LOCUS       NM_001106400            3750 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus SMC5-SMC6 complex localization factor 1 (Slf1),
            mRNA.
ACCESSION   NM_001106400 XM_001059377 XM_226614
VERSION     NM_001106400.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3750)
  AUTHORS   Raschle,M., Smeenk,G., Hansen,R.K., Temu,T., Oka,Y., Hein,M.Y.,
            Nagaraj,N., Long,D.T., Walter,J.C., Hofmann,K., Storchova,Z.,
            Cox,J., Bekker-Jensen,S., Mailand,N. and Mann,M.
  TITLE     DNA repair. Proteomics reveals dynamic assembly of repair complexes
            during bypass of DNA cross-links
  JOURNAL   Science 348 (6234), 1253671 (2015)
   PUBMED   25931565
REFERENCE   2  (bases 1 to 3750)
  AUTHORS   Liu,T., Chen,H., Kim,H., Huen,M.S., Chen,J. and Huang,J.
  TITLE     RAD18-BRCTx interaction is required for efficient repair of
            UV-induced DNA damage
  JOURNAL   DNA Repair (Amst) 11 (2), 131-138 (2012)
   PUBMED   22036607
REFERENCE   3  (bases 1 to 3750)
  AUTHORS   Adams,D.J., van der Weyden,L., Gergely,F.V., Arends,M.J., Ng,B.L.,
            Tannahill,D., Kanaar,R., Markus,A., Morris,B.J. and Bradley,A.
  TITLE     BRCTx is a novel, highly conserved RAD18-interacting protein
  JOURNAL   Mol Cell Biol 25 (2), 779-788 (2005)
   PUBMED   15632077
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473955.1.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_226614.4, XM_001059377.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMD00132261, SAMD00132262
                              [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..3750
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q11"
     gene            1..3750
                     /gene="Slf1"
                     /gene_synonym="Ankrd32"
                     /note="SMC5-SMC6 complex localization factor 1"
                     /db_xref="GeneID:294601"
                     /db_xref="RGD:1304857"
     exon            1..112
                     /gene="Slf1"
                     /gene_synonym="Ankrd32"
                     /inference="alignment:Splign:2.1.0"
     CDS             113..3292
                     /gene="Slf1"
                     /gene_synonym="Ankrd32"
                     /note="ankyrin repeat domain-containing protein 32;
                     ankyrin repeat domain 32"
                     /codon_start=1
                     /product="SMC5-SMC6 complex localization factor protein 1"
                     /protein_id="NP_001099870.1"
                     /db_xref="GeneID:294601"
                     /db_xref="RGD:1304857"
                     /translation="MEGGATKHVIQMTGFKMEEKEALVKLLLKLDCTFIKSEKYKNCT
                     HLIAERLCKSEKFLAACAAGKWVLTKDYIIHSAKSGRWLDETTYEWGYKIEKDSHYSP
                     QMQSAPKRWREELKRTGAPGAFHRWKVVLLVRADKRSDSLVRVLEAGKANVILPRSSP
                     SGITHVIASNARISAEREQENFKAPFYPIQYLGDFLLEKEIQNDEDSQISSGRTKYNS
                     QEKSKDFKRDMGFLEMKGAGENMYRTQNKMGNHNENVNDKFVLSEHHKKKFRDFRKDM
                     KSIKKTNTFRRRAHENQKETKKKDKNVQRSYILRKKNIKEGYCKTDDAHDTTRSTLKK
                     RWSYRDQKEMKNSLLTDCAKESETKDVKANVDLTEVKNALKRQIHRDIYRAQAVRYNC
                     IRVDKQPVYNVEVKNAEFPRGILNLIESLIEGQFFKEAIEELSSLQAHYVPPVCLLHA
                     LLENVLQDNIDTFSGRYFHILSALLHLHPPWKSPAMSRYYLELFQCPTCMKGAWPLVE
                     MLVRSCLFNEGFCHQISENIGSKVAHLTLLKFFFNLLESEVRHLSQKLCDWSDSQNLK
                     VAEKAILHEIFWSGSETSGLLTKPVNMLLEWTIYSHKEKCKSNDVFKHELSYLLTGIL
                     GTAVDYWIFLGIQMGRNVIRHMSEDLGSYISLSCDDFSSKELELFICSFSSSWLQMFV
                     AEAIFKKLCLQGPTSTCTEPLSLQKIIDSYLPVLGKMDIHGAGKMQMPKKLCQRPCLE
                     SQRALLMLNGAKQKQADGRPEFLELNHAKCSSSLKKLKKKSEGESSCSKENCPSLVTK
                     MNFHKTNLKGETALHRVCIKNQVEKLIILLSLPGIDINVKDNAGWTPLHEACNYGNTV
                     CVREILQRCPEVDLLTQVDGVTPLHDALSNGHVEIGKLLLQHGGPELLQQRNSKGELP
                     LDYVLSPKDKEELFAITNIDDTVDNFHAKTQKHFYHEQLEFGSFLLSRMLISFCSIFD
                     LSSEFILAFKGLSHLNELLMACNTDTEPTSAHSDWLLDLYTRNIKTLKKLPSVLKELP
                     ENLNVCPGVHTEALLVTLEMMCQSITEVS"
     exon            113..226
                     /gene="Slf1"
                     /gene_synonym="Ankrd32"
                     /inference="alignment:Splign:2.1.0"
     exon            227..302
                     /gene="Slf1"
                     /gene_synonym="Ankrd32"
                     /inference="alignment:Splign:2.1.0"
     exon            303..543
                     /gene="Slf1"
                     /gene_synonym="Ankrd32"
                     /inference="alignment:Splign:2.1.0"
     exon            544..706
                     /gene="Slf1"
                     /gene_synonym="Ankrd32"
                     /inference="alignment:Splign:2.1.0"
     exon            707..847
                     /gene="Slf1"
                     /gene_synonym="Ankrd32"
                     /inference="alignment:Splign:2.1.0"
     exon            848..991
                     /gene="Slf1"
                     /gene_synonym="Ankrd32"
                     /inference="alignment:Splign:2.1.0"
     exon            992..1135
                     /gene="Slf1"
                     /gene_synonym="Ankrd32"
                     /inference="alignment:Splign:2.1.0"
     exon            1136..1270
                     /gene="Slf1"
                     /gene_synonym="Ankrd32"
                     /inference="alignment:Splign:2.1.0"
     exon            1271..1324
                     /gene="Slf1"
                     /gene_synonym="Ankrd32"
                     /inference="alignment:Splign:2.1.0"
     exon            1325..1483
                     /gene="Slf1"
                     /gene_synonym="Ankrd32"
                     /inference="alignment:Splign:2.1.0"
     exon            1484..1647
                     /gene="Slf1"
                     /gene_synonym="Ankrd32"
                     /inference="alignment:Splign:2.1.0"
     exon            1648..1776
                     /gene="Slf1"
                     /gene_synonym="Ankrd32"
                     /inference="alignment:Splign:2.1.0"
     exon            1777..1942
                     /gene="Slf1"
                     /gene_synonym="Ankrd32"
                     /inference="alignment:Splign:2.1.0"
     exon            1943..2090
                     /gene="Slf1"
                     /gene_synonym="Ankrd32"
                     /inference="alignment:Splign:2.1.0"
     exon            2091..2236
                     /gene="Slf1"
                     /gene_synonym="Ankrd32"
                     /inference="alignment:Splign:2.1.0"
     exon            2237..2400
                     /gene="Slf1"
                     /gene_synonym="Ankrd32"
                     /inference="alignment:Splign:2.1.0"
     exon            2401..2534
                     /gene="Slf1"
                     /gene_synonym="Ankrd32"
                     /inference="alignment:Splign:2.1.0"
     exon            2535..2627
                     /gene="Slf1"
                     /gene_synonym="Ankrd32"
                     /inference="alignment:Splign:2.1.0"
     exon            2628..2810
                     /gene="Slf1"
                     /gene_synonym="Ankrd32"
                     /inference="alignment:Splign:2.1.0"
     exon            2811..3750
                     /gene="Slf1"
                     /gene_synonym="Ankrd32"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agaacccaga ttattggagc tgtgagtact accgtggtag tcttcgccct accgccgcca
       61 ccggcagcgc cacacgaaga aaacagccct gaagtttctt tcagccggga agatggaagg
      121 tggtgccacc aaacatgtca tccagatgac agggtttaag atggaggaga aggaagctct
      181 agtcaagttg cttttaaagc tagattgcac ttttataaag agtgagaaat ataaaaactg
      241 tacacatctt atagctgaac gcctgtgcaa gagtgagaag tttttagcag cttgtgctgc
      301 aggaaaatgg gtattaacaa aggattacat aattcatagt gccaaaagtg gcagatggct
      361 tgatgaaaca acttatgaat ggggatataa aattgaaaaa gattcccatt attcacctca
      421 aatgcaatct gcaccgaaaa gatggcgtga agagctgaaa cggactggtg ctcctggagc
      481 cttccacaga tggaaagttg ttctccttgt tagggcagat aagcggagtg actctcttgt
      541 aagagttttg gaagctggaa aggcaaatgt cattttacca agaagttctc ctagtggtat
      601 aacccatgtg attgccagta atgcaagaat cagtgctgag agagaacaag aaaactttaa
      661 ggctccgttt tatccaattc agtatttagg ggattttctc ttagagaaag aaattcagaa
      721 tgatgaagat tcccaaatca gttctggtcg gaccaaatat aacagtcaag aaaaaagcaa
      781 agattttaag agagacatgg gatttcttga aatgaaaggt gctggagaaa acatgtacag
      841 aactcagaat aaaatgggaa atcataatga aaatgttaat gataagtttg ttctgagtga
      901 acatcacaaa aagaaattca gagacttcag aaaagatatg aaatctatta aaaaaacaaa
      961 tacattcaga agacgtgcac atgagaatca gaaagaaact aagaaaaaag ataaaaatgt
     1021 ccaaaggagt tacattttaa ggaaaaagaa cataaaagaa ggttattgca aaactgacga
     1081 tgcccatgac acaactagaa gtacattaaa aaagcgctgg agctacagag accagaaaga
     1141 aatgaagaat tctcttctta ctgattgtgc caaagaatca gagaccaagg atgtcaaggc
     1201 aaatgtggat ctcacggaag taaaaaatgc cttaaagagg cagatacaca gagacatata
     1261 tagagctcag gcagtccgat acaactgcat tagagtagat aaacagccgg tatacaatgt
     1321 agaggttaaa aatgcagagt tccccagagg aatattaaat ttaattgaaa gcctcataga
     1381 gggacagttc tttaaagaag ccattgaaga gctttcctct ttgcaagccc attatgtccc
     1441 tccagtgtgc cttctacatg ccctactaga gaatgttctg caggataata tagatacatt
     1501 ttctggtcga tactttcata tattatcagc tcttcttcat ctgcatcctc cttggaagtc
     1561 accagccatg tcaagatact acttagagct atttcagtgt ccaacttgta tgaaaggagc
     1621 ctggcctctc gtggagatgc tcgtcaggtc ttgtcttttc aatgaaggtt tctgccatca
     1681 aatatcagaa aacattggtt ctaaagtggc ccatcttaca ctgctcaagt tcttctttaa
     1741 cctacttgaa agtgaagtgc ggcatttgag tcaaaagtta tgtgactggt cagattctca
     1801 gaatctaaaa gtagcagaaa aggcaattct tcatgaaatt ttttggtcag gaagtgaaac
     1861 ttcaggactt ttgacaaaac cagtaaatat gcttttggaa tggactattt attctcacaa
     1921 ggaaaaatgc aagtctaatg atgtcttcaa acatgaacta tcttacttac tgactggaat
     1981 tcttggcaca gcagtagact attggatctt ccttggtatt cagatgggta gaaatgtgat
     2041 ccgacacatg tctgaggact taggaagcta tatttccctt tcctgtgatg acttttcttc
     2101 aaaagaacta gagctcttca tttgttcctt ttcatcttcc tggcttcaaa tgttcgttgc
     2161 agaagcaatc tttaaaaagc tgtgcttaca gggccccact agtacgtgca ctgagccact
     2221 ctctcttcag aaaataatag attcctattt accagttttg gggaaaatgg acatacatgg
     2281 ggctggaaag atgcagatgc caaaaaaact ctgccagcgg ccttgcctag agtctcaaag
     2341 agcgttacta atgctgaacg gtgcaaaaca gaaacaagca gacggtcggc cagagttcct
     2401 tgagttaaac catgctaaat gttcctcatc gttgaaaaag ctgaagaaga agtcagaagg
     2461 agaatcgtca tgttcgaagg agaattgccc ctctttggtt acaaagatga attttcataa
     2521 aactaatctg aaaggggaaa cagctctgca tagagtttgc ataaaaaacc aagtggagaa
     2581 attgattatt cttctctctt taccaggaat agacatcaat gttaaagaca atgctggctg
     2641 gacgcctttg catgaagcct gtaactatgg caacacagtg tgtgtccggg aaattttgca
     2701 acgttgtcca gaggtagatc tgctcactca agtggacggg gtgactcctt tgcatgatgc
     2761 actgtcaaac ggacatgtag aaattggcaa gctgcttcta cagcatgggg gcccagagct
     2821 tttacagcag aggaactcta agggggagtt gcccttggat tatgtgctgt cccctaaaga
     2881 caaggaagaa ctatttgcca ttacaaatat agacgataca gtggacaact ttcatgctaa
     2941 gacacagaaa catttttatc acgaacaact ggaatttggt tcatttttac ttagtaggat
     3001 gttgattagt ttttgttcaa tatttgattt atcctcagaa ttcatcctag ctttcaaagg
     3061 gttaagtcat ctaaatgagt tgcttatggc atgcaatact gatacagaac ccaccagtgc
     3121 acattctgac tggctactag atctttatac taggaatata aagacattaa agaagctccc
     3181 aagtgttctt aaggaactgc ctgagaatct aaatgtatgt cctggagttc atactgaggc
     3241 cttattggtg accctggaaa tgatgtgtca gtcaatcaca gaggtgtcat aatgccagaa
     3301 agtatgagtc agatttctaa acatgcaaca tgctttgtca cctaatatat ccatagcgta
     3361 tggaaaaata attaatttca gttattcact gatagcaaat tttcatagca cttaaaaaac
     3421 atctacagat ctaaaatgca ggctcaggat ttaactcaaa aagaaacaat aataaaatga
     3481 agtagttttg ttagatataa aatgctttca ctaattttta aaaaaaaaac cttcaaatat
     3541 ttatttatat tgtatatgta gaaaataatt taaatatttt ttcaaataaa aatgcccttt
     3601 cctttgagtg ctatagatct taaaatcatg gcaaggatat tcatggaaat gtgtatctat
     3661 atacttgtaa aagttgtttc ttctttttag gctagtgttt aagatgcatt tgcttttatg
     3721 tgtttttaaa taaacctttc tagaacttta
//
