LOCUS       NM_001106947            3964 bp    mRNA    linear   ROD 17-OCT-2024
DEFINITION  Rattus norvegicus SLIT and NTRK-like family, member 4 (Slitrk4),
            transcript variant 2, mRNA.
ACCESSION   NM_001106947 XM_001053619 XM_001053674 XM_001053734 XR_006593
VERSION     NM_001106947.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3964)
  AUTHORS   Um,J.W., Pramanik,G., Ko,J.S., Song,M.Y., Lee,D., Kim,H.,
            Park,K.S., Sudhof,T.C., Tabuchi,K. and Ko,J.
  TITLE     Calsyntenins function as synaptogenic adhesion molecules in concert
            with neurexins
  JOURNAL   Cell Rep 6 (6), 1096-1109 (2014)
   PUBMED   24613359
  REMARK    Erratum:[Cell Rep. 2024 Aug 27;43(8):114646. doi:
            10.1016/j.celrep.2024.114646. PMID: 39110596]
REFERENCE   2  (bases 1 to 3964)
  AUTHORS   Yim,Y.S., Kwon,Y., Nam,J., Yoon,H.I., Lee,K., Kim,D.G., Kim,E.,
            Kim,C.H. and Ko,J.
  TITLE     Slitrks control excitatory and inhibitory synapse formation with
            LAR receptor protein tyrosine phosphatases
  JOURNAL   Proc Natl Acad Sci U S A 110 (10), 4057-4062 (2013)
   PUBMED   23345436
  REMARK    Erratum:[Proc Natl Acad Sci U S A. 2024 Jun 18;121(25):e2410441121.
            doi: 10.1073/pnas.2410441121. PMID: 38870062]
REFERENCE   3  (bases 1 to 3964)
  AUTHORS   Aruga,J. and Mikoshiba,K.
  TITLE     Identification and characterization of Slitrk, a novel neuronal
            transmembrane protein family controlling neurite outgrowth
  JOURNAL   Mol Cell Neurosci 24 (1), 117-129 (2003)
   PUBMED   14550773
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH474019.1.
            
            On or before Oct 4, 2007 this sequence version replaced
            XR_006593.1, XM_001053674.1, XM_001053734.1, XM_001053619.1.
            
            ##Evidence-Data-START##
            CDS exon combination :: CB605676.1 [ECO:0000331]
            RNAseq introns       :: partial sample support SAMEA5760393,
                                    SAMN12840113 [ECO:0000350]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..3964
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /map="Xq36"
     gene            1..3964
                     /gene="Slitrk4"
                     /note="SLIT and NTRK-like family, member 4"
                     /db_xref="GeneID:302473"
                     /db_xref="RGD:1588563"
     exon            1..245
                     /gene="Slitrk4"
                     /inference="alignment:Splign:2.1.0"
     exon            246..316
                     /gene="Slitrk4"
                     /inference="alignment:Splign:2.1.0"
     exon            317..3964
                     /gene="Slitrk4"
                     /inference="alignment:Splign:2.1.0"
     CDS             367..2877
                     /gene="Slitrk4"
                     /note="SLIT and NTRK-like protein 4"
                     /codon_start=1
                     /product="SLIT and NTRK-like protein 4 precursor"
                     /protein_id="NP_001100417.1"
                     /db_xref="GeneID:302473"
                     /db_xref="RGD:1588563"
                     /translation="MFLWLFLIVSALISSTNADSDISVEICNVCSCVSVENVLYVNCE
                     KVSVYRPNQLKPPWSNFYHLNFQNNFLNILYPNTFVNFSHAVSLHLGNNKLQNIEGGA
                     FLGLSALKQLHLNNNELKILRADTFLGIENLEYLQADYNLIKYIERGAFNKLHKLKVL
                     ILNDNLISFLPDNIFRFASLTHLDIRGNRIQKLPYIGVLEHIGRVVELQLEDNPWNCS
                     CDLLPLKAWLENMPYNIYIGEAICETPSDLYGRLLKETNKQELCPMGTGSDFDVRILP
                     PSQLENGFTTPNGHTTQTTLHRLVTKPPKTTNPSKISGIVAGKALSNRNLSQIVSYQT
                     RVPPLTPCPAPCFCKTHPSDLGLSVNCQEKNIQSMSELTPKPLNAKKLHVNGNNIKDV
                     DISDFTEFEGLDLLHLGSNQITAIKGEVFHNLTNLRRLYLNGNQIERLYPEIFSGLHN
                     LQYLYLEYNLIKEILAGTFDSLPNLQLLYLNNNLLKSLPVYIFSGAPLARLNLRNNKF
                     MYLPVSGVLDQLQSLTQIDLEGNPWDCTCDLVALKLWLEKLNDGIVVKELKCETPVQF
                     ANIELKSLKNEILCPKLLNKPSAPFTSPAPAITLTTPLGPIRSPPGGPVPLSILILSI
                     LVVLILTVFVAFCLLVFVLRRNKKPTVKHEGLGNPECGSMQLQLRKHDHKTNKKDGLS
                     TEAFIPQTIEQMSKSHTCGLKESETGFMFSDPPGQKVMMRSAADKDKDLLHVDTRKRL
                     STIDELDELFPSRDSNVFIQNFLESKKEYNSIGVSGFEIRYPEKQDKKNKKSLIGGNH
                     SKIVVEQRKSEYFELKAKLQSSPDYLQVLEEQTALNKI"
ORIGIN      
        1 ccgcgtcgcc tccaggtcga ggtactgctc tggggaaggc aacagccgat ctctccgtcg
       61 ttctcctgca cccccacccc cacctcggcc cttgggaagg gggcagttaa ggtttccctt
      121 gtccgctgct ctggagccgc gtcgacctgc ggaccccttg gcagtggttt gcactccgca
      181 ggctcgctct ctctgcttgg acagggagcg ctaggagcgg cactctggtg gatgctggat
      241 ttgtgataaa gctgctcaaa gaccgtggca tgtggactcc tcttcttcac agtgacagac
      301 tgtggtctga gtgaagatta tttgtcttta ttcagaagca tagagttgtt tgctgattgc
      361 aagaagatgt ttctttggct ctttctgatt gtgtcagccc tgatttcttc gacaaatgca
      421 gattctgaca tatcagtgga aatttgcaat gtgtgttcct gcgtgtcagt agaaaatgtg
      481 ctctatgtca actgtgagaa ggtttcagtc tacagaccaa accagctgaa accaccttgg
      541 tctaattttt atcatctgaa tttccaaaac aattttttaa atatcctcta cccgaataca
      601 ttcgtgaatt tttctcatgc agtatctctg catctgggaa ataataagct gcagaacatt
      661 gagggtggag catttctcgg gctcagtgca ttaaagcagt tgcacttgaa caacaatgaa
      721 ttaaagattc tccgagctga cactttcctt ggcatagaga acttggagta tctccaggct
      781 gactacaatt taatcaagta tattgaacga ggagccttca ataagctcca caaactgaaa
      841 gttctcattc ttaatgacaa tctgatttca ttccttcctg ataatatttt tcgattcgca
      901 tctttaaccc atctggatat acgaggaaac agaatccaga aacttcccta tattggagtg
      961 ctagaacaca ttggccgggt tgttgagttg cagctggaag ataatccttg gaactgtagc
     1021 tgtgatttgt tgcctctaaa ggcttggttg gagaatatgc catataacat ttacataggg
     1081 gaagctattt gtgaaactcc cagtgactta tatgggaggc ttttaaagga aaccaacaaa
     1141 caagaactat gccccatggg cacagggagt gactttgacg tgcgcattct gcctccatct
     1201 caactggaga atggctttac cactcccaat ggtcacacta ctcagacaac cttgcacaga
     1261 ttagtgacca aaccacccaa aacaacaaat ccttccaaaa tctctggaat tgtggcaggc
     1321 aaagccctct ccaacagaaa tctcagtcag attgtgtcgt atcaaacaag agtgcctcct
     1381 cttacacctt gcccagcacc ttgcttttgc aaaacacatc cttctgattt ggggttaagt
     1441 gtgaattgcc aagagaaaaa tatacagtcc atgtctgaat tgacccccaa acctttaaat
     1501 gccaagaagt tgcatgtcaa tggtaataac atcaaagatg tggacatttc agacttcact
     1561 gagtttgaag gactggattt gctccattta ggcagcaatc agattacagc aatcaaagga
     1621 gaagtattcc acaatcttac taatctacgc aggctttatc tcaatggcaa tcagatcgaa
     1681 aggctgtacc ctgaaatatt ttcaggcctt cataacttgc agtatttgta tttggaatac
     1741 aacctgatta aggaaatatt agcaggcacc tttgactccc tgcccaattt gcagctactg
     1801 tacttgaaca acaatctctt aaagagcctg ccagtttaca tcttttccgg agcacctctt
     1861 gctagactga acctgagaaa caacaaattc atgtacctac ctgtcagcgg agtccttgat
     1921 cagttgcagt ctcttacaca aattgacttg gagggcaacc cttgggattg cacttgtgac
     1981 ttggtagcat taaagttgtg gctggagaag ttaaatgatg ggattgttgt gaaagaactg
     2041 aaatgtgaaa ctcctgttca gtttgccaac attgaattga agtccctcaa aaatgaaatc
     2101 ttatgtccta aactcttaaa caagccatct gcaccattca caagccctgc gcctgcaatt
     2161 acattaacca ctccgttggg tcctattcga agtcctcctg ggggcccagt gcctctgtct
     2221 attttaattt taagtatcct ggtggtcctc attttaactg tctttgttgc attttgcctt
     2281 cttgtttttg tgctgagacg caacaagaaa cccacagtga agcacgaagg tctggggaat
     2341 ccagagtgtg gctccatgca gctgcaactg aggaaacatg accacaaaac caataaaaaa
     2401 gacggactga gcacagaagc attcattcca caaaccatcg aacagatgag caaaagtcac
     2461 acctgtggcc tgaaagagtc agaaactggg ttcatgtttt cagatcctcc gggacagaag
     2521 gtcatgatga gaagtgctgc tgacaaggac aaagatttac tgcatgtgga taccaggaag
     2581 agactgagca caattgatga gctggacgaa ctattcccta gcagagattc caatgtgttt
     2641 attcagaatt ttctggaaag caaaaaggaa tataacagca ttggtgtcag tggctttgag
     2701 attcgctatc ctgaaaaaca agataagaaa aacaagaagt cactgatagg aggtaaccac
     2761 agtaaaatcg tcgtggaaca aagaaagagt gagtattttg aactgaaggc aaaacttcag
     2821 agttcccccg actacctaca ggttcttgag gagcaaacag ctttgaacaa gatataggtc
     2881 atgtaatctg acttcataca gaggacatta tttaatgatg aaagtgcctt ttgttgactt
     2941 ctaacttcca aatactatat tatcattagg catagaggca ggtgtttcca agggtatctc
     3001 attaactata gctgtaaaga tgtgtcaagt agaagagaat tcccttaata gattttacta
     3061 cataaaacct atactgtgga gtcctgtggg gatactgcaa actctattgc caaagggatg
     3121 ctttataaac ataatacact gaatttaacc tcaagaggca aatcagtttt gtgtccagat
     3181 gcaaaacctt cgtctctttg tgctttgtaa agcaaactca agaaaactgg taccagtgtt
     3241 tgtacctcag ctgggtcctt catcttgcac gtagattaag ttggtgaaac tggaataacc
     3301 cttttgattt gtggcattgt aacaactctg tgtaaagatt atctgaaaag tgtacaaaaa
     3361 caaataagca tgcaaagaga gaacatttga tagtatttgt aaattggtaa aatttatggc
     3421 ctgcatcttg aaatcgctgg atttataatg ttaaattgtg caaatacgtg tttaaaatat
     3481 accatgcatt acataattat aaaataaatt tgaacacttt aagtattacc tgtctataca
     3541 taaaaaccta aaggagaaaa aaatcaatgt gagttacata gcatttgtgg tgatctagag
     3601 aaaaacatga tgtttatcag aattaaacat ggctcaaatt aaactagagt ttgttctcag
     3661 ttatgtcaaa tacccacaat ccttaaaggt tgtccaaaat tagcaagtgc ttaccgtgtg
     3721 agcgcaccca aagctatttt tgtaacataa ttcatattta tgaagtactt tgtatactaa
     3781 ataggaaaac atgtaatcct taatatgtat ttaatatgct tgacttattc tcctgatcac
     3841 agcaaattta tcagtaagta taaatttaga taagaaaaag aaatataaaa atgaggctga
     3901 agctaatgtg tacagaaata ttttggattc tgtgatcagg tataatttaa aagcagaaaa
     3961 aaat
//
