LOCUS       XM_056984525            4497 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus SAFB-like, transcription modulator
            (Sltm), transcript variant X1, mRNA.
ACCESSION   XM_056984525
VERSION     XM_056984525.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_056984525.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4497
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4497
                     /gene="Sltm"
                     /note="SAFB-like, transcription modulator; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 52 ESTs, 4 long SRA reads, and 100% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 83 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:315792"
                     /db_xref="RGD:1307526"
     CDS             758..3898
                     /gene="Sltm"
                     /codon_start=1
                     /product="SAFB-like transcription modulator isoform X1"
                     /protein_id="XP_056840505.1"
                     /db_xref="GeneID:315792"
                     /db_xref="RGD:1307526"
                     /translation="MAAAAAAGAVVASAASGQAEGKKITELRVIDLRSELKRRNLDIN
                     GVKTVLVSRLKQAIEEEGGDPDNIELTVSTDTPNKKPTKGKGKKQEADELSGDASVDD
                     EAFVKDCELENQETHDHDGNDELKDLEEFGENEEEIVHSQELLSTEENKKTHEFIEAE
                     AIEDREKEDIESQETEAQEGEDDTFLTAHDGDEEENEKDIAGSGDGTQEVSKPLPSEG
                     SLAEADHTAHEEMEANATGKEAEDDNISVTIQAEDAITLDFDGDDLLETGKNVKITDS
                     EASKPKDGQDAIAQSPEKEAKGYETNPNHKDGKKEDSVKADPVEKEARESSKKAESGD
                     KEKDTLKKGPSSTGASGQAKSSSKESKDSKTSSKDDKGSTGSAGGGSGSSTKNIWVSG
                     LSSNTKAADLKNLFGKYGKVLSAKVVTNARSPGAKCYGIVTMSSSTEVSRCIAHLHRT
                     ELHGQLISVEKVKGDPCKKEMKKENDEKSSSRSAGDKKSASDRSANYSGFFVLNDMVR
                     TQASIKKEEKRSSEKSEKKESKDIKKVEKEEKNDDGPSGQTSETVKKSEEKKRISSKS
                     PGHMVILNQTKGDHCRPSRRGRYEKGHGRSKEKERASLDKKRDKDYRRKEILPFEKMK
                     EQRLREHLVRFERLRQAVEFRRRKEIAERERRERERIRIIREREERERLQRERERLEI
                     ERQKLERERMERERLERERIRIEQERRREAERIAREREELRRQQQQLRYEQEKRNSLK
                     RPRDVDHRRDDPYWSENKKLSLDTDARFGHGSDYRQQSRFLDFSHRERARFPDTTSVQ
                     SSSFERRERFVGQSEGKKPRPATRREEPSFERYPKNFSDSRRNEPPPPRNELRETDRR
                     EVRGERDERRTVILHDRPEVAHPRHPRETVPNPSRPTSWKSEANMSTEKRESRVERPE
                     RSGREVSGHTVRGAPPGNRSSASGYGNREGDRGVISDRGSGAQHYPEERHVVERHGRD
                     TSGPRKEWHGPPSQGPSYHDTRRMGDGRTGAGMITQHSSTASPVNRIAQMSGNTMPRG
                     SSSGFKPFKSGPPRRF"
ORIGIN      
        1 aacacatact tttaagctaa tctcttcttg tgaacaattt ctttgagcca tcaggcccgc
       61 cgggaaggat gggcaaactg aggcaaccgc ggataagatg ttttcctggt agttttcagg
      121 caaatagggg ctaagcttca gaaggtcaca gcgcgacact gtcccctggg ctcagggcct
      181 caggaggttt cgcggggcgt tcgggggcgg aacccgtcga cctaagttca ctagtgtacc
      241 ccgacacctt tccgcggtga ttccgtactt ccgggaaggc ttgcgtacac gccccctcat
      301 ttaggaggag tactactctg tactatgggg tgcctctcat gaggcgatgg ctctaggttc
      361 gagatgcgac gagaaggcgg ctaatggaga ggcgggaacc gtagcacaga ggatagctga
      421 gcgggtggac gcgcgaggac agttaagagg ccacgctaga ggctgaacca atggtccgct
      481 cggagctccg ccccctccat gcctgcttag tgcgcacgcg cacccgtcat ccgggtgccg
      541 ctgcaggttg cgctggagct gagtcggggg cgtggtcccc gcggggggcg tggtcagcgg
      601 ctcattgtgc gcagcgtagc gcggcgccgc tggccgcccg ggccagggtt ggaagttggt
      661 gctgccgcgg ccaccgcctc caccgccgct gcctcctcct ccgccgccgc cgccctgcag
      721 cccactcgct gcctcggcag cgcgttgctt tcccaagatg gctgccgctg ccgctgccgg
      781 ggccgtggta gcctcggccg cctcagggca ggcagaaggg aagaagatca ccgagctgcg
      841 ggtcatcgac ctcaggtccg agctgaagcg ccgcaacttg gacatcaacg gggtcaagac
      901 ggtactggtc tcccggctga agcaggctat tgaagaggaa ggaggcgatc cagataatat
      961 tgaattaact gtttcaactg atactccaaa caagaaacca accaaaggca aaggtaaaaa
     1021 acaagaagca gatgagttga gtggagatgc ttctgtggac gatgaagctt ttgtcaagga
     1081 ctgtgaattg gagaatcaag agacacatga tcacgatgga aatgacgagc taaaggactt
     1141 ggaagaattt ggtgaaaatg aagaggaaat tgtgcattcc caggagttgc tttctacaga
     1201 agagaacaag aaaacccatg aatttattga ggcagaagca atagaagata gagaaaaaga
     1261 ggacatcgaa agtcaggaaa ctgaagctca agaaggtgaa gacgacacct ttctaacagc
     1321 ccacgatggt gatgaagaag aaaatgagaa agatatagca ggttctggtg atggcacaca
     1381 agaagtatct aaacctcttc cttcagaagg gagcctagct gaggctgatc acacagctca
     1441 tgaagagatg gaagctaatg cgactgggaa agaagctgag gatgacaaca tctcggtcac
     1501 aatccaggct gaagatgcca tcactctgga ttttgatggt gatgacctcc tagaaacagg
     1561 taaaaatgtg aaaattacag attctgaagc aagtaagcca aaagacgggc aggacgccat
     1621 tgcacagagc ccggagaagg aagccaaggg ttatgagacg aatccgaacc ataaagacgg
     1681 taagaaggaa gactccgtga aggctgatcc tgtcgagaag gaagccagag aaagttctaa
     1741 gaaagcagaa tctggagaca aagaaaagga tactttgaag aaagggccct cgtctacagg
     1801 ggcctctggt caagcaaaga gctcttcaaa ggaatctaaa gacagcaaga catcatctaa
     1861 agatgacaaa gggagcacag gcagtgctgg tggtggcagt ggaagctcga ctaagaatat
     1921 ctgggtcagt gggctgtctt ctaataccaa agctgctgat ctgaagaacc tctttggcaa
     1981 atatggaaag gttttgagtg caaaggtagt tacaaatgct cgaagtcctg gggcaaaatg
     2041 ctatggcatt gtaaccatgt cttcaagcac agaagtgtcc agatgcattg cccatctcca
     2101 tcgcacagag ctacacggac aactgatttc tgtggagaaa gtcaaaggtg atccttgtaa
     2161 gaaagaaatg aagaaagaaa atgatgaaaa gagcagctcg agaagtgctg gcgataaaaa
     2221 gagtgccagt gacaggagtg ccaattattc tggttttttt gtcttgaatg atatggtcag
     2281 gacacaagca tctattaaaa aagaagagaa aaggtcatct gagaaatcgg agaaaaaaga
     2341 aagcaaagat attaagaaag tagagaagga ggagaaaaac gacgatggtc caagtgggca
     2401 gacttcagag acagtgaaaa agagcgaaga gaagaaacgg ataagttcaa agagtccagg
     2461 acatatggtg atactaaacc aaaccaaggg agatcactgt aggccatcaa gaaggggcag
     2521 atatgagaaa ggtcatggaa gaagcaaaga aaaggagagg gccagcctag ataaaaaaag
     2581 agacaaagac tacagaagga aggagatctt gccttttgaa aagatgaagg aacaaagatt
     2641 gagagaacat ttagttcgtt ttgaaagact gagacaagca gtggaattca gaagacgaaa
     2701 agagattgca gaaagagagc gtcgagagcg tgaacgcatt agaataattc gtgaacggga
     2761 agaacgggaa cgcttacaga gagagagaga gcgcctagaa attgaaaggc aaaaactaga
     2821 gagagagaga atggaacgcg aacgcttgga aagggaacgc attcgtattg aacaggaacg
     2881 gcgtagggaa gctgaacgga ttgctcgaga gagagaggaa ctcagaaggc aacagcagca
     2941 gcttcgctat gaacaggaaa aaaggaattc tttgaaacgc ccacgtgatg tagaccatag
     3001 gcgagatgat ccttactgga gcgagaataa aaagttatct ctagatacag atgcacgatt
     3061 cggccacggg tctgactatc gtcaacagag caggttcctt gacttcagcc atcgagagcg
     3121 ggccaggttt cctgacacta cgtctgtgca gtcatcatcc tttgaaagac gggaacggtt
     3181 tgttggtcag agcgaaggga aaaaaccgag accagccacc cgaagagaag agccgagttt
     3241 tgaaaggtac cctaagaact tcagtgactc ccgaagaaac gagcccccac caccacgaaa
     3301 tgaactcaga gaaacggaca ggcgagaggt gcgaggggag cgagacgaga gaagaacagt
     3361 aattctccat gacaggcctg aggtcgctca ccccagacac cctcgagaaa ctgtgcccaa
     3421 tccttctaga ccaacctcct ggaaaagtga agcgaatatg tccacagaga aacgggagtc
     3481 aagagttgaa aggccagaac ggtctgggag agaagtctca gggcacactg tgaggggagc
     3541 accccctggg aatcggagta gtgcctcagg ctatggaaac cgagagggag accgaggagt
     3601 catctctgac agaggaagtg gagctcagca ctaccctgaa gaacgacatg ttgtggaacg
     3661 tcatggacgg gacacaagtg gaccaaggaa agagtggcat ggcccaccct cccaggggcc
     3721 tagctaccat gacacaagac gaatgggtga tggccggaca ggagcaggca tgataaccca
     3781 acactcaagc actgcgtctc cagttaacag gattgcacag atgagtggta acaccatgcc
     3841 gagaggaagc agctctgggt ttaagccgtt taagagtgga cctccacggc gattttaacg
     3901 caagcttcct gctgtggctt caagataatt tattgagatc tcctgtaaac tttccctgac
     3961 tgcttacgag gacgacttct gactgcttga gagttctagc tgactgttgt ttttcttttt
     4021 aaaaaaaatt taacacgatt tcttttctca attttagaga agatgtttaa atagttctgt
     4081 tgaaactttt catagttttg tgtatcattc aactttttct tgcagcactg agacccattt
     4141 gaaaggcttg gcaccaaggc tattctgttt ggcgctgtgt gaacatgagt ggtttgcagc
     4201 tgaatggcag tggttacgtc tgcagcacag ctctgtggtg tcataaatag cagtgggctc
     4261 gtctgcagca cagctctatg gtgtcaccag tgtttgctgc ctccactttg aaggctattt
     4321 gagcttcaaa cgcctgctgt ccaattttta gagaataaga ttgttccttg catttcggag
     4381 tattatgtaa cctatttttg cagaaggtac tgttacatta agtgcatctg tgtatcctgg
     4441 ttaaaaaaaa tgtaatcttt ttggaaataa accttcatat tctgtatagt tgctaaa
//
