LOCUS       NM_001109507            2817 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus SRA stem-loop interacting RNA binding protein
            (Slirp), mRNA; nuclear gene for mitochondrial product.
ACCESSION   NM_001109507 XM_001068036
VERSION     NM_001109507.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2817)
  AUTHORS   Colley,S.M., Wintle,L., Searles,R., Russell,V., Firman,R.C.,
            Smith,S., Deboer,K., Merriner,D.J., Genevieve,B., Bentel,J.M.,
            Stuckey,B.G., Phillips,M.R., Simmons,L.W., de Kretser,D.M.,
            O'Bryan,M.K. and Leedman,P.J.
  TITLE     Loss of the nuclear receptor corepressor SLIRP compromises male
            fertility
  JOURNAL   PLoS One 8 (8), e70700 (2013)
   PUBMED   23976951
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2817)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   3  (bases 1 to 2817)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   4  (bases 1 to 2817)
  AUTHORS   Ruzzenente,B., Metodiev,M.D., Wredenberg,A., Bratic,A., Park,C.B.,
            Camara,Y., Milenkovic,D., Zickermann,V., Wibom,R., Hultenby,K.,
            Erdjument-Bromage,H., Tempst,P., Brandt,U., Stewart,J.B.,
            Gustafsson,C.M. and Larsson,N.G.
  TITLE     LRPPRC is necessary for polyadenylation and coordination of
            translation of mitochondrial mRNAs
  JOURNAL   EMBO J 31 (2), 443-456 (2012)
   PUBMED   22045337
REFERENCE   5  (bases 1 to 2817)
  AUTHORS   Zhao,X., Leon,I.R., Bak,S., Mogensen,M., Wrzesinski,K., Hojlund,K.
            and Jensen,O.N.
  TITLE     Phosphoproteome analysis of functional mitochondria isolated from
            resting human muscle reveals extensive phosphorylation of inner
            membrane protein complexes and enzymes
  JOURNAL   Mol Cell Proteomics 10 (1), M110.000299 (2011)
   PUBMED   20833797
REFERENCE   6  (bases 1 to 2817)
  AUTHORS   Hatchell,E.C., Colley,S.M., Beveridge,D.J., Epis,M.R., Stuart,L.M.,
            Giles,K.M., Redfern,A.D., Miles,L.E., Barker,A., MacDonald,L.M.,
            Arthur,P.G., Lui,J.C., Golding,J.L., McCulloch,R.K., Metcalf,C.B.,
            Wilce,J.A., Wilce,M.C., Lanz,R.B., O'Malley,B.W. and Leedman,P.J.
  TITLE     SLIRP, a small SRA binding protein, is a nuclear receptor
            corepressor
  JOURNAL   Mol Cell 22 (5), 657-668 (2006)
   PUBMED   16762838
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000006.1.
            
            On Nov 27, 2020 this sequence version replaced NM_001109507.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643295.26203.1,
                                           SRR26643285.25530.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            gene product(s) localized to mito. :: inferred from homology
            RefSeq Select criteria             :: based on single
                                                  protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-195               JAXUCZ010000006.1  112819684-112819878
            196-254             JAXUCZ010000006.1  112823825-112823883
            255-362             JAXUCZ010000006.1  112825764-112825871
            363-2817            JAXUCZ010000006.1  112826261-112828715
FEATURES             Location/Qualifiers
     source          1..2817
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /map="6q31"
     gene            1..2817
                     /gene="Slirp"
                     /note="SRA stem-loop interacting RNA binding protein"
                     /db_xref="GeneID:688717"
                     /db_xref="RGD:1585290"
     exon            1..195
                     /gene="Slirp"
                     /inference="alignment:Splign:2.1.0"
     CDS             99..434
                     /gene="Slirp"
                     /codon_start=1
                     /product="SRA stem-loop-interacting RNA-binding protein,
                     mitochondrial"
                     /protein_id="NP_001102977.1"
                     /db_xref="GeneID:688717"
                     /db_xref="RGD:1585290"
                     /translation="MAASAVKGLTALRSRTGRPIAFIRKIPWTAASSELREHFAQFGH
                     VRRCTVPFDKETGFHRGMGWVQFSSQEELQNALQEEHHIIDGVEIHVQPQKPKVLHGA
                     QTSDEEKDF"
     exon            196..254
                     /gene="Slirp"
                     /inference="alignment:Splign:2.1.0"
     exon            255..362
                     /gene="Slirp"
                     /inference="alignment:Splign:2.1.0"
     exon            363..2817
                     /gene="Slirp"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gttgcgaaca gtttggcccg gaagcagaac tccaaattcc ggatcctgta agttcttccg
       61 aggtcacgac cccaggcttt ggttcattca gttttaacat ggcagcctcc gcggtaaaag
      121 gactaactgc gttgcgttcc cgtactggtc ggcctatagc gtttattaga aaaattcctt
      181 ggaccgcggc atcgagtgag ctaagagaac attttgctca gtttggccat gtaagaaggt
      241 gcactgtacc ttttgacaaa gagactggct ttcacagagg catgggttgg gttcagtttt
      301 cttcacagga agaacttcag aatgcactac aagaagaaca tcatattatt gatggagtag
      361 aaatccatgt tcaacctcaa aaaccaaagg ttttgcacgg ggctcaaaca tctgatgaag
      421 agaaagattt ctgacatgat cagtgtcctg tccactaaat aaacagaact tagacttttt
      481 ctaaatgtgt tttttttttt ttttttgaaa ctagtttgca ctaagcaaga acttggtttc
      541 cccactgcac agtagaagag tccaacaggg caaatgcatc tgccagcaca gttcgagtgt
      601 atgagcatcc acctactaac catttggggt aattcataaa gttcttacag aaaattttac
      661 ccctggatta gcaaggaagt agcctcaatt ttgtcagggg cagtattttt tataagtgct
      721 gcaagattgg agaggcacaa acacagacca ttctttataa aaactactgc gaaatagaat
      781 atgcattgcc tctatctcct ggatggaagg agtgttggga tctatcaccc agatttggtt
      841 tgtttttttt tttaattttt tttttaaata cagtccagtt gttatccccc tccccatcat
      901 ctctccaaaa attcctcttc ccctgtctcc aagaggatgc cccaccccac cccccacccc
      961 ccaggcttcc ccattctttg tggtctcaag tctcttgagg gttaggtcca ttttctctca
     1021 ctctggccag accaggcagt cctctgctgt atacgtcaga tttaatttca agaggcccat
     1081 ctactccttc cttcgcttct tgccttcatg ttcatgttcc ttggggcgac tgctatctga
     1141 aggtctttta gacccaccat gctgttttgc ttcttccaaa aatttgtcca aaccaaaagg
     1201 atcttcctca aactgaactg gtccttctcg gcctctcttt ctaccatctg aacctgaaaa
     1261 ctctttatca ggaacaaatc tagggggaaa agagaagaag ttatgaacta tttctgtttt
     1321 gctggtgtaa acaggaatga acagcaactg tctgcattgg tacctgttgg tctttatcct
     1381 ggtttcgagg tcatcgccat acatgtcctt gtccagattt ttactcggcc tatagatact
     1441 ctgagccata tctttgccac ctctccaggc ttgatcataa acattgtaaa tttcatcttc
     1501 tccacctgca aatccactgt ccataccctg tggaaaaaat gaatgacacc aaataaaaat
     1561 gtatacttat ccaaagctga atctaaatgc ttaggaatta atagacacac gtttacagct
     1621 aattaagaaa tcgcaactac aatatttatg taaaatagta agtatacagt tgtttataca
     1681 catttgagtt cttacttaga aactaaaatt aaatcagagt attcattaga ttaggttaat
     1741 cccagcacta atgaggcaag caggtgagtc tctgccagtc tgaatatcac gttctaagac
     1801 agccagagct atataacatt cccggtctca cacgacagca aagttctgac taaccaaaaa
     1861 taaaagacaa tggctaggcg tggtgacgca tagctttaat cccaacactc acaagcagag
     1921 gcaggcagat ctggtttaca aagtgaattc aggacagcaa ggatacacct agaacccatc
     1981 ttcaaaaccc aaaactgaag aacaaataaa aaccccaatc caagaaaaac aagacagaaa
     2041 gttggctgtg tagagaagga ggggtggatc tgggagcagg tggaggagag tgaatatggt
     2101 aaaattcaat tgtatgaagt cctcaggaaa aaaagaaaaa gaaaatcaac taaaaatgtc
     2161 attaaaattg aaggattgta ttgtgggtac tggataatga tgctgagaaa agttacctca
     2221 actgcctgag aatgtcagta ttaattaaag cacaagatca taaggtcctc aatgaaaatc
     2281 ttaaaaactt taactcagct tttaaaaggt ttaagctcaa ggtcagaaga gatggctgct
     2341 gtgaaagatt tactcctgtg gcgcctccac cccaactcct gctcagtctg gctgatgctg
     2401 caaagcagtt atgaaagaag ctttggcatc aaagcattca aggttgaatc tcagttccat
     2461 caatgactcg atcctgtctt aattatccat gagaggtaat agggtgggtg ctgcagagac
     2521 agttcagtgt taaagcagtt tctacataaa catgagggcc caggcttgga ttcctaggac
     2581 ccatgtaaat gataggtggg tgtggaagct tgcgtaactc cattctctga agatgcagac
     2641 aggaaatctc agagcaggct gggtaattct atcagtgagt tctgggatgg actgagagat
     2701 ctgcctcagt gaataatgtg gaaggcagag tgataaagac aattcccaac atcaatttcc
     2761 aacataaaca tatgcatgta cacatactgc ctacacatgc aaacatgcat acgaatg
//
