LOCUS       NM_001107283            4039 bp    mRNA    linear   ROD 26-APR-2024
DEFINITION  Rattus norvegicus SLIT and NTRK-like family, member 1 (Slitrk1),
            mRNA.
ACCESSION   NM_001107283 XM_001077662 XM_224474
VERSION     NM_001107283.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4039)
  AUTHORS   Schroeder,A., Vanderlinden,J., Vints,K., Ribeiro,L.F.,
            Vennekens,K.M., Gounko,N.V., Wierda,K.D. and de Wit,J.
  TITLE     A Modular Organization of LRR Protein-Mediated Synaptic Adhesion
            Defines Synapse Identity
  JOURNAL   Neuron 99 (2), 329-344 (2018)
   PUBMED   29983322
REFERENCE   2  (bases 1 to 4039)
  AUTHORS   Beaubien,F., Raja,R., Kennedy,T.E., Fournier,A.E. and Cloutier,J.F.
  TITLE     Slitrk1 is localized to excitatory synapses and promotes their
            development
  JOURNAL   Sci Rep 6, 27343 (2016)
   PUBMED   27273464
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 4039)
  AUTHORS   Um,J.W., Pramanik,G., Ko,J.S., Song,M.Y., Lee,D., Kim,H.,
            Park,K.S., Sudhof,T.C., Tabuchi,K. and Ko,J.
  TITLE     Calsyntenins function as synaptogenic adhesion molecules in concert
            with neurexins
  JOURNAL   Cell Rep 6 (6), 1096-1109 (2014)
   PUBMED   24613359
REFERENCE   4  (bases 1 to 4039)
  AUTHORS   Ozomaro,U., Cai,G., Kajiwara,Y., Yoon,S., Makarov,V., Delorme,R.,
            Betancur,C., Ruhrmann,S., Falkai,P., Grabe,H.J., Maier,W.,
            Wagner,M., Lennertz,L., Moessner,R., Murphy,D.L., Buxbaum,J.D.,
            Zuchner,S. and Grice,D.E.
  TITLE     Characterization of SLITRK1 variation in obsessive-compulsive
            disorder
  JOURNAL   PLoS One 8 (8), e70376 (2013)
   PUBMED   23990902
  REMARK    Publication Status: Online-Only
REFERENCE   5  (bases 1 to 4039)
  AUTHORS   Yim,Y.S., Kwon,Y., Nam,J., Yoon,H.I., Lee,K., Kim,D.G., Kim,E.,
            Kim,C.H. and Ko,J.
  TITLE     Slitrks control excitatory and inhibitory synapse formation with
            LAR receptor protein tyrosine phosphatases
  JOURNAL   Proc Natl Acad Sci U S A 110 (10), 4057-4062 (2013)
   PUBMED   23345436
REFERENCE   6  (bases 1 to 4039)
  AUTHORS   Katayama,K., Yamada,K., Ornthanalai,V.G., Inoue,T., Ota,M.,
            Murphy,N.P. and Aruga,J.
  TITLE     Slitrk1-deficient mice display elevated anxiety-like behavior and
            noradrenergic abnormalities
  JOURNAL   Mol Psychiatry 15 (2), 177-184 (2010)
   PUBMED   18794888
REFERENCE   7  (bases 1 to 4039)
  AUTHORS   Aruga,J. and Mikoshiba,K.
  TITLE     Identification and characterization of Slitrk, a novel neuronal
            transmembrane protein family controlling neurite outgrowth
  JOURNAL   Mol Cell Neurosci 24 (1), 117-129 (2003)
   PUBMED   14550773
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473951.1.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_224474.3, XM_001077662.1.
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..4039
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="15"
                     /map="15q23"
     gene            1..4039
                     /gene="Slitrk1"
                     /note="SLIT and NTRK-like family, member 1"
                     /db_xref="GeneID:306147"
                     /db_xref="RGD:1308858"
     exon            1..4039
                     /gene="Slitrk1"
                     /inference="alignment:Splign:2.1.0"
     CDS             724..2814
                     /gene="Slitrk1"
                     /note="SLIT and NTRK-like protein 1"
                     /codon_start=1
                     /product="SLIT and NTRK-like protein 1 precursor"
                     /protein_id="NP_001100753.1"
                     /db_xref="GeneID:306147"
                     /db_xref="RGD:1308858"
                     /translation="MLLWILLLETSLCFAAGNVTGDVCKEKICSCNEIEGDLHVDCEK
                     KGFTSLQRFTAPTSQFYHLFLHGNSLTRLFPNEFANFYNAVSLHMENNGLHEIVPGAF
                     LGLQLVKRLHINNNKIKSFRKQTFLGLDDLEYLQADFNLLRDIDPGAFQDLNKLEVLI
                     LNDNLISTLPANVFQYVPITHLDLRGNRLKTLPYEEVLEQIPGIAEILLEDNPWDCTC
                     DLLSLKEWLENIPKNALIGRVVCEAPTRLQGKDLNETTEQDLCPLKNRVDSSLPAPPA
                     QEETFAPGPLPTPFKINGQDEHATPGAVPNGGTKIPGNWQLKIKPTPPIATGSARNKP
                     PVHGLPCPGGCSCDHIPGSGLKMNCNNRNVSSLADLKPKLSNVQELFLRDNKIHSIRR
                     SHFVDYKNLILLDLGNNNIANIENNTFKNLLDLRWLYMDSNYLDTLSREKFAGLQNLE
                     YLNVEYNAIQLILPGTFNAMPKLRILILNNNLLRSLPVDVFAGVSLSKLSLHNNYFMY
                     LPVAGVLDQLTSIIQIDLHGNPWECSCTIVPFKQWAERLGSEVLMSDLKCETPVNFFR
                     KDFMLLSNDEICPQLYAKISPTLTSHSKNSTGLAETGTHSNSYLDTSRVSISVLVPGL
                     LLVFVTSAFTVVGMLVFILRNRKRSKRRDANSSASEINSLQTVCDSSYWHNGPYNADG
                     AHRVYDCGSHSLSD"
ORIGIN      
        1 ggagaaaagg aacaggatgg acatccacaa aatgcagtga ttgcggaaat tttccagcgc
       61 cattggctgg gcagtgtgtc ttttgggcgg gcgtgatttc agcaccgggg gcattggaca
      121 gcacctcggg ggtacttctg ggcaacctgc aacggagaca agaactccac cagctgcctg
      181 gaccactgaa gccgccgaaa gccctgcttt gtatcagaga ggcaaggtca gtccgatgca
      241 cagccatcac aggcagtgcg cctgtactac gctgcaaacc tgcttgtttc taacatgcac
      301 ttgcttctaa ttgctagcat tgttcccttc ctggttagtg agaacctcta aacatgattc
      361 tgtacgggtg cgtttccttt taattttaca ggtatatatt taacttattt cggttatttt
      421 taaagggttg agggggagta gtttgctttc tctctctttc ctctactttc cacccccttt
      481 tctgcttgcc ttgcactatg tgcctggata gtttgtggat ataattattg actggcgtct
      541 gggctattgc agtacggggg ggttagggag gaaggaatcc acccccaccc ccccaaaccc
      601 ttcttttctc tttctctggg atcgggcatt ggagcactaa atgaacttga attgtgtctg
      661 tggcgagcag gatggttgct gttactttgt gatgagatct gggatgaatt gctcgcttta
      721 aaaatgctgc tttggattct gttgctggag acgtctcttt gttttgccgc tggaaacgtt
      781 acaggggacg tttgtaaaga gaagatctgt tcttgcaatg agatagaagg ggacttacac
      841 gtagactgtg aaaaaaaggg ctttacaagt ctgcagcgct tcacggctcc gacttcccag
      901 ttttatcatt tatttctgca tggcaattcc ctcactcgac ttttccctaa tgagttcgct
      961 aacttttata atgcggttag tttgcatatg gaaaacaatg gcttgcatga aatcgttccg
     1021 ggggcatttc tggggctgca gctggtgaaa cgactgcata tcaacaacaa caagatcaag
     1081 tcttttcgaa agcagacttt tttggggctg gacgatctgg aatacctcca ggctgatttt
     1141 aatttattac gggatataga cccgggggcc ttccaggact tgaacaagtt ggaagtcctc
     1201 attttaaacg acaatctcat cagcacccta cctgctaatg tattccagta tgtgcccatc
     1261 acccacctcg acctccgcgg aaacaggctg aaaacactgc cctatgagga ggtcttggag
     1321 cagattcctg gcattgctga gatcctgtta gaggataacc cttgggactg cacctgtgat
     1381 ctgctctccc tgaaggaatg gctggagaac attcccaaaa acgccctaat tggccgagtg
     1441 gtctgcgaag cccccaccag gctccagggt aaagacctca atgaaaccac ggaacaggac
     1501 ctgtgtcctt taaaaaacag agtggattct agtctcccgg ctccccctgc ccaggaagag
     1561 accttcgctc ctggccccct gccaactcct ttcaagataa atgggcagga cgaacatgct
     1621 accccagggg ctgttccaaa tggaggtaca aagatcccgg gcaactggca actcaaaatc
     1681 aaacccacac caccgatagc aactgggagc gccagaaaca aacccccagt gcatggcttg
     1741 ccctgccccg ggggctgcag ctgtgaccac atcccaggct cgggcttaaa gatgaactgt
     1801 aacaaccgga acgtgagcag cttggctgat ttgaagccta agctttccaa cgtgcaagag
     1861 ctcttccttc gagataacaa gatccacagc atccgaagat cacactttgt ggattacaag
     1921 aacctcattc tgttggatct gggcaacaac aacatcgcga acatagagaa caacactttc
     1981 aagaaccttt tggacctcag atggctgtac atggatagta actacctgga cactctgtcc
     2041 cgggagaaat ttgctgggct gcagaacctg gagtatctga acgtggagta caacgcgatt
     2101 cagctcattc tacccggtac tttcaatgcc atgcccaaac tgaggattct tattctcaac
     2161 aacaacttgc tgaggtccct acccgtggac gtttttgctg gggtctccct gtctaagctc
     2221 agtctgcaca ataattactt catgtacctc ccagtggcag gggtgctgga ccagttaacc
     2281 tccatcatcc agatagacct gcatggcaac ccctgggagt gctcctgcac cattgtgcct
     2341 ttcaagcaat gggcagagcg tctgggctcc gaggtgctga tgagcgacct caagtgtgag
     2401 acaccggtga acttctttag gaaggatttc atgctgctct ccaatgacga gatctgcccc
     2461 cagctgtatg cgaagatctc gcccacgtta acttcgcaca gtaaaaacag cactgggttg
     2521 gcggagaccg ggacacactc caactcctac ctagacacca gcagggtgtc catctccgtg
     2581 ttggtcccag gactgctgct ggtgttcgtc acctccgcct tcaccgtggt gggcatgctc
     2641 gtgtttatcc tgaggaaccg aaagcggtcc aagagaaggg atgccaattc ctctgcgtcc
     2701 gaaattaatt ccctacagac agtctgtgac tcttcttact ggcacaatgg gccttacaat
     2761 gcagatgggg cccatagggt gtatgactgc ggctctcact cactctcaga ctaagccccc
     2821 gaccctaaag ggggaggagt gcaggaagat gatccatcct cccctgtcgc cagcatcgcg
     2881 gtgggggagt ggaacattga cccagatcta gcgtgtcaca agccccgatg gacatgagta
     2941 aataaataac tatgaactca ctcaaggaag aggctctggc ccttaagctc ccaacagaaa
     3001 acaaagagca gactgtggcg ctgcgagtgc agcgagctag ctctttgctc tgagctcctt
     3061 ttgactcaaa gcccagcatg gggcctgcca gaagaattga gcacccttgc tctgggccaa
     3121 aggtcccctg gggctgtctg cagtggagct atacatatat acatatatca catctatata
     3181 gagaaataga tatctatttt tcccctgtgg atagcccgaa gatggctccc tgttggttat
     3241 tcagggatgg gcagttgcac gaaggcatga atgtattgta aataaataac tttgactcct
     3301 gacaagaaca aaaacaaaaa aacaaaaaac aaaaagtgct gcatggctcg catggaatcc
     3361 acacgctcca gggactacgc cccccctccc ccaaccccac tgcccactgc aactggagac
     3421 agcgtcacag cacccatcct cttacctgat aagtcccatc gtatcaaact ttctataaac
     3481 aaaatacagt ataatcagaa agtgccattt cgcccttatt tgtgattggt aggcagttca
     3541 gagcgtatgt ttactgtgaa aaaaaatgta aaggtttatt taagacactt gcatggctag
     3601 tcatcagtcc attttatgag ttaacgatgt attttgttga gcaaagtttt taaaggttgt
     3661 tttgggtttt ttttcttttg atgatgatgt ttgattttat tttagtttct gagggggaat
     3721 atttttctat acatatccaa taatgccttc catctgaatg taaaataagt acccatgatt
     3781 tctattatag taccagtgta attatttaag aaaaaagatt ctggggcagt taagcatgac
     3841 caattaatgt cactctagtg cttaggctgc gatcctatgg tagcaattgt gtgctggtaa
     3901 aaatcttact tataaagtag gaacaaagaa ccgaggaagc acgtgaaact tactaattct
     3961 attcgaggat tttataatgg catatttttt cagtattaaa gtgaaaatgt tttcaaatct
     4021 gggtccttac atttttcca
//
