LOCUS       NM_182817               1496 bp    mRNA    linear   ROD 28-MAR-2024
DEFINITION  Rattus norvegicus small cell adhesion glycoprotein (Smagp), mRNA.
ACCESSION   NM_182817
VERSION     NM_182817.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1496)
  AUTHORS   Tarbe,N.G., Rio,M.C., Hummel,S., Weidle,U.H. and Zoller,M.
  TITLE     Overexpression of the small transmembrane and glycosylated protein
            SMAGP supports metastasis formation of a rat pancreatic
            adenocarcinoma line
  JOURNAL   Int J Cancer 117 (6), 913-922 (2005)
   PUBMED   15986429
REFERENCE   2  (bases 1 to 1496)
  AUTHORS   Tarbe,N.G., Rio,M.C. and Weidle,U.H.
  TITLE     SMAGP, a new small trans-membrane glycoprotein altered in cancer
  JOURNAL   Oncogene 23 (19), 3395-3403 (2004)
   PUBMED   15021913
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000007.1.
            
            On Nov 27, 2020 this sequence version replaced NM_182817.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AJ577837.1, BC101910.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN16676785, SAMN16676788
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-22                JAXUCZ010000007.1  133616306-133616327 c
            23-91               JAXUCZ010000007.1  133615735-133615803 c
            92-172              JAXUCZ010000007.1  133600965-133601045 c
            173-1496            JAXUCZ010000007.1  133599043-133600366 c
FEATURES             Location/Qualifiers
     source          1..1496
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q36"
     gene            1..1496
                     /gene="Smagp"
                     /note="small cell adhesion glycoprotein"
                     /db_xref="GeneID:300236"
                     /db_xref="RGD:727777"
     exon            1..22
                     /gene="Smagp"
                     /inference="alignment:Splign:2.1.0"
     exon            23..91
                     /gene="Smagp"
                     /inference="alignment:Splign:2.1.0"
     CDS             58..351
                     /gene="Smagp"
                     /note="small cell transmembrane and glycosylated protein;
                     small trans-membrane and glycosylated protein"
                     /codon_start=1
                     /product="small cell adhesion glycoprotein"
                     /protein_id="NP_877969.1"
                     /db_xref="GeneID:300236"
                     /db_xref="RGD:727777"
                     /translation="MNNLPATPSPEELMTTPVFQAPETMSPQAEEASTALIAVVITVV
                     FLTLLSVVTLIFFYLYKNKGSYVTYEPAEGEPSAILQMETDSAKGKEKEEYFI"
     exon            92..172
                     /gene="Smagp"
                     /inference="alignment:Splign:2.1.0"
     exon            173..1496
                     /gene="Smagp"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcccgccggt cggactggaa agatctgacc ctctgagata gtctgccctc agccacgatg
       61 aacaacctac cggccacacc ttctcctgaa gaactgatga ccacgccggt ttttcaggcc
      121 cctgagacaa tgtccccaca agctgaagag gccagcacag cactcattgc agttgttata
      181 accgtggtgt tccttaccct gctctcagtg gtgaccttga tcttctttta cctgtacaag
      241 aataaaggca gctacgtcac ctatgagcct gcagaagggg agcccagcgc catcctccag
      301 atggagactg actcagccaa gggcaaagag aaggaagagt acttcatcta atgatcccca
      361 gactggaggg gccagttcct ggctccaaca ctgagacact gcctctgtag ttagggaatg
      421 taaagtggaa ttgagtgata caggcaaatt cactcacctc ccaggacaca gcccccaata
      481 ccggcatcac tgactccagg ctccagagac acggagagag ctgctcatga cgttgggcct
      541 tggtaaggac aggacaaaaa ctggccaaca aagtggggct gtgcccgagt tggaagtgag
      601 gtcacaggct ggttgatgtc ccctccctag ttgcctagca ataaccccag tgtagctatc
      661 tagtcttcct ggaggctgga taccacaaga aggggtcagg ccagggtgga taggagtctg
      721 agaatgttac tgtctttgtt tgatctgagc cccaccgttc ccccaacagt cttaaactaa
      781 cactgttttt atccaaatta aacttattat aaaagtaaga ttttcattta caagaactaa
      841 atttttcctt ggtttgctta agctttgtac agcatttttc tcttgcatgt ttaactcacc
      901 tgcttgtgtt atctcagtaa gaaagtgtaa tggagttctg caggtcctgg aactaactca
      961 tcaggagctg ggaatgagga cagccaggag gtttgtccca agatgaacat cacccaaaac
     1021 acatgaaaaa taagttggtt tgttcttaat cctggcaagg accacaatct cccagatccc
     1081 gtgtatgtat ggacagagcc aagaaagacc tggccttcaa tgccattgta aagcttttcc
     1141 ccttgagaca gggtttctcc gtggtgcccc gcctgtcctg gaacttgctc tgtagaccag
     1201 actggcctca aactaacaga cctgcctacc tctgcctcct gagtgctgga ctacagttgt
     1261 gtgtgggtca ccacagccag catcactttc atttctgagt ttacattttg agtccagaat
     1321 catctctagt ggaactcatg agagcagtca acctagactg gcagagctgc atttacttca
     1381 aagacatatt aaagaaaccg cacgggagca ctggtttctg ggtgggatgt aaaaggcatg
     1441 acacatggag aaagccttct gagcacattc taagtaaaga atgctggagt gaggtg
//
