LOCUS       NM_001008307            1734 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus SLX9 ribosome biogenesis factor (Slx9), mRNA.
ACCESSION   NM_001008307 XM_215366
VERSION     NM_001008307.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1734)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000020.1.
            
            On Nov 27, 2020 this sequence version replaced NM_001008307.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC083697.1, CK841027.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-172               JAXUCZ010000020.1  11114214-11114385
            173-281             JAXUCZ010000020.1  11116251-11116359
            282-350             JAXUCZ010000020.1  11131503-11131571
            351-501             JAXUCZ010000020.1  11138253-11138403
            502-570             JAXUCZ010000020.1  11144213-11144281
            571-1734            JAXUCZ010000020.1  11145949-11147112
FEATURES             Location/Qualifiers
     source          1..1734
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /map="20p12"
     gene            1..1734
                     /gene="Slx9"
                     /gene_synonym="Fam207a; RGD1311257"
                     /note="SLX9 ribosome biogenesis factor"
                     /db_xref="GeneID:294333"
                     /db_xref="RGD:1311257"
     exon            1..172
                     /gene="Slx9"
                     /gene_synonym="Fam207a; RGD1311257"
                     /inference="alignment:Splign:2.1.0"
     CDS             35..694
                     /gene="Slx9"
                     /gene_synonym="Fam207a; RGD1311257"
                     /note="family with sequence similarity 207, member A"
                     /codon_start=1
                     /product="ribosome biogenesis protein SLX9 homolog"
                     /protein_id="NP_001008308.1"
                     /db_xref="GeneID:294333"
                     /db_xref="RGD:1311257"
                     /translation="MGKVRALRARVHRAAVRPDREATPSAVPRALEPALPQASAGGAG
                     SKDWAFVHNDIFARTQIDPSALVQRLELDQKSVVSLKRGAEPKAIVPKKEKLKLRRER
                     WLQKIEAIKLADQKLREERRRRATVVVGDLHPLRDALPELQELEAGRQQQQPRRRGTS
                     KPRPVELSRMSTAQRQQLLEEERTRFQKLLASPAYRASPLLAIGQQLAHQMQLEGGKQ
                     L"
     exon            173..281
                     /gene="Slx9"
                     /gene_synonym="Fam207a; RGD1311257"
                     /inference="alignment:Splign:2.1.0"
     exon            282..350
                     /gene="Slx9"
                     /gene_synonym="Fam207a; RGD1311257"
                     /inference="alignment:Splign:2.1.0"
     exon            351..501
                     /gene="Slx9"
                     /gene_synonym="Fam207a; RGD1311257"
                     /inference="alignment:Splign:2.1.0"
     exon            502..570
                     /gene="Slx9"
                     /gene_synonym="Fam207a; RGD1311257"
                     /inference="alignment:Splign:2.1.0"
     exon            571..1734
                     /gene="Slx9"
                     /gene_synonym="Fam207a; RGD1311257"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cggcgttgct agcaggcaga aacctcttgc aaagatgggg aaagtgaggg cgctgcgggc
       61 tcgtgtgcac cgggcagccg tgaggcccga cagggaggct acacccagcg ctgtaccccg
      121 cgccttggag ccggccctac cacaagcctc ggcgggcgga gcggggtcga aggactgggc
      181 atttgttcac aatgacatct tcgccaggac ccagatagac cctagtgctt tggtgcagag
      241 gctggagctg gaccagaaga gtgtggtgtc cctaaagaga ggtgcagagc caaaggccat
      301 tgtgcctaag aaggaaaagc tgaagcttcg ccgtgagcga tggctacaga aaattgaagc
      361 cataaagctg gcagatcaga agctcaggga ggaacggagg cgcagggcca cggtggtggt
      421 aggtgacctg caccccctga gagatgccct acctgagctg caggagctgg aggccggccg
      481 ccagcagcag caaccccgac gcagggggac cagcaagccc aggccagtgg agcttagccg
      541 gatgagcaca gcccagagac agcagcttct tgaggaagag aggacccggt ttcagaagct
      601 gctggccagc ccagcctaca gagccagtcc cctgctggct atcgggcagc agctggcaca
      661 ccagatgcag ctggaaggtg gcaaacagct ctgacccagg acagtgggtg ctgtgagatc
      721 cagaagactc agtgtgggtg gaggccacag ctctggaatc ctgccctgta actgcacggc
      781 cacctagccg gtcttgaaac ctcgggcagg ggaaggagga gctaccgctg aggacaaata
      841 aaacgactta tggactacgc tggagcccat ctgtggcttc acttccactt agagccagcc
      901 actcctgcat ttccaaggct cagctgaccc tgggatggct gtcctggttc tctgcagaac
      961 aagcccaggg tccccagcta ggggccagag ttggggtggt tgctcttgta gggatcacaa
     1021 gggctacaca agtgtgaaac tagaggcctg gcaaggagct cgattccgaa agtccctgag
     1081 gccttagcac tccttcccag ctccgactgg ggtcctggtc acagcagggc actctgccgg
     1141 ccactgtgct tctcacacca ttgctttcca ccaagccaca gctcagggct cggagctctc
     1201 ggcccaggct actcacttac ttgtcctgct acagtcagag aagcaggagg caggacagcc
     1261 ctggcccagt agtctcttgg ctggatggca agattgacct gtgtcagaca ctagtgggtt
     1321 ctccgggtga gggcagtacc cacgggactc acagctcaca ctgacacatg tcccactttg
     1381 catctgggat gtgcttatgg tactgcttac ccccaaaggt gctccctagc cttttacagg
     1441 ggcccatagc tccccagccc ctgtgagtgg ggacagggca gaacaggtga ggctcccggg
     1501 attggtatgg acacctaggg cacttggtga atgaaagtgg gtaagaccga ataggcctaa
     1561 actgcatgaa gcagaggcag gcagatctct tgagttcaag accagcctgg tctacagagc
     1621 aagttccagg acagccaggg ctacacagag aaaccctgtc tcgcaaaaaa aaaacaaaaa
     1681 aaaaaaacca aacacacaca caaacagata aataaaataa taataaaaag caaa
//
