LOCUS       NM_001271320            1422 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus SLX4 interacting protein (Slx4ip), mRNA.
ACCESSION   NM_001271320 XM_001081289
VERSION     NM_001271320.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000003.1.
            
            On Sep 15, 2012 this sequence version replaced XM_001081289.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: CV111346.1, SRR26643299.16170.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-149               JAXUCZ010000003.1  144673847-144673995
            150-207             JAXUCZ010000003.1  144685301-144685358
            208-297             JAXUCZ010000003.1  144789892-144789981
            298-418             JAXUCZ010000003.1  144794637-144794757
            419-496             JAXUCZ010000003.1  144825413-144825490
            497-585             JAXUCZ010000003.1  144828098-144828186
            586-686             JAXUCZ010000003.1  144843657-144843757
            687-1422            JAXUCZ010000003.1  144845114-144845849
FEATURES             Location/Qualifiers
     source          1..1422
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q36"
     gene            1..1422
                     /gene="Slx4ip"
                     /gene_synonym="RGD1563120"
                     /note="SLX4 interacting protein"
                     /db_xref="GeneID:499895"
                     /db_xref="RGD:1563120"
     exon            1..149
                     /gene="Slx4ip"
                     /gene_synonym="RGD1563120"
                     /inference="alignment:Splign:2.1.0"
     exon            150..207
                     /gene="Slx4ip"
                     /gene_synonym="RGD1563120"
                     /inference="alignment:Splign:2.1.0"
     CDS             181..1422
                     /gene="Slx4ip"
                     /gene_synonym="RGD1563120"
                     /codon_start=1
                     /product="protein SLX4IP"
                     /protein_id="NP_001258249.1"
                     /db_xref="GeneID:499895"
                     /db_xref="RGD:1563120"
                     /translation="MASKKFVIKCGNFAVLVDLHVLPQGSNKDSSWFSEQKKEEVCLL
                     LKETIDSRVKEYVGIYKQHRPSTAEFSRSSPLSLKGYGFQITAYFIRRGIHLRCIQSS
                     RNTELRIFPESFVVCVSQLAFGHDTWANQNEKSTQRALHGASDYFAQCAESSPPPGIK
                     LKRNTLKEIVRRAESKGTDVSKPQTSRDLVGKSSDSVITVVPRRRDASAILLSEPVGQ
                     AQDDIRAAKSHQELPVQKLENVSQTQPGDTRSQQQLHPGEWLKTGLLSRSPVYNYESA
                     SPGPKQSPRAAKTQQKRRNCGSVEDSDHRRRVSLGNEGLVPEDSVVETSTAVRVLPAL
                     ELSNPGLLLKQDLAKATAKEELHALENLSSRHLVTDNPGQARPTGSATVTERLAPVQS
                     GPSKKRKKLQSSSRGCSGKKS"
     exon            208..297
                     /gene="Slx4ip"
                     /gene_synonym="RGD1563120"
                     /inference="alignment:Splign:2.1.0"
     exon            298..418
                     /gene="Slx4ip"
                     /gene_synonym="RGD1563120"
                     /inference="alignment:Splign:2.1.0"
     exon            419..496
                     /gene="Slx4ip"
                     /gene_synonym="RGD1563120"
                     /inference="alignment:Splign:2.1.0"
     exon            497..585
                     /gene="Slx4ip"
                     /gene_synonym="RGD1563120"
                     /inference="alignment:Splign:2.1.0"
     exon            586..686
                     /gene="Slx4ip"
                     /gene_synonym="RGD1563120"
                     /inference="alignment:Splign:2.1.0"
     exon            687..1422
                     /gene="Slx4ip"
                     /gene_synonym="RGD1563120"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggacactggg aaacaggaag taggccaaag cttctgaagc ttggcccgcc gccttttagt
       61 ctgagttttc acatccaggt gctagtccac cagtgaccct ggacagtaat aacacatata
      121 aagcccgaac ccacctcctg ccaccatagg ttccgtacct catgtggaaa tcagtaaatc
      181 atggcatcta agaaatttgt catcaaatgc gggaactttg cagtcctggt ggatcttcat
      241 gtattgccac aaggttcaaa caaagattcc agttggtttt ctgaacagaa gaaagaggaa
      301 gtttgtttgc tgttaaaaga aaccattgat tccagagtta aggagtacgt gggcatttat
      361 aagcagcaca ggccatcaac tgcagaattc tcaagatcca gtcccttgtc cttaaaaggc
      421 tatggctttc agatcacagc ttatttcatc aggagaggga tacaccttcg ctgtatccag
      481 agctcccgga atacagaact tcgtatattt cctgagagct ttgtggtgtg tgttagtcag
      541 cttgcatttg gtcatgatac ttgggcaaac cagaatgaaa agtcgacaca aagagccctc
      601 catggagcgt ctgattactt tgcccagtgt gcggagagtt cacctcctcc tggcataaag
      661 ctcaagagga acacgctgaa ggaaattgtg agaagagctg aatcaaaagg cactgatgtg
      721 agcaaaccac agaccagcag ggaccttgtg ggaaaatcta gtgactcagt aattaccgtg
      781 gtaccacgga ggagggatgc ctcagccatt ctcctgtcag aacctgtggg tcaagcacaa
      841 gatgacataa gagcagccaa gagccaccag gagcttcctg ttcaaaagct ggaaaatgtc
      901 tctcagactc agccaggaga cactcgcagc cagcagcaac ttcatcctgg ggagtggtta
      961 aagacagggc ttctaagcag gagccctgtg tataactatg agtcagcatc gccaggtcca
     1021 aagcaaagtc cacgagcagc caagacacag cagaaacgca ggaattgtgg ctctgtggaa
     1081 gactctgacc accgcaggag agtttctctt ggaaatgaag gattagtccc ggaggactca
     1141 gtggtggaaa cgagcacagc tgtcagggtt ttgccagcct tagagttgtc aaatcctggg
     1201 ttgcttttga aacaagattt ggcaaaagcc acagctaaag aagagctgca tgctttggaa
     1261 aacctctcct ccagacatct tgtgacagac aacccagggc aggcgcggcc aactggctca
     1321 gccacagtca ctgaaagatt agctccagtt cagagcggcc ccagcaagaa aagaaagaaa
     1381 ctgcaaagtt ccagcagagg atgtagtggc aagaaaagct ga
//
