LOCUS       NM_001107587            2947 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus SLIT and NTRK-like family, member 2 (Slitrk2),
            mRNA.
ACCESSION   NM_001107587 XM_001057409 XM_219848
VERSION     NM_001107587.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2947)
  AUTHORS   Beaubien,F., Raja,R., Kennedy,T.E., Fournier,A.E. and Cloutier,J.F.
  TITLE     Slitrk1 is localized to excitatory synapses and promotes their
            development
  JOURNAL   Sci Rep 6, 27343 (2016)
   PUBMED   27273464
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2947)
  AUTHORS   Yamagata,A., Sato,Y., Goto-Ito,S., Uemura,T., Maeda,A.,
            Shiroshima,T., Yoshida,T. and Fukai,S.
  TITLE     Structure of Slitrk2-PTPdelta complex reveals mechanisms for
            splicing-dependent trans-synaptic adhesion
  JOURNAL   Sci Rep 5, 9686 (2015)
   PUBMED   25989451
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 2947)
  AUTHORS   Um,J.W., Pramanik,G., Ko,J.S., Song,M.Y., Lee,D., Kim,H.,
            Park,K.S., Sudhof,T.C., Tabuchi,K. and Ko,J.
  TITLE     Calsyntenins function as synaptogenic adhesion molecules in concert
            with neurexins
  JOURNAL   Cell Rep 6 (6), 1096-1109 (2014)
   PUBMED   24613359
REFERENCE   4  (bases 1 to 2947)
  AUTHORS   Yim,Y.S., Kwon,Y., Nam,J., Yoon,H.I., Lee,K., Kim,D.G., Kim,E.,
            Kim,C.H. and Ko,J.
  TITLE     Slitrks control excitatory and inhibitory synapse formation with
            LAR receptor protein tyrosine phosphatases
  JOURNAL   Proc Natl Acad Sci U S A 110 (10), 4057-4062 (2013)
   PUBMED   23345436
  REMARK    Erratum:[Proc Natl Acad Sci U S A. 2024 Jun 18;121(25):e2410441121.
            doi: 10.1073/pnas.2410441121. PMID: 38870062]
REFERENCE   5  (bases 1 to 2947)
  AUTHORS   Aruga,J. and Mikoshiba,K.
  TITLE     Identification and characterization of Slitrk, a novel neuronal
            transmembrane protein family controlling neurite outgrowth
  JOURNAL   Mol Cell Neurosci 24 (1), 117-129 (2003)
   PUBMED   14550773
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH474019.1.
            
            [WARNING] On Oct 18, 2024 this sequence was replaced by
            NM_001107587.2.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_001057409.1, XM_219848.3.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMEA5760393,
                              SAMEA5760396 [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..2947
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /map="Xq37"
     gene            1..2947
                     /gene="Slitrk2"
                     /gene_synonym="RGD1561361"
                     /note="SLIT and NTRK-like family, member 2"
                     /db_xref="GeneID:309349"
                     /db_xref="RGD:1561361"
     exon            1..363
                     /gene="Slitrk2"
                     /gene_synonym="RGD1561361"
                     /inference="alignment:Splign:2.1.0"
     exon            364..2947
                     /gene="Slitrk2"
                     /gene_synonym="RGD1561361"
                     /inference="alignment:Splign:2.1.0"
     CDS             407..2947
                     /gene="Slitrk2"
                     /gene_synonym="RGD1561361"
                     /note="SLIT and NTRK-like protein 2"
                     /codon_start=1
                     /product="SLIT and NTRK-like protein 2 precursor"
                     /protein_id="NP_001101057.1"
                     /db_xref="GeneID:309349"
                     /db_xref="RGD:1561361"
                     /translation="MLSGVWFLSVFTVAGILQIESRKTAKDICKIRCLCEEKENVLNI
                     NCENKGFTTVSLLQPPQYRIYQLFLNGNLLTRLYPNEFVNYSNAVTLHLGNNGLQEIR
                     PGAFSGLKTLKRLHLNNNKLEVLREDTFLGLESLEYLQADYNYISTIEAGAFSKLNKL
                     KVLILNDNLLLSLPSNVFRFVLLTHLDLRGNRLKVMPFAGVLEHIGGIMEIQLEENPW
                     NCTCDLLPLKAWLDTITVFVGEIVCETPFRLHGKDVTQLTRQDLCPRKSASGDSSQRS
                     SHSDTHVQRLSPTMNPALNPTRAPKASRPPKMRNRPTPRVTVSKDRQSFGPIMVYQTK
                     SPVALTCPSSCVCTSQSSDNGLNVNCQERKFTNISDLQPKPTSPKKLYLTGNYLQTVY
                     KNDLLEYTSLDLLHLGNNRIAVIQEGAFTNLTSLRRLYLNGNYLEVLYPSMFDGLQSL
                     QYLYLEYNVIKEIKPLTFDALINLQLLFLNNNLLRSLPDNIFGGTALTRLNLRNNHFS
                     HLPVKGVLDQLPAFIQIDLQENPWDCTCDIMGLKDWTEHANSPVIINEVTCESPAKHA
                     GEILKFLGREAICPDNPNLSDGTVLSMNHNTDTPRSLSVSPSSYPELHTEVPLSVLIL
                     GLLVVFILSVCFGAGLFVFVLKRRKGVPSVPRSATNLDVSSFQLQYGSYNTETNDKTD
                     GHVYNYIPPPVGQMCQNPIYMQKEGDPVAYYRNLQDFSYGNLEEKKEEPATLAYTISA
                     TELLEKQATPKEPELLYQNIAERAKELPSAGLVHYNFCTLPKRQFAPSYESRRQNQDR
                     INKTVLYGTPRKCFVGQSKPDHPLLQAKPQSEPDYLEVLEKQTAISQL"
ORIGIN      
        1 caaattcaaa ctgctagacg cactgctgct gctgccactg gattgaaagc gcgcgcccag
       61 gctccgctgt ggcaaccgcc cgcagtgacc cagtccgaaa aaccttccaa tgcaatctca
      121 cccctggctc cccgcagcgc agcttctttc tgttccaatc ctcctcttcc tctctggccg
      181 ccagccggat ttctaatttc tgcgcgcccc accccccgcc caatcaaatt aaatcaagaa
      241 acaaaaagca gagcatcccc cactgcaagc ggcatcttcc tttactttgc tctccttctc
      301 ttcccgaaga tgctaaacta ctggtggact gaagaagaga agagcccggt ctcctcctga
      361 tgtgtttgcc tgtaagtacc ggagctgaca tcgaaggtgc ttaaaaatgc tgagcggcgt
      421 ctggttcctc agtgtgttca cagtggccgg gatcttacag atcgagagtc gcaaaactgc
      481 caaagacatt tgcaagatcc gctgtttgtg cgaagagaag gaaaacgtac tgaacattaa
      541 ctgtgaaaac aaaggattta caactgtcag tttgcttcaa cccccccagt atcgcatcta
      601 tcagctgttt ctgaacggaa acctcttgac cagactgtat ccaaatgagt ttgttaatta
      661 ctcaaatgcg gtgactctac atctaggtaa caatgggttg caggagatcc gacctggggc
      721 atttagcggt ctgaaaactc tcaagagact gcacctcaac aacaacaaac tggaggtatt
      781 gcgagaggac acttttctag gcctagagag tctggagtac ctccaagctg actacaatta
      841 catcagcacc atcgaggcag gggcattcag caaactgaat aagctcaaag tactcatctt
      901 gaatgacaac cttttgctgt ctctgcctag taatgtattt cggttcgtcc tgctgactca
      961 tttagacctg agggggaaca ggttgaaagt aatgcctttt gctggtgtcc ttgaacatat
     1021 tggaggaatc atggaaattc agctggaaga aaacccatgg aattgcacct gtgacttact
     1081 tcctctcaag gcatggctgg acaccattac tgtttttgta ggggagattg tctgtgaaac
     1141 tcctttcagg ttacatggga aagatgtgac ccagctgacc agacaagacc tctgtcccag
     1201 aaaaagtgca agtggtgatt ctagtcagag gagcagccat tcagacacac atgtccaaag
     1261 gctgtcccct acaatgaatc ctgctctcaa cccaaccagg gctccaaaag ccagccggcc
     1321 acccaaaatg agaaatcgtc caactccccg agtgactgtg tcaaaagacc ggcagagctt
     1381 tggcccaatc atggtgtacc agaccaagtc ccccgtggcc ctcacctgtc ccagcagctg
     1441 tgtctgtacc tctcagagct cagacaatgg tctaaatgtt aactgccaag aaaggaagtt
     1501 cactaacatc tctgacctac agcccaaacc taccagtcca aagaaactct acctgacagg
     1561 gaactatctc caaacagtct ataagaatga cctcttagaa tacacttcac tggatttgtt
     1621 gcatttagga aacaacagga ttgcagtcat ccaagaaggt gcctttacaa acctgaccag
     1681 tttacgaaga ctttatctaa atggcaatta ccttgaagtg ctgtatcctt ctatgtttga
     1741 tggactgcag agcttgcagt atctctattt agagtataat gtcattaagg aaattaagcc
     1801 tctgaccttt gatgctttga ttaacctcca gctcctgttt ctgaataaca acctgctgag
     1861 gtccttacct gataatatat ttgggggcac agccctcacc aggctgaatc tgaggaacaa
     1921 tcatttttct cacctgcctg tgaaaggggt cctggaccag cttcctgctt ttatccagat
     1981 agatctgcaa gagaacccat gggactgcac ctgtgacatc atggggctta aggactggac
     2041 cgaacatgcc aattctcctg tcatcatcaa tgaggtgact tgtgaatctc ccgctaagca
     2101 tgcaggggag atactgaaat tcctgggaag ggaggctatt tgcccagata atcctaacct
     2161 gtcagatggg actgttttat caatgaatca caacacagac acacctagat cacttagtgt
     2221 gtctcctagt tcttaccccg aactacacac tgaagttcca ctctccgtct taattttagg
     2281 attgcttgtg gtttttatcc tgtctgtctg ttttggggcg gggttgttcg tctttgtcct
     2341 gaagcgtcga aagggagtgc caagtgttcc caggagtgcc accaacttag atgtaagttc
     2401 cttccagtta caatatgggt cttacaacac cgaaactaat gataaaactg atggccacgt
     2461 ctataactac attcccccac ctgtgggtca gatgtgccaa aaccccatct acatgcagaa
     2521 ggaaggagac ccagtagcct attaccgaaa ccttcaggat ttcagctatg gcaacctgga
     2581 ggaaaaaaaa gaagaacctg ccacacttgc ttacacaata agtgccactg agttgctaga
     2641 aaaacaggcc acaccaaaag agcctgagct gctgtatcag aatatcgctg agcgagctaa
     2701 ggaacttccc agtgcaggcc tagtccacta taacttttgt accttaccta aaaggcagtt
     2761 tgccccttca tatgaatctc gacgccaaaa ccaagacaga atcaataaaa ccgttttata
     2821 tgggactccc agaaaatgct ttgtggggca gtcaaagcca gaccaccctt tactgcaagc
     2881 taagccgcaa tctgaaccag actacctcga agttctggaa aaacaaactg caatcagtca
     2941 gctgtga
//
