LOCUS       XM_039103277            5479 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus SMAD family member 9 (Smad9),
            transcript variant X3, mRNA.
ACCESSION   XM_039103277
VERSION     XM_039103277.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5479
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5479
                     /gene="Smad9"
                     /gene_synonym="Madh9; Smad8"
                     /note="SMAD family member 9; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 17
                     ESTs, 1 long SRA read, 26 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 10 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:85435"
                     /db_xref="RGD:71004"
     CDS             482..1774
                     /gene="Smad9"
                     /gene_synonym="Madh9; Smad8"
                     /codon_start=1
                     /product="mothers against decapentaplegic homolog 9
                     isoform X1"
                     /protein_id="XP_038959205.1"
                     /db_xref="GeneID:85435"
                     /db_xref="RGD:71004"
                     /translation="MHPSTPISSLFSFTSPAVKRLLGWKQGDEEEKWAEKAVDSLVKK
                     LKKKKGAMDELERALSCPGQPSKCVTIPRSLDGRLQVSHRKGLPHVIYCRVWRWPDLQ
                     SHHELKPLECCEFPFGSKQKEVCINPYHYRRVETPVLPPVLVPRHSEYNPQLSLLAKF
                     RSASLHSEPLMPHNATYPDSFQQSLGPAPPSSPGHVFPQSPCPTSYPQSPGSPSESDS
                     PYQHSDFRPVCYEEPLHWCSVAYYELNNRVGETFQASSRSVLIDGFTDPSNNRNRFCL
                     GLLSNVNRNSTIENTRRHIGKGVHLYYVGGEVYAECVSDSSIFVQSRNCNYQHGFHPA
                     TVCKIPSGCSLKVFNNQLFAQLLAQSVHHGFEVVYELTKMCTIRMSFVKGWGAEYHRQ
                     DVTSTPCWIEIHLHGPLQWLDKVLTQMGSPHNPISSVS"
ORIGIN      
        1 ccagatggga aggacacttc tggggataac ctggagactc ctctgtccct gaaggctatc
       61 tgctggcacg atgtgcaggg caggcggatg cgcggcgggg cggggagcgt ggcgcggcca
      121 gggcgcttgg cccctcctgg ctggagctgc gcgcacggcc gcctggcgcc cttccagcgc
      181 ggcgcactca cgcgggcggc cgaggaggag gctccagcct gactgacgcc tctggagccg
      241 ctgtctcggt cccgccgccg cccggccggc cctgcagcta cccgcacaac cggagtgcgc
      301 gggggcacgc gtggcactgc gcggacagtt tgctgacaat gctccttcca ggcccaagaa
      361 caacatccag gagagtcagc tggccccacc tcccaagggc tttggaagaa gccggcccat
      421 ctcccaattt gaattggtcc ccactgcttc cagaaggaaa ggagcctgag gtctgcctcc
      481 tatgcacccc agcaccccca tcagctccct cttctccttc accagccccg cagtgaagag
      541 gctgctgggc tggaagcagg gagatgaaga ggagaagtgg gcagagaagg cagtggactc
      601 tttggtgaag aagttaaaga aaaagaaagg cgccatggat gaactggaga gggcgctgag
      661 ctgcccgggc cagcctagca agtgcgttac catcccacgc tccctggatg gacgcctcca
      721 ggtgtcccac cggaaggggc tgccccatgt catctactgc cgcgtgtggc gctggccaga
      781 tctgcaatcc catcatgagc tgaagccctt ggaatgctgc gagttcccgt ttggctctaa
      841 gcagaaggag gtctgcatca acccatacca ttaccgcaga gtggagaccc cagttctgcc
      901 tccagtgctg gtaccaagac acagcgagta caaccctcag ctcagcctcc tggccaagtt
      961 ccgaagtgcc tcgctgcaca gcgaaccgct catgccgcac aacgccacct accctgactc
     1021 tttccagcag tctctcggtc ccgcaccgcc ctcctcgcca ggacacgtgt ttccgcagtc
     1081 tccatgcccc accagctacc cgcagtcccc cggaagtcct tccgagtcag acagtcctta
     1141 tcaacactca gacttccggc cagtttgcta cgaggagccc ctgcactggt gctctgttgc
     1201 ctactacgaa ctgaacaacc gggtcggaga gactttccag gcatcctccc ggagtgtgct
     1261 catagatggc ttcacagacc cctccaataa caggaatagg ttctgtcttg ggcttctttc
     1321 aaatgtaaac agaaattcga cgatagaaaa caccagaagg cacattggaa agggtgtgca
     1381 tttgtactac gttgggggcg aggtgtacgc ggagtgcgtg agcgacagca gcatctttgt
     1441 ccagagccgg aactgcaact accagcacgg cttccacccg gccactgtct gcaagatccc
     1501 cagtggctgc agcctcaagg tcttcaacaa ccagctcttc gcccagctgc tcgcccagtc
     1561 agtgcaccac ggctttgaag ttgtctatga actgacgaag atgtgcacga ttcggatgag
     1621 ctttgtgaag ggctggggag ccgagtatca tcgccaggat gtcacaagca ccccctgctg
     1681 gattgagatt catcttcatg gaccactgca gtggttggac aaggtgctaa ctcagatggg
     1741 ctccccacac aaccctattt cttcagtgtc ttaagtcatg tgctcagctg catttccaca
     1801 gaatagacga aggcaggggc ttctaccact gcaactcgca gctagtacaa gaccctggac
     1861 gcagatgtaa acacgtacga tgcacacgat tcccatttct atccccattg gttctgtgct
     1921 acctacttaa cctgaggcta gtgctgtgtg gttgaagaag cacgttttcc agaccggtgt
     1981 ctgattagaa gccaagtctt ttgtgagagg gcaagcggca tgtgaagccc actgggtcag
     2041 ctcgtcactc tgcagaaggt tgtgccccag aaggaaaaca cagagctgct tacataggaa
     2101 aatacacgag cactagagca aaaccagtca aacccacatg attgcaaaaa gacctcactt
     2161 gcaatgtgaa tggcaagaaa ggagaccaag cttgttcaag gacctgcgag agaggcccca
     2221 gaaaccttct ctctgcagct gaactgtgcg tggccgcgta ctgcgctgat gtcaggtaca
     2281 gttaaccgga tttaaactgt gattggaaag ggggaaactg tgaagcctgg agtcaggctg
     2341 cctccatcta ccactgctga aacatccagc aagcaagcag caagcaaaca aaaccaaggc
     2401 tcatgaggga agacagcccg agatgagcct tggtccccag gccagggcta gcccagaatt
     2461 caggcccagg agcacagggg ctcctgcttc cactctgggc gtcagcttcc caccttccag
     2521 ctcctcctgt ctgaccttgc agatggctgt ctgccctgtg tacacggcga accctgtgct
     2581 gaggtgaagc tgcagatgga agactgggag cgaagtcgca tggcgaccta cactactagg
     2641 tggggcatcc tttgcctcat cttctctcct ggtgacaaac actaagtgat tacagatgat
     2701 ttaaacgaca gcaaagccat gggggagagc tagaggcatc actgggtcgt gtacatgtat
     2761 ttctcaatcc agtacctgag ttgattaagt tattagctgg ttacatctgt ggcagcctct
     2821 tctaaagcta tgaaatacct ggatagagcc tcccaggtga ggtaggaatg tttcatatgc
     2881 cctacaattt tttgaggaaa cagtggtagt gaataataaa gcatttttaa aaacacctta
     2941 tgtatatata cacatatata catataaaca tatatgtaca tttacacaca catgcatatt
     3001 tagcatgcat gcattaacgc ttgttatttc ctttgttgga cgataaaggg aaacatcctc
     3061 cagacttcag ggtacatgca cttgttaatc accccactgc ttctaagttt acttcgggcc
     3121 ctttgagaag cacattattt aggatggcat tcatggtttc cagggtagag cgtccactgt
     3181 ccgagatgcc ttcgttcaat ccactctgcc tagcatcgat gtatacacac tgtttgttcc
     3241 ccatacaact gtattttaag atagagatga tgatcacaag tcacacacaa tgcccactct
     3301 atctataaaa cctaccattc ttatatatac atattatgtc agaaaacaca catttcgtct
     3361 caaactacca cttagattgt ataataccca agcatgttaa ttcatacagt ctgtcttgtg
     3421 cctttgtgtg tactgggtac gatgtcaggt gctgtggaat caaatgtaca ttagcggtag
     3481 tagcccccaa ctccccaacg ccctatatct aacatttgca tagacaaata ggacaacata
     3541 ggactttaaa aacccacaca tgtgaacttt cttgggcttg aaaaataatg taaccaagtt
     3601 cttaattatt attatattgg aatttcacat cgcttcagaa caattaggta atttgtcttt
     3661 gcataactac tttcatccct agtcactcca cctcctggaa cccctatttt tctggtattt
     3721 ctcctggcct cttccttgga aaagccatgc atatgacaga tctccgagta cccatccaag
     3781 gacgcaaagt gtttgtccca gatttctaac aagtggccaa atatctctgg caatgtgtag
     3841 ctttatggaa ctattcagaa gtagaagctt ccaggtatgg tggagcctga ctttaatctc
     3901 agcagggaag agaaacagat ggatccctga gaattcaggg ctgacctggt ctacataagg
     3961 agttacagga cagccagggc tataccttga gaccctgtct caaagcaaag caaagcaaaa
     4021 caaaaaaaga agcttaaaaa caaaactaaa aaaccaaata aattacttgg ctttcctggc
     4081 agtgttaaga aatcagagaa aatactgaaa tgtgtctgag ttctttgaga aaggaatcac
     4141 aacataggtt catatgtata ttatcagaga atttagcatc aaagggatgt aagtcctatg
     4201 ctctataaca tagtcacatt ttaatgagtt tcccccttgg cggctaagag atcaaaaata
     4261 tcataaatgt aatcctttga ctttaactcc tctgagtgac catgtggcaa tcaccccatg
     4321 aaactgacaa gcaaaactat gctgcatgtg ttgttttaca gggtaacagg aaaagtgggt
     4381 agccaggcct ttacactgca aatgtgcctc ctgttgccct gggcagtgga gaactgtatc
     4441 agtttggcct gcccacaaga cccagaatgc ttatcactgt gtacaagtag gtatttgtga
     4501 gtcttaacaa ataagacatg gtcagtttgt ttcagctaaa tgatgccacc tgcttcagga
     4561 ctaagaagac accacctttt tgaacacatg cttcggtgtt gtgtagtcag caaacgcagc
     4621 aaactctcta gcatttagaa tactcttttc attgttttct gaggatgggg ttattcccag
     4681 gacaacagaa agaagagggt agtgaaaaca tcttataaac actgcttgct ggacttgaag
     4741 ctccagctta actccgaatg gtccagatat tttgtgtata tataataagt aaaatatacc
     4801 gtgcattcca catcaactta cctgctagga gtcaagagct gcactgtgca agggtaggtg
     4861 actgtcacat atgtgacagc taagttcaaa tgaaaataag cagactactg ggagtgcttt
     4921 gatgcccagc agcctggcct cccgtcctgg aaatgacaaa caccgtcatc tggtagtttg
     4981 tggtagacag tgaaacacct ttgggcttat ttttcttccg aactctagga aatacttgta
     5041 tctgatctgt ggctccttaa gatgcttaat cataagctgt tctacttaga catgggattt
     5101 ttaagaattc ttcatgctgt aaaaaagctt tggtggcact ataaaaaaaa ggcattgtgg
     5161 actatttggc attatgtgtg taattttaat gatactttgc agaattttta gagatgttta
     5221 actactcctc cgcagcttag caccagaccg cacagctcaa accctttatg gtgatgttat
     5281 tgttattaaa gagtgaattt aatacacatt gtcatttgag caccttaccg tagcagctca
     5341 tcaaggagca tgtctgtatt aagatggtta gcatgtgatg cttaaaaccc ctggatacag
     5401 agggaaactg tcactaaaaa tcatttattt tcatatgcca tgaaatatgt ttaactgatt
     5461 aaaacatttt ctaagagaa
//
