LOCUS       NM_001410265            2392 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus solute carrier organic anion transporter family,
            member 6d1 (Slco6d1), mRNA.
ACCESSION   NM_001410265 XM_017596586
VERSION     NM_001410265.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2392)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000009.1.
            
            On Aug 2, 2022 this sequence version replaced XM_017596586.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643293.52381.1,
                                           SRR26360181.1872480.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760389 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-418               JAXUCZ010000009.1  105186804-105187221 c
            419-679             JAXUCZ010000009.1  105184969-105185229 c
            680-868             JAXUCZ010000009.1  105180039-105180227 c
            869-965             JAXUCZ010000009.1  105166780-105166876 c
            966-1084            JAXUCZ010000009.1  105158889-105159007 c
            1085-1194           JAXUCZ010000009.1  105155896-105156005 c
            1195-1339           JAXUCZ010000009.1  105135565-105135709 c
            1340-1535           JAXUCZ010000009.1  105122443-105122638 c
            1536-1689           JAXUCZ010000009.1  105120484-105120637 c
            1690-1877           JAXUCZ010000009.1  105115742-105115929 c
            1878-1942           JAXUCZ010000009.1  105101853-105101917 c
            1943-2080           JAXUCZ010000009.1  105099481-105099618 c
            2081-2238           JAXUCZ010000009.1  105088136-105088293 c
            2239-2392           JAXUCZ010000009.1  105073768-105073921 c
FEATURES             Location/Qualifiers
     source          1..2392
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /map="9q36"
     gene            1..2392
                     /gene="Slco6d1"
                     /note="solute carrier organic anion transporter family,
                     member 6d1"
                     /db_xref="GeneID:367321"
                     /db_xref="RGD:1359388"
     exon            1..418
                     /gene="Slco6d1"
                     /inference="alignment:Splign:2.1.0"
     CDS             124..2226
                     /gene="Slco6d1"
                     /codon_start=1
                     /product="solute carrier organic anion transporter family,
                     member 6d1"
                     /protein_id="NP_001397194.1"
                     /db_xref="GeneID:367321"
                     /db_xref="RGD:1359388"
                     /translation="MDKVKNRTSNRVEQVPVVEGDEHRETAHPRKIETYMKTVPRAMK
                     KFADIPEEKMPHSQFSDSLEEGSFGLGPLVFPCLQRFNNINCFLTAYFLGTMAHGMIF
                     GLVDQSLKVYVSELSPSKLETLTMGSGDDLAAFLVSLVGAHFGGRGNRVRWMVAACFV
                     TGLASMVFAIPFFNYEIIKLGTVTDELCIEGKKTTKVCERTVIPHKSTCIAFFNFGQF
                     LHGIAGMPFYLLAFSFIFDHVPTCSSGLYLAIADTALSVGYVLGYLVGIRNRMFPVKE
                     DMKAVGHVQQFRILQRNWWRSYFAVAVFAFCTTLPLSCFPSRLRGAQQIRLEKSKEPP
                     TIDRRLKDKEIQPGLKGVLHAIWCLLRNPLVLTQTFCQVTKSLTLKSSGYFLPKFLQS
                     HFLIVPTNASILTGMFVLPGALIGRFLGGYIVDRLQMSTKVVLKFMMVSSFISVVLFL
                     LTFFWSCETAGFAGINDDYDGLGKLGNFTAPCNEYCGCTMTDYSTICGRDEKQYFSAC
                     FAGCRASKPLRKEKAYYNCSCIKEGLTAPDDDGQFFDAVSGTCNTKCLTLPLLFAFYF
                     AATVFSNFCSVPSFMIVLKSVPASWNSMSLGVTYTIWRFLGSVPDHLLFESTSDYTCN
                     FWDINSCGEKGRCWIYNKKNLLFTFQSTWISMQISTGLLCLYGIYRHDYVVKEKNKSL
                     PIHVKDEKEKEKKSLISN"
     exon            419..679
                     /gene="Slco6d1"
                     /inference="alignment:Splign:2.1.0"
     exon            680..868
                     /gene="Slco6d1"
                     /inference="alignment:Splign:2.1.0"
     exon            869..965
                     /gene="Slco6d1"
                     /inference="alignment:Splign:2.1.0"
     exon            966..1084
                     /gene="Slco6d1"
                     /inference="alignment:Splign:2.1.0"
     exon            1085..1194
                     /gene="Slco6d1"
                     /inference="alignment:Splign:2.1.0"
     exon            1195..1339
                     /gene="Slco6d1"
                     /inference="alignment:Splign:2.1.0"
     exon            1340..1535
                     /gene="Slco6d1"
                     /inference="alignment:Splign:2.1.0"
     exon            1536..1689
                     /gene="Slco6d1"
                     /inference="alignment:Splign:2.1.0"
     exon            1690..1877
                     /gene="Slco6d1"
                     /inference="alignment:Splign:2.1.0"
     exon            1878..1942
                     /gene="Slco6d1"
                     /inference="alignment:Splign:2.1.0"
     exon            1943..2080
                     /gene="Slco6d1"
                     /inference="alignment:Splign:2.1.0"
     exon            2081..2238
                     /gene="Slco6d1"
                     /inference="alignment:Splign:2.1.0"
     exon            2239..2392
                     /gene="Slco6d1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctggaaataa cgtttcctgt agaggttcga gtggcaatga caactttact ctcctgagcc
       61 cagggagtac acaggtgcct caaaacacac ccacagagtc cttggacctg ctttggataa
      121 accatggaca aggtcaagaa cagaacatca aacagagttg agcaggttcc ggtggtcgag
      181 ggggatgaac acagggaaac tgcgcacccc aggaaaatag aaacgtacat gaaaacagtt
      241 ccaagagcaa tgaagaagtt tgcagatatt ccagaagaga aaatgccaca ttcgcaattc
      301 agtgattcct tggaggaggg gtcatttggt ttgggccctc tagttttccc ttgtttacag
      361 cgtttcaaca acattaattg cttcttgact gcgtactttt tagggaccat ggctcatggt
      421 atgatatttg gtcttgttga tcagagttta aaagtgtatg tgagtgaatt gtctccgtca
      481 aagttagaga cattaacaat gggttctggt gatgacttgg ctgctttcct tgtatcattg
      541 gttggtgcac actttggagg tagaggtaac agggtaagat ggatggtagc tgcctgcttt
      601 gtaacaggac ttgcatcgat ggtttttgct attcctttct tcaattatga aattataaaa
      661 ctgggcacag taacagatga gttgtgcata gaaggaaaaa aaacaactaa agtttgtgag
      721 cgaactgtaa taccgcacaa atcaacatgt attgctttct tcaacttcgg gcagtttctc
      781 catggaatag caggcatgcc attttatctg cttgctttct cctttatttt tgaccatgtt
      841 cccacatgct catctggatt atacctagct attgcagaca ctgcactatc ggtgggatac
      901 gttttgggat atctagtagg aatacgaaat cgtatgtttc ctgtaaaaga agatatgaaa
      961 gcagttggac atgttcagca atttcgcata ttgcagagga attggtggag gtcttatttt
     1021 gctgttgctg tatttgcatt ttgtacaact ttaccactct catgttttcc atctcgtcta
     1081 cgcggtgcac agcagataag acttgagaaa agtaaggaac ctcccaccat tgacaggaga
     1141 cttaaagata aggaaattca gcctggtttg aagggtgttc ttcatgctat ttggtgtcta
     1201 ctgaggaacc cactggtgct gacccagaca ttctgccaag tcacaaagtc tctgactctt
     1261 aagtcatctg gatattttct acccaaattt ttacaaagtc actttttaat agtaccaaca
     1321 aatgcctcta tcctcacagg aatgtttgtc cttccaggag ctttaattgg ccgttttctt
     1381 ggaggctata ttgttgacag attgcaaatg tctactaaag ttgtgttgaa atttatgatg
     1441 gtgtcatcat ttatatcagt tgtacttttc ctattaacct ttttttggtc gtgtgaaaca
     1501 gcaggctttg ctggaatcaa tgatgattat gatggccttg gcaaacttgg aaacttcaca
     1561 gctccgtgca atgagtactg tggttgcacg atgactgact atagtactat atgtggaaga
     1621 gatgagaaac aatatttttc tgcctgcttt gcaggctgca gagcttcaaa accgctaagg
     1681 aaggaaaagg catactacaa ttgttcttgc attaaagaag gattgacagc tcctgatgac
     1741 gatggtcaat tttttgatgc tgtttctgga acatgtaata ccaaatgcct tacattacct
     1801 ttgctttttg ccttttactt tgctgccaca gttttttcta atttttgtag tgtaccatcc
     1861 ttcatgattg tgttgaaaag tgtacctgcc agttggaatt caatgagtct gggtgtgaca
     1921 tatacaattt ggagattcct tggctctgtt cctgaccatc tactttttga atcaacatca
     1981 gattatactt gtaatttctg ggacattaat tcatgtgggg aaaaaggacg gtgttggatc
     2041 tataataaga aaaatttgct cttcacattt cagtcaacat ggattagcat gcaaatatca
     2101 acaggcctgc tttgtcttta tgggatttat cgacatgatt atgtggtaaa ggaaaagaat
     2161 aaaagtttgc ctatacatgt aaaggatgaa aaagaaaaag aaaaaaaaag cttgatttct
     2221 aactgatttc tccattggga gtggagaatc tgtgagtttc tgagttctaa ggacagcagt
     2281 ctttcctttg aagattttgt aagatgcagc tgtgctataa tttcagaaga aataactacc
     2341 attaaagtat ctatgtggat ctttattttc ataataaaat atttgtatga aa
//
