LOCUS       NM_001107683            3322 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus SLIT and NTRK-like family, member 3 (Slitrk3),
            mRNA.
ACCESSION   NM_001107683 XM_001068121 XM_227282
VERSION     NM_001107683.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3322)
  AUTHORS   Loh,K.H., Stawski,P.S., Draycott,A.S., Udeshi,N.D., Lehrman,E.K.,
            Wilton,D.K., Svinkina,T., Deerinck,T.J., Ellisman,M.H., Stevens,B.,
            Carr,S.A. and Ting,A.Y.
  TITLE     Proteomic Analysis of Unbounded Cellular Compartments: Synaptic
            Clefts
  JOURNAL   Cell 166 (5), 1295-1307 (2016)
   PUBMED   27565350
REFERENCE   2  (bases 1 to 3322)
  AUTHORS   Um,J.W., Pramanik,G., Ko,J.S., Song,M.Y., Lee,D., Kim,H.,
            Park,K.S., Sudhof,T.C., Tabuchi,K. and Ko,J.
  TITLE     Calsyntenins function as synaptogenic adhesion molecules in concert
            with neurexins
  JOURNAL   Cell Rep 6 (6), 1096-1109 (2014)
   PUBMED   24613359
REFERENCE   3  (bases 1 to 3322)
  AUTHORS   Yim,Y.S., Kwon,Y., Nam,J., Yoon,H.I., Lee,K., Kim,D.G., Kim,E.,
            Kim,C.H. and Ko,J.
  TITLE     Slitrks control excitatory and inhibitory synapse formation with
            LAR receptor protein tyrosine phosphatases
  JOURNAL   Proc Natl Acad Sci U S A 110 (10), 4057-4062 (2013)
   PUBMED   23345436
  REMARK    Erratum:[Proc Natl Acad Sci U S A. 2024 Jun 18;121(25):e2410441121.
            doi: 10.1073/pnas.2410441121. PMID: 38870062]
REFERENCE   4  (bases 1 to 3322)
  AUTHORS   Takahashi,H., Katayama,K., Sohya,K., Miyamoto,H., Prasad,T.,
            Matsumoto,Y., Ota,M., Yasuda,H., Tsumoto,T., Aruga,J. and
            Craig,A.M.
  TITLE     Selective control of inhibitory synapse development by
            Slitrk3-PTPdelta trans-synaptic interaction
  JOURNAL   Nat Neurosci 15 (3), 389-398,S1-S2 (2012)
   PUBMED   22286174
  REMARK    Publication Status: Online-Only
REFERENCE   5  (bases 1 to 3322)
  AUTHORS   Aruga,J. and Mikoshiba,K.
  TITLE     Identification and characterization of Slitrk, a novel neuronal
            transmembrane protein family controlling neurite outgrowth
  JOURNAL   Mol Cell Neurosci 24 (1), 117-129 (2003)
   PUBMED   14550773
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473976.2.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_227282.3, XM_001068121.1.
            
            ##Evidence-Data-START##
            CDS exon combination :: CB576612.1, CB733414.1 [ECO:0000331]
            RNAseq introns       :: single sample supports all introns
                                    SAMEA5760393, SAMN14984045 [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..3322
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q32"
     gene            1..3322
                     /gene="Slitrk3"
                     /note="SLIT and NTRK-like family, member 3"
                     /db_xref="GeneID:310519"
                     /db_xref="RGD:1310506"
     exon            1..319
                     /gene="Slitrk3"
                     /inference="alignment:Splign:2.1.0"
     exon            320..3322
                     /gene="Slitrk3"
                     /inference="alignment:Splign:2.1.0"
     CDS             341..3280
                     /gene="Slitrk3"
                     /note="SLIT and NTRK-like protein 3"
                     /codon_start=1
                     /product="SLIT and NTRK-like protein 3 precursor"
                     /protein_id="NP_001101153.1"
                     /db_xref="GeneID:310519"
                     /db_xref="RGD:1310506"
                     /translation="MKPTITEMLHRGRMLWIILLSTIALGWTTPIPLIEDSEEIDEPC
                     FDPCYCEVKESLFHIHCDSKGFTNISQITEFWSRPFKLYLQRNSMRKLYTNSFLHLNN
                     AVSINLGNNALQDIQTGAFNGLKILKRLYLHENKLDVFRNDTFLGLESLEYLQADYNV
                     IKRIESGAFRNLSKLRVLILNDNLIPVLPTNLFKAVSLTHLDLRGNRLKVLFYRGMLD
                     HIGRSLMELQLEENPWNCTCEIVQLKSWLERIPYTALVGDITCETPFHFHGKDLREIK
                     KTELCPLLSDSEVEASLGIPHLSSSKENAWPTKPSSMLSSVHFTASSVEYKSSNKQPK
                     PTKQPRTPRPPSTSQALYPGPNQPPIAPYQTRPPIPIICPTGCTCNLHINDLGLTVNC
                     KERGFNNISELLPRPLNAKKLYLSSNLIQKIYRSDFWNFSSLDLLHLGNNRISYVQDG
                     AFINLPNLKSLFLNGNDIEKLTPGMFRGLQSLHYLYFEFNVIREIQPAAFSLMPNLKL
                     LFLNNNLLRTLPTDAFAGTSLARLNLRKNYFLYLPVAGVLEHLNAIVQIDLNENPWDC
                     TCDLVPFKQWIETISSVSVVGDVLCRTPENLTHRDVRTIELEVLCPEMLHIAQPGPSP
                     PQSGDYHPNGGPTSASPYDFSPPGGPVPLSVLILSLLVLFFSAVFVAAGLFAYVLRRR
                     RKKLPFRSKRQEGVDLTGIQMQCHRLFEDSGGSGGGSGSGGRPTLSSPEKAPPVGHVY
                     EYIPHPVTQMCNNPIYKPREEEEVAASAAQDTGATDRGGPGTQPPGMGEVLLGSEQFA
                     ETPKENHSNYRTLLEKEKEWALAVSNSQLNTIVTVNHHHPHPHHSAVGGVSGVGGGTG
                     GDLAGFRHHEKNGGVVLFPPGGGCGGGSLLLERERPQPAPCTVGFVDCLYGTVPKLKE
                     LHVHPPGMQYPDLQQDARLKETLLFSAGKGFTDHQTPKSDYLDLRAKLQTKPDYLEVL
                     EKTAYRF"
ORIGIN      
        1 gcacagcctg cctgtcatct ggggcaagca cagagagcaa tggtcctgag cccaccatcg
       61 ccagcttcac cgcgttaggt gcgcgccctg ctctcccatc gctatgcagc gaccatttcc
      121 ctcaaagtct aaaaggtgga ccactctaaa aggattacaa gcgtgatttg gtagcctttc
      181 cgaaagttgg tggctggaag aggggaagat cctgggcgac agaatgacgg atacaatgca
      241 gcctcgcgga gagtttgccc ctcccgctga gaagcccctt ggagcgaacc tcggagatcc
      301 tgagcgctct gcaccatagt tttgttatca accaggaacg atgaagccaa ccataactga
      361 gatgcttcac agagggagaa tgctgtggat cattcttcta agcacaattg ctctaggttg
      421 gactaccccg attcccctga ttgaggactc agaggaaata gatgagccct gttttgatcc
      481 atgctactgc gaagttaaag aaagcctctt tcacatacat tgtgacagca aaggatttac
      541 aaacattagt cagattactg aattctggtc aagacccttt aaactgtatc ttcagaggaa
      601 ttcgatgaga aaattgtaca caaatagttt tcttcacttg aataatgctg tgtccattaa
      661 ccttgggaac aatgcattgc aggacattca aactggagct tttaatggcc ttaagatttt
      721 aaaaagacta tatctccatg agaacaaact agatgtcttc agaaatgaca ccttccttgg
      781 cttagaaagt ctggaatatc ttcaggcaga ctacaatgtc attaaacgaa tagagagtgg
      841 ggcatttcgg aacctaagta aattgagggt tctaatctta aatgataatc tcatccccgt
      901 gcttccaacc aatttattta aagctgtttc cttaacccat ctggaccttc gtggaaacag
      961 gttaaaagtt ctgttctacc gtgggatgct ggatcacatt ggcagaagcc tgatggagct
     1021 ccagctagaa gagaatcctt ggaactgtac ctgtgagatt gtgcagctca agagttggct
     1081 ggagcgaatt ccttacacag ccctggtggg agacatcacc tgtgagacac ctttccactt
     1141 ccatgggaag gatctccgtg aaatcaagaa gactgaactc tgtccactct tgtctgactc
     1201 tgaggtggag gccagtctgg ggattcccca cttatcatca agcaaggaga atgcctggcc
     1261 cacgaaaccc tcctctatgt tatcttctgt ccattttact gcttcatctg ttgaatataa
     1321 atcctctaat aagcagccaa aacccaccaa acagccccga acacccagac caccatctac
     1381 atcccaggct ttatatcctg gtccaaatca acctcctatt gccccctatc agactagacc
     1441 acccattccc attatatgtc ctactgggtg tacatgtaat ttgcatatca atgaccttgg
     1501 cttgactgtc aactgcaaag aacgaggatt taacaacatc tctgaactcc ttccaaggcc
     1561 cttgaatgcc aagaagctgt acctgagtag caatcttatt cagaagatat accgctccga
     1621 tttttggaat ttttcttctt tggatctctt gcacctgggg aacaatcgca tctcctacgt
     1681 ccaggatggg gctttcatca acctgcccaa tctgaagagt ctctttctca atggcaatga
     1741 tatagaaaag ctgacaccag ggatgttccg cggtctccag agcttgcatt acttgtactt
     1801 cgaattcaac gtcatccggg aaatccaacc tgcagccttc agcctcatgc ccaacttgaa
     1861 gctgctattt ctcaacaata acttgctgag gaccctgcca actgatgcct ttgcaggcac
     1921 atccctggct cggctcaact tgaggaagaa ctactttctc tacctgccag tggctggcgt
     1981 ccttgaacac ctgaatgcca ttgtgcagat agatctcaat gagaatcctt gggactgcac
     2041 ttgtgaccta gtccccttta agcagtggat cgaaaccatc agctcagtca gcgtagtagg
     2101 tgatgtactc tgtaggaccc ctgagaacct cacccaccgt gatgtgcgca ctattgagct
     2161 ggaagtttta tgcccggaga tgctgcatat tgcccaacct ggaccatccc caccccagtc
     2221 tggagattac caccctaacg ggggaccgac aagtgcatca ccttatgact tctctcctcc
     2281 cgggggccct gtgccacttt ctgtgttgat tctcagcctg ttggttctgt tcttctcagc
     2341 tgtctttgtt gctgcaggcc tctttgccta tgtgctccgt cggcgtagga agaagctacc
     2401 ctttagaagc aagaggcagg aaggtgtgga ccttacagga atccagatgc aatgccaccg
     2461 tctgtttgag gacagtgggg gcagtggtgg tgggagcgga agtggagggc gaccaactct
     2521 gtcctcgcca gagaaagccc ctcccgtggg tcacgtgtat gagtatatac cccacccagt
     2581 tactcaaatg tgtaacaacc ccatctataa gcctcgagaa gaggaagaag tggctgcctc
     2641 agcagcacag gacacaggag ctacagaccg tggaggtcct gggacacagc caccaggaat
     2701 gggtgaggtg ctcttaggaa gtgagcagtt tgcagaaaca cccaaggaaa accacagtaa
     2761 ctaccggacc ttgctggaaa aagagaagga gtgggccctg gctgtttcca actctcaact
     2821 caacaccata gtgacggtga accatcacca ccctcaccct caccactcgg ctgttggtgg
     2881 ggtttcaggg gtaggtggag ggactggggg agacttggct gggttccgcc accatgagaa
     2941 gaatggtggg gtggtgctgt ttccccctgg gggaggttgt ggtggtggca gtctgctact
     3001 agaacgtgag aggccacagc ctgctccatg cacagtggga tttgtggact gtctctatgg
     3061 cacagtgccc aaattaaagg aactacatgt ccacccccct ggcatgcaat atccagactt
     3121 acagcaggat gccaggctga aagaaaccct tctcttctca gctggaaagg gcttcacaga
     3181 ccaccaaacc cccaaaagtg attacctcga cttaagggcc aaacttcaaa ctaagccgga
     3241 ttacctcgaa gttctggaga aaacagcata caggttctaa cagaaagaag aaaataaatt
     3301 agtggctttg ttttgatttc ca
//
