccg
      241 acatggcgac acgctcctgt cgggagaagg ctcagaagct gaacgagcag caccagctca
      301 tcctgtccaa actgctgagg gaggaggaca acaagtactg cgccgactgc gaggccaaag
      361 gtccccgatg ggcttcctgg aatattggtg tgtttatttg catcagatgt gctggaattc
      421 atagaaatct tggggttcat atatccaggg tcaagtcagt caacctagac caatggacac
      481 cagaacagat acagtgcatg caagatatgg gaaatactaa agcaagacta ctttatgaag
      541 ccaatcttcc agagaacttt cgaagaccac agacagatca agcagtagaa tttttcatca
      601 gagataaata tgaaaagaag aaatactatg ataaaaatgc catagctatc acaaatattt
      661 cctcttctga tgcccctctt cagcctttgg tatcctctcc ttctctgcca gctgctgttg
      721 ataaaaacaa aatagagaaa gaaaaggaaa aaaagaagga agagaaaaag agagaaaagg
      781 agccagaaaa gcctgccaaa gcactaacaa ctgaaaagct gcagaagaaa gaagatcaac
      841 aacctgagcc taagaaaagc accagcccga aaaatgttgc agagcccact gtggatcttc
      901 taggacttga tggtcctgct gaggcaccag tgaccaacgg aaacacgacc gcagcgccac
      961 ccctgagtga tgatctggac atttttggac caatgatttc taacccttta cccgcagccg
     1021 tcatgcccca agctcagggg accgcctcca taccagcggc tgctgccctg tccaccataa
     1081 catctgggga tctggatcta tttactgagc aaactacaaa gtcagaagaa ggagcaaaga
     1141 aacagctctc caaagactcc atcttatccc tgtatggtac aggagcacag cagagcactc
     1201 ctggtgtgtt tatgggaccc acaaatatac catttacctc acaagcaccg actgcgtttc
     1261 aaggttttcc ttccatgggc gtcccagtgc ctgcagctcc tggccttatg ggaaatatga
     1321 tgggacagaa cacaggcatg atggtgggca tgcccatgca caatggcttc atgggaaacg
     1381 cacagactgg agtgatgcca cttcctcaga atgttgttgg ccctcaggga ggaatggtag
     1441 gacagatggg tgcacctcag agtaagttcg gcctgcccca agctcagcag ccgcagtgga
     1501 gcctctcaca gatgaatcag cagatggctg ccatgaacct cagtagtgca aacagcagcg
     1561 caggttttgg ccagccgccc agcacgacag cagggtggtc tggaagctcg tcggggcaga
     1621 ctctgagcac acagctgtgg aagtaggagc tgcaacagtt tcctccacaa ccgacaccca
     1681 gcattcctcg ctacaaaggc atctagttcc catttattca tgtacatacg tattttttct
     1741 ttcccccatt tgttcacatt aagaattacc tgattgaccg tgttggtctg tgctgattaa
     1801 atttgatgtg aaagcaggtt gagaaaccat cttgtgtgga gggcagcttt gctcatattt
     1861 cccatgatgt cataagccac attgagaagc tgctcagtta acttgtataa tcggttttat
     1921 tctcaaaatt atagcgctaa cgtttgcata taagggaagt agttatcatg ttagtaatac
     1981 ctctaacagt ataagcccca cccccaaatt agccagtaat cctgtaggaa gggactgtat
     2041 gatcagatgt ttaatcatat ggtagaatgt aaatgtatca ctgagcactg ttttctagtg
     2101 tatcaagttc ttttacgcat catcgctcac tctgctgtgc tgttgtcatg atgtgcgtaa
     2161 cagggagcgt ggctagtgac ggagatagac ctggatgcac tgtaaagctc aatgaaggtt
     2221 tcagaattca aactcccgtt gcctcttgta atgtggacct cttctcatgt acatagtgct
     2281 aatatgaaga cctttttctg cactatatgc acacagggta actaaaacaa agccactttt
     2341 aatccttgaa ggtatatcca ggtttatgac agtaattgtg tttacatttt atggtgccta
     2401 gtattgacaa aatgttattt ccctatatta aacagatgaa tccaca
//
