LOCUS       NM_001402392            3816 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus solute carrier family 9, member C2 (putative)
            (Slc9c2), mRNA.
ACCESSION   NM_001402392
VERSION     NM_001402392.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     INFERRED REFSEQ: This record is predicted by genome sequence
            analysis and is not yet supported by experimental evidence. The
            reference sequence was derived from JAXUCZ010000013.1.
            
            [WARNING] On Apr 30, 2024 this sequence was replaced by
            NM_001402392.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643293.54048.1,
                                           SRR26360181.1319027.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-156               JAXUCZ010000013.1  75984755-75984910
            157-330             JAXUCZ010000013.1  75986093-75986266
            331-431             JAXUCZ010000013.1  75988219-75988319
            432-560             JAXUCZ010000013.1  75990734-75990862
            561-726             JAXUCZ010000013.1  75992010-75992175
            727-843             JAXUCZ010000013.1  76006133-76006249
            844-1005            JAXUCZ010000013.1  76007405-76007566
            1006-1105           JAXUCZ010000013.1  76010410-76010509
            1106-1249           JAXUCZ010000013.1  76012113-76012256
            1250-1418           JAXUCZ010000013.1  76013573-76013741
            1419-1500           JAXUCZ010000013.1  76015597-76015678
            1501-1664           JAXUCZ010000013.1  76016503-76016666
            1665-1784           JAXUCZ010000013.1  76018024-76018143
            1785-1882           JAXUCZ010000013.1  76018734-76018831
            1883-2002           JAXUCZ010000013.1  76019979-76020098
            2003-2201           JAXUCZ010000013.1  76022415-76022613
            2202-2390           JAXUCZ010000013.1  76023738-76023926
            2391-2540           JAXUCZ010000013.1  76027090-76027239
            2541-2592           JAXUCZ010000013.1  76030652-76030703
            2593-2741           JAXUCZ010000013.1  76033438-76033586
            2742-2867           JAXUCZ010000013.1  76034337-76034462
            2868-2966           JAXUCZ010000013.1  76035019-76035117
            2967-3137           JAXUCZ010000013.1  76045219-76045389
            3138-3269           JAXUCZ010000013.1  76047182-76047313
            3270-3455           JAXUCZ010000013.1  76050346-76050531
            3456-3540           JAXUCZ010000013.1  76051461-76051545
            3541-3596           JAXUCZ010000013.1  76053042-76053097
            3597-3659           JAXUCZ010000013.1  76057008-76057070
            3660-3816           JAXUCZ010000013.1  76057425-76057581
FEATURES             Location/Qualifiers
     source          1..3816
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /map="13q22"
     gene            1..3816
                     /gene="Slc9c2"
                     /gene_synonym="RGD1565820"
                     /note="solute carrier family 9, member C2 (putative)"
                     /db_xref="GeneID:364029"
                     /db_xref="RGD:1565820"
     exon            1..156
                     /gene="Slc9c2"
                     /gene_synonym="RGD1565820"
                     /inference="alignment:Splign:2.1.0"
     exon            157..330
                     /gene="Slc9c2"
                     /gene_synonym="RGD1565820"
                     /inference="alignment:Splign:2.1.0"
     CDS             195..3632
                     /gene="Slc9c2"
                     /gene_synonym="RGD1565820"
                     /note="ankyrin repeat domain-containing protein 45"
                     /codon_start=1
                     /product="sodium/hydrogen exchanger 11"
                     /protein_id="NP_001389321.1"
                     /db_xref="GeneID:364029"
                     /db_xref="RGD:1565820"
                     /translation="MSNNSFSFWVARNDNKPDLLCGRPADYFVVQKHFTILICATIVL
                     GGFSRMVLKNSEVFVMIILSVSGFVTGRLAYNFIEVHQIVYPLLKTPSFSLYCYFLPL
                     IVFVAALDVDFYIVKNVFWQVLLTGLISFGTAFATISYVVLKFHEDKWDLQCCLLFSI
                     TLCIIDPLHSVNSLKMIGISKMYTDIIRGESLIICSFTCIFFGIFRGHTTNVSMFREL
                     HVIIGLSFDIFGSAVCGYWCTRVIQIILTDLFSNTLTNVVLCFSLVYMTFYLVEYFGM
                     SGIVALVTVGLNLDSLSFKPRMEFIITKFLIMCSSVYEHLIYAFFGIVIGCGEIKYFR
                     FHSLVFTVTLFVTVNFVRLLTIILVSPILMHSSYEYDWRWGVVITWSGIRGVFSLLLA
                     PDIYNFSEYKLAAPHMCIFYIQALSILTTGINSHMMLRSAKTLGLCALSLPRQMAVRN
                     ATEHIQEIIRNTITLFKTEKILTNVNWNVVEEKAKIEYNPILKQARTVPLAHISHGPR
                     EESPTDEVLIEEARLHVAIIQMSSFEKQCNDGILGVEAARILIGATKSYCPIHGKFMS
                     ISDVSTYVRARSWLIKFKNMLTYLEYHKERVLFTVPGNNKLLIFVYRIIISEEFEYAT
                     HVVTVMYIFPMIIHLWPIARELNVSALISINYYYMFLYTLESALKILILKRKYFLQNW
                     NTLDFFIIVLGIVDILCMYFVKLRPDSLVLIQFTVVIGYLRVIRFLPIFKIIIPVLIN
                     MADVQIKKSLSLMYSITKGYVKSQEDAKLLVRQISGRESIYQKLYDILERNKREAIRE
                     LGLIEHEGRDVVIALKTKQTIRNVIAKALKNLTFLWSRGIIDKHEGIEMNKVLLTKIK
                     ALNNFPMAIPPPTPDKYLPNIVWMENKDVLIEFFKERTKLTYFDYGDIICREGEMPQG
                     IFLIISGMASLHSSSATFGIDPSPRTTDRQSKTMYTEYCTSGDVLGELSCLLKREIEY
                     TAICETTLQAFFISLEDLYEGFDVFWPSLEYKMWLKLALSIANQYFESSIAGEDLKFQ
                     KCVMFNHAYVETLSSYNEMTLNHVNMKLIILVYGNVINSKTEETHVAPCIIPKSCEQI
                     QGISDVSKLLVIPTSEPVKKDATSHDVVSTGLRTTKKDYSWKRKDEFEGGHLFRKTY"
     exon            331..431
                     /gene="Slc9c2"
                     /gene_synonym="RGD1565820"
                     /inference="alignment:Splign:2.1.0"
     exon            432..560
                     /gene="Slc9c2"
                     /gene_synonym="RGD1565820"
                     /inference="alignment:Splign:2.1.0"
     exon            561..726
                     /gene="Slc9c2"
                     /gene_synonym="RGD1565820"
                     /inference="alignment:Splign:2.1.0"
     exon            727..843
                     /gene="Slc9c2"
                     /gene_synonym="RGD1565820"
                     /inference="alignment:Splign:2.1.0"
     exon            844..1005
                     /gene="Slc9c2"
                     /gene_synonym="RGD1565820"
                     /inference="alignment:Splign:2.1.0"
     exon            1006..1105
                     /gene="Slc9c2"
                     /gene_synonym="RGD1565820"
                     /inference="alignment:Splign:2.1.0"
     exon            1106..1249
                     /gene="Slc9c2"
                     /gene_synonym="RGD1565820"
                     /inference="alignment:Splign:2.1.0"
     exon            1250..1418
                     /gene="Slc9c2"
                     /gene_synonym="RGD1565820"
                     /inference="alignment:Splign:2.1.0"
     exon            1419..1500
                     /gene="Slc9c2"
                     /gene_synonym="RGD1565820"
                     /inference="alignment:Splign:2.1.0"
     exon            1501..1664
                     /gene="Slc9c2"
                     /gene_synonym="RGD1565820"
                     /inference="alignment:Splign:2.1.0"
     exon            1665..1784
                     /gene="Slc9c2"
                     /gene_synonym="RGD1565820"
                     /inference="alignment:Splign:2.1.0"
     exon            1785..1882
                     /gene="Slc9c2"
                     /gene_synonym="RGD1565820"
                     /inference="alignment:Splign:2.1.0"
     exon            1883..2002
                     /gene="Slc9c2"
                     /gene_synonym="RGD1565820"
                     /inference="alignment:Splign:2.1.0"
     exon            2003..2201
                     /gene="Slc9c2"
                     /gene_synonym="RGD1565820"
                     /inference="alignment:Splign:2.1.0"
     exon            2202..2390
                     /gene="Slc9c2"
                     /gene_synonym="RGD1565820"
                     /inference="alignment:Splign:2.1.0"
     exon            2391..2540
                     /gene="Slc9c2"
                     /gene_synonym="RGD1565820"
                     /inference="alignment:Splign:2.1.0"
     exon            2541..2592
                     /gene="Slc9c2"
                     /gene_synonym="RGD1565820"
                     /inference="alignment:Splign:2.1.0"
     exon            2593..2741
                     /gene="Slc9c2"
                     /gene_synonym="RGD1565820"
                     /inference="alignment:Splign:2.1.0"
     exon            2742..2867
                     /gene="Slc9c2"
                     /gene_synonym="RGD1565820"
                     /inference="alignment:Splign:2.1.0"
     exon            2868..2966
                     /gene="Slc9c2"
                     /gene_synonym="RGD1565820"
                     /inference="alignment:Splign:2.1.0"
     exon            2967..3137
                     /gene="Slc9c2"
                     /gene_synonym="RGD1565820"
                     /inference="alignment:Splign:2.1.0"
     exon            3138..3269
                     /gene="Slc9c2"
                     /gene_synonym="RGD1565820"
                     /inference="alignment:Splign:2.1.0"
     exon            3270..3455
                     /gene="Slc9c2"
                     /gene_synonym="RGD1565820"
                     /inference="alignment:Splign:2.1.0"
     exon            3456..3540
                     /gene="Slc9c2"
                     /gene_synonym="RGD1565820"
                     /inference="alignment:Splign:2.1.0"
     exon            3541..3596
                     /gene="Slc9c2"
                     /gene_synonym="RGD1565820"
                     /inference="alignment:Splign:2.1.0"
     exon            3597..3659
                     /gene="Slc9c2"
                     /gene_synonym="RGD1565820"
                     /inference="alignment:Splign:2.1.0"
     exon            3660..3816
                     /gene="Slc9c2"
                     /gene_synonym="RGD1565820"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtgggaataa tgagctcagc caatcagaac aaaagcaggc cggcaagaaa ccaatgggaa
       61 gtcagtatgg aaacagcttt tgctttggta tcggttggtg gtacggaccc tggcaaacag
      121 cacaactccg cagaactgag ccctgttctt tgaaagaata gtctgccata gtgcaagtta
      181 gtcctggaga agcaatgtcg aacaacagtt tttctttctg ggtggcaaga aatgacaaca
      241 agcctgatct actgtgtggg aggccggctg attactttgt ggtccagaag catttcacaa
      301 ttcttatatg tgccactatt gttttgggag ggttttcaag gatggtttta aagaattctg
      361 aagtctttgt catgataatt ctctctgtgt cgggatttgt gacagggcga ctggcttaca
      421 attttattga ggtgcaccaa attgtctacc ctcttctaaa aacgccaagc ttttcactgt
      481 attgttattt tttaccttta attgtattcg tggctgcttt ggacgtggac ttttatatag
      541 tcaagaacgt gttttggcag gtcttgctaa ccggactgat cagttttggc acagcgtttg
      601 ctactatttc ctacgtggtc ctgaaattcc acgaggacaa gtgggatctg cagtgctgtc
      661 tgctcttcag catcacgctg tgtatcatag accctctgca ctccgtcaac tcgctgaaga
      721 tgatcggcat ttctaagatg tacacggata tcatcagagg agagtcgctg atcatttgta
      781 gcttcacatg cattttcttt ggaatttttc gaggccacac aactaacgtt tccatgttca
      841 gggagttaca tgtaatcatc gggctcagct ttgatatttt tggaagcgca gtatgtggat
      901 attggtgtac gagagtcatt cagattatat tgaccgacct ctttagcaac acactgacga
      961 acgttgttct ctgtttttca ctggtgtaca tgacttttta ccttgtggaa tattttggaa
     1021 tgtcgggcat tgttgctttg gtcacagtag gcctgaattt ggattcttta agctttaaac
     1081 cgaggatgga gttcataatt actaagttct taataatgtg ttcgtctgta tatgaacact
     1141 taatatatgc cttctttggc attgttatcg gctgtggaga aatcaagtat ttcagatttc
     1201 actccctagt tttcactgtg actttatttg taacagtgaa ttttgtaagg ctgctcacta
     1261 ttattttagt gagccccatt ttgatgcatt caagctatga gtatgactgg cgatggggag
     1321 ttgttatcac gtggtccgga atcagaggcg tctttagctt actgttggct cctgatattt
     1381 acaatttttc tgaatacaaa ttagcggcgc cacatatgtg tatattctat atacaagcac
     1441 tgtcaatact gaccacagga ataaattcac atatgatgct ccggtcagcc aagacattag
     1501 gcttgtgtgc tctctccctc ccaagacaaa tggccgttcg aaatgccacc gaacacatac
     1561 aggagattat acggaacaca atcactttat ttaagacaga gaaaatattg acaaacgtta
     1621 actggaacgt agtagaagaa aaagccaaga ttgaatacaa tcctatttta aaacaggctc
     1681 gcactgttcc acttgcccat atttcgcatg gtccaagaga ggagtcgcca accgatgaag
     1741 ttttaataga agaggccaga ttgcatgtag ctataataca aatgagcagt tttgaaaagc
     1801 agtgtaatga cggcatcctg ggagttgagg cagctcgaat actaatcggt gccaccaaaa
     1861 gctactgccc catccatgga aaattcatga gtatttctga tgtttcaact tacgtgagag
     1921 ctagaagttg gcttataaag tttaaaaaca tgttaactta cttggaatat cacaaagaaa
     1981 gggtactttt tacggtacct gggaataata agcttctgat ttttgtctat cgcattataa
     2041 tttcagaaga atttgaatat gcaacacatg ttgtgacagt aatgtatatt ttccctatga
     2101 taatacatct gtggccaatt gcaagagagt taaatgtatc ggcactgata tccataaact
     2161 actactatat gtttttatat acattggaat cagcactgaa gatactaatt ttaaaaagga
     2221 aatattttct tcagaattgg aatactttgg actttttcat catagtcctc ggaatcgttg
     2281 atatattgtg catgtacttc gtcaagctga gaccagacag cttggttctc atccagttta
     2341 cggtggtcat agggtatcta agagtgatta ggtttcttcc cattttcaag ataataatac
     2401 cagtactcat aaacatggca gacgtacaga tcaagaagag cctcagtttg atgtacagta
     2461 ttacaaaagg ctatgtcaaa agtcaggaag atgccaagct tttggtaagg caaatttctg
     2521 gacgtgaatc aatctatcag aaattatatg acattctaga aagaaacaaa cgagaggcta
     2581 ttagagaact aggcctcatt gaacatgaag gccgtgacgt tgtcattgct ctgaagacaa
     2641 agcagacgat ccgcaacgtg attgccaagg ccctaaaaaa cctcaccttt ctttggtcaa
     2701 gaggcatcat tgacaagcat gagggcatcg agatgaacaa ggttcttctt acaaaaataa
     2761 aagccttgaa taactttcca atggcgatcc cacctcccac ccctgacaaa taccttccca
     2821 acatcgtctg gatggaaaat aaagacgttc tcattgagtt cttcaaggaa agaaccaaac
     2881 tgacctactt tgactacggg gatatcattt gtagagaagg tgaaatgccg caaggaatct
     2941 tcttgattat ttcaggaatg gcgagtttac atagctcatc tgccactttt gggatagacc
     3001 caagcccgag gactactgac agacagtcca agactatgta tacagagtac tgtaccagtg
     3061 gggatgtact tggcgagctg agctgtttgc ttaagcgtga aatcgaatat acggccatct
     3121 gtgaaactac gctgcaggcc ttcttcatct ccttggagga tttatatgaa ggttttgatg
     3181 tcttctggcc atctctagaa tataaaatgt ggctcaagct tgctcttagc attgcaaatc
     3241 agtattttga atcaagcatt gctggtgagg atttaaagtt tcagaagtgt gtgatgttca
     3301 atcacgccta tgtggagact ctgtcaagct ataatgaaat gacccttaat cacgtgaata
     3361 tgaaactcat tattcttgtg tacggcaacg tgatcaacag caagacggaa gaaacacatg
     3421 tcgcaccctg cattattccc aagtcgtgtg agcagatcca gggaatttca gatgtaagca
     3481 agcttcttgt aatcccgaca tctgagcctg tcaaaaaaga tgcgacctcc catgacgtgg
     3541 tcagcactgg tcttcgaacg accaagaaag actacagctg gaaaagaaaa gatgagtttg
     3601 aaggcggaca cctctttaga aagacatatt aacgagacag ctatgacgtg tggagtcagc
     3661 ttaactgtgc agaacttggg gaaacgccct acagtcttgg ttactgaaaa ctcagtgtgg
     3721 gaggagtctg cattctcacg atgcacagtc ctgtctgatg gaactttctg ctttactttt
     3781 caaagtcaaa taaaggtgga tgttatggtc aatgaa
//
