LOCUS       NM_001008762            3902 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus solute carrier family 9 member C1 (Slc9c1), mRNA.
ACCESSION   NM_001008762 XM_221463
VERSION     NM_001008762.2
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3902)
  AUTHORS   Wang,D., King,S.M., Quill,T.A., Doolittle,L.K. and Garbers,D.L.
  TITLE     A new sperm-specific Na+/H+ exchanger required for sperm motility
            and fertility
  JOURNAL   Nat Cell Biol 5 (12), 1117-1122 (2003)
   PUBMED   14634667
REFERENCE   2  (bases 1 to 3902)
  AUTHORS   Oduru,S., Campbell,J.L., Karri,S., Hendry,W.J., Khan,S.A. and
            Williams,S.C.
  TITLE     Gene discovery in the hamster: a comparative genomics approach for
            gene annotation by sequencing of hamster testis cDNAs
  JOURNAL   BMC Genomics 4 (1), 22 (2003)
   PUBMED   12783626
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000011.1.
            
            On Dec 23, 2009 this sequence version replaced NM_001008762.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence. The extent of this transcript is supported by
            orthologous data.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMEA5760383, SAMEA5760386
                              [ECO:0006172]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-118               JAXUCZ010000011.1  68740757-68740874   c
            119-372             JAXUCZ010000011.1  68738514-68738767   c
            373-473             JAXUCZ010000011.1  68737292-68737392   c
            474-602             JAXUCZ010000011.1  68735441-68735569   c
            603-768             JAXUCZ010000011.1  68734127-68734292   c
            769-894             JAXUCZ010000011.1  68731230-68731355   c
            895-1056            JAXUCZ010000011.1  68729739-68729900   c
            1057-1156           JAXUCZ010000011.1  68727024-68727123   c
            1157-1300           JAXUCZ010000011.1  68725462-68725605   c
            1301-1475           JAXUCZ010000011.1  68724252-68724426   c
            1476-1557           JAXUCZ010000011.1  68722851-68722932   c
            1558-1724           JAXUCZ010000011.1  68721131-68721297   c
            1725-1850           JAXUCZ010000011.1  68719387-68719512   c
            1851-1948           JAXUCZ010000011.1  68710052-68710149   c
            1949-2068           JAXUCZ010000011.1  68707948-68708067   c
            2069-2264           JAXUCZ010000011.1  68705164-68705359   c
            2265-2450           JAXUCZ010000011.1  68702161-68702346   c
            2451-2600           JAXUCZ010000011.1  68700108-68700257   c
            2601-2652           JAXUCZ010000011.1  68698708-68698759   c
            2653-2801           JAXUCZ010000011.1  68697254-68697402   c
            2802-2927           JAXUCZ010000011.1  68693952-68694077   c
            2928-3026           JAXUCZ010000011.1  68692683-68692781   c
            3027-3209           JAXUCZ010000011.1  68689006-68689188   c
            3210-3341           JAXUCZ010000011.1  68682499-68682630   c
            3342-3527           JAXUCZ010000011.1  68682196-68682381   c
            3528-3654           JAXUCZ010000011.1  68680194-68680320   c
            3655-3707           JAXUCZ010000011.1  68676184-68676236   c
            3708-3902           JAXUCZ010000011.1  68674385-68674579   c
FEATURES             Location/Qualifiers
     source          1..3902
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="11"
                     /map="11q21"
     gene            1..3902
                     /gene="Slc9c1"
                     /gene_synonym="Gm610; Slc9a10"
                     /note="solute carrier family 9 member C1"
                     /db_xref="GeneID:288117"
                     /db_xref="RGD:1309075"
     exon            1..118
                     /gene="Slc9c1"
                     /gene_synonym="Gm610; Slc9a10"
                     /inference="alignment:Splign:2.1.0"
     exon            119..372
                     /gene="Slc9c1"
                     /gene_synonym="Gm610; Slc9a10"
                     /inference="alignment:Splign:2.1.0"
     CDS             225..3770
                     /gene="Slc9c1"
                     /gene_synonym="Gm610; Slc9a10"
                     /note="sperm-specific sodium proton exchanger; solute
                     carrier family 9, member 10; solute carrier family 9,
                     subfamily C (Na+-transporting carboxylic acid
                     decarboxylase), member 1"
                     /codon_start=1
                     /product="sodium/hydrogen exchanger 10"
                     /protein_id="NP_001008762.2"
                     /db_xref="GeneID:288117"
                     /db_xref="RGD:1309075"
                     /translation="MEEVFENLTTTHNVKLSNAWLDLLKSVFLSTPQDLPEIILILSL
                     ICTIGAFLNMHLKDFPIPLPVILFLIGCCFEILSFASTQIQLYADAIQWMDPDMFFGI
                     FTPVIIFNVAFDMDIYMLQKLFWQILLITIPGFMINYTLILWYLQSVNKLSLKTIPWL
                     LFSAVLISSDPMLTSASIRDLGLSRSLTNLINGESLLTSVISLIIYSAVVQISFKSKH
                     MNHTLAHKVMSTAWSYLVESFITGILITKAIQLWMATIFGDDVNHITLIFSVLYLIFY
                     VCELIGMSGIFTLATIGLFLNSTSFKPGVEAFLLEFWNCLSFIGFLMVFTFIGLLIPA
                     HTYLYISFSDVYYSLNIYFTLIVLRLLVFLLMSPILSRLGHGFSWRWAFIMVWSEMKG
                     TPNINMALLLAYSDVSLGSERERSQILFHGVSVCVITLIVNRFILPMAVIKLGLRDVT
                     STKYKSVYYTFQHFQELTKSTAMALKFDKDLANADWNMVDKAIILQNPYALNQEETTE
                     HQKVKCPDCNKEIDETLNIEAMELANRRLLSAQIASYQRQYRNEILSQSAMQVLVGAA
                     GSFGEKKGEYMSPENIKNYSESKKLLSFLRKLLLNWVYNTKKDKGVPSRYMFLHACHS
                     IVFTNEFEYTGYIAVLMNTYPMIICWISRLKDIYQYEIKCANYYFLTFYILEALLKVA
                     AMRKEFFSHTWLLFELGITLVGILDIILIETDSISYKFDLTETVVFMNVVRLLRILRI
                     LKLITPKLLQVIDKRMSQQISFRYAILKGYVQGEMDVLNIIDQIASSKQAKQILLKRV
                     IRNMDHAMKELGYLEYDHPEIAVTMKTKEEVNVMLNMAREIVKAFRSKGIIHKVEGAE
                     INKLIMAKKKQVLELQSVIQPLNVEEAPYYIPWLSEDPEAISFIQEKAKVVTFDCGNN
                     IFEEGDEPEGIYVIISGMVKLKRSKPHLEMDRVSSESEVAQTRSYTLPHTEYLLSGEI
                     IGELNCLTKERMQYSATCKTVVETYFIPISHLYEGFEKKYPNMKYKMWQKIGLAITAQ
                     KIRENLSFEDWNYKMQLKLCNVFVRDIPKTTKTDIYDETVTHVVLIHGSAEDCQLRKI
                     YKAPFLIPVTCHQIQGLEEFTKVMIIQTSVAVRKFRWNVKKYNPPRRISMKPDSTESL
                     ETLNESSEDDEDKKENEENEEYLEDIIDISSVSKK"
     exon            373..473
                     /gene="Slc9c1"
                     /gene_synonym="Gm610; Slc9a10"
                     /inference="alignment:Splign:2.1.0"
     exon            474..602
                     /gene="Slc9c1"
                     /gene_synonym="Gm610; Slc9a10"
                     /inference="alignment:Splign:2.1.0"
     exon            603..768
                     /gene="Slc9c1"
                     /gene_synonym="Gm610; Slc9a10"
                     /inference="alignment:Splign:2.1.0"
     exon            769..894
                     /gene="Slc9c1"
                     /gene_synonym="Gm610; Slc9a10"
                     /inference="alignment:Splign:2.1.0"
     exon            895..1056
                     /gene="Slc9c1"
                     /gene_synonym="Gm610; Slc9a10"
                     /inference="alignment:Splign:2.1.0"
     exon            1057..1156
                     /gene="Slc9c1"
                     /gene_synonym="Gm610; Slc9a10"
                     /inference="alignment:Splign:2.1.0"
     exon            1157..1300
                     /gene="Slc9c1"
                     /gene_synonym="Gm610; Slc9a10"
                     /inference="alignment:Splign:2.1.0"
     exon            1301..1475
                     /gene="Slc9c1"
                     /gene_synonym="Gm610; Slc9a10"
                     /inference="alignment:Splign:2.1.0"
     exon            1476..1557
                     /gene="Slc9c1"
                     /gene_synonym="Gm610; Slc9a10"
                     /inference="alignment:Splign:2.1.0"
     exon            1558..1724
                     /gene="Slc9c1"
                     /gene_synonym="Gm610; Slc9a10"
                     /inference="alignment:Splign:2.1.0"
     exon            1725..1850
                     /gene="Slc9c1"
                     /gene_synonym="Gm610; Slc9a10"
                     /inference="alignment:Splign:2.1.0"
     exon            1851..1948
                     /gene="Slc9c1"
                     /gene_synonym="Gm610; Slc9a10"
                     /inference="alignment:Splign:2.1.0"
     exon            1949..2068
                     /gene="Slc9c1"
                     /gene_synonym="Gm610; Slc9a10"
                     /inference="alignment:Splign:2.1.0"
     exon            2069..2264
                     /gene="Slc9c1"
                     /gene_synonym="Gm610; Slc9a10"
                     /inference="alignment:Splign:2.1.0"
     exon            2265..2450
                     /gene="Slc9c1"
                     /gene_synonym="Gm610; Slc9a10"
                     /inference="alignment:Splign:2.1.0"
     exon            2451..2600
                     /gene="Slc9c1"
                     /gene_synonym="Gm610; Slc9a10"
                     /inference="alignment:Splign:2.1.0"
     exon            2601..2652
                     /gene="Slc9c1"
                     /gene_synonym="Gm610; Slc9a10"
                     /inference="alignment:Splign:2.1.0"
     exon            2653..2801
                     /gene="Slc9c1"
                     /gene_synonym="Gm610; Slc9a10"
                     /inference="alignment:Splign:2.1.0"
     exon            2802..2927
                     /gene="Slc9c1"
                     /gene_synonym="Gm610; Slc9a10"
                     /inference="alignment:Splign:2.1.0"
     exon            2928..3026
                     /gene="Slc9c1"
                     /gene_synonym="Gm610; Slc9a10"
                     /inference="alignment:Splign:2.1.0"
     exon            3027..3209
                     /gene="Slc9c1"
                     /gene_synonym="Gm610; Slc9a10"
                     /inference="alignment:Splign:2.1.0"
     exon            3210..3341
                     /gene="Slc9c1"
                     /gene_synonym="Gm610; Slc9a10"
                     /inference="alignment:Splign:2.1.0"
     exon            3342..3527
                     /gene="Slc9c1"
                     /gene_synonym="Gm610; Slc9a10"
                     /inference="alignment:Splign:2.1.0"
     exon            3528..3654
                     /gene="Slc9c1"
                     /gene_synonym="Gm610; Slc9a10"
                     /inference="alignment:Splign:2.1.0"
     exon            3655..3707
                     /gene="Slc9c1"
                     /gene_synonym="Gm610; Slc9a10"
                     /inference="alignment:Splign:2.1.0"
     exon            3708..3902
                     /gene="Slc9c1"
                     /gene_synonym="Gm610; Slc9a10"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gggcttggaa taagtaactg tcagtgaggt tgcagttggt tttggacagt tctggagtga
       61 gaggaagttc ctggcctcca cttctcacat tctctaggac actcctgtgc cctggatgaa
      121 gggcattagg aagacaccaa gaagaaaagt cctattccct ttgatcccct gtgagttttt
      181 cagagacaca gagtttgaga cgctgactgt aattaaatac gggaatggaa gaagtttttg
      241 agaatctaac tacaacccac aatgtcaaac tgagtaatgc atggctggat cttctcaaaa
      301 gcgtgttttt gagcactccc caggacctcc ctgaaatcat cttgatacta tctttgatct
      361 gtacgattgg agcatttttg aacatgcatc tgaaggattt tccaattcct cttcctgtga
      421 tactattttt aattggatgc tgttttgaaa ttctgagttt tgcatctact cagatccagt
      481 tatatgcaga tgccatacag tggatggatc ctgacatgtt ttttgggata tttacaccag
      541 taattatctt taatgttgca tttgacatgg atatatacat gcttcaaaag ttattttggc
      601 agatattatt aattacaatt cctggattta tgattaatta caccttaata ctgtggtatc
      661 tgcagtctgt gaataaatta tctttaaaga ccatcccctg gctactgttt tcagctgtgc
      721 ttatcagttc agatcctatg cttacttcag cctccataag agaccttggt ctttccagaa
      781 gcctcacaaa tttaattaac ggagagagtc tactgacctc agtgatatcc ttaattatat
      841 atagtgctgt tgtgcagatc agtttcaagt caaagcatat gaaccatacc ctagcccata
      901 aggtcatgtc cacagcttgg tcatatcttg tggaaagttt catcactgga atcctaatta
      961 caaaagcgat tcagttatgg atggctacca tctttggtga tgacgtcaac cacatcacgc
     1021 tcatcttctc agttctatac ctcatcttct atgtttgtga gctaattgga atgtctggaa
     1081 tatttactct ggccaccata ggactttttc taaattctac aagttttaaa ccaggagttg
     1141 aagcatttct cctcgaattc tggaactgcc tgtcctttat tggtttcctt atggtgttca
     1201 ctttcattgg acttctaatc cctgcacaca catatttata tatatcattt tctgatgtgt
     1261 attactcatt aaatatctac ttcacgctga ttgttttaag gcttctggtc tttctgctaa
     1321 tgagccccat tttgtctcga cttggtcacg ggttcagctg gcgctgggcg ttcatcatgg
     1381 tctggagtga aatgaaagga acaccgaaca taaatatggc ccttctgctt gcctactcgg
     1441 acgtttctct tggttccgag agggaaagat ctcaaatatt attccatggc gtgtcagtat
     1501 gtgtaatcac cctgattgtc aatagattta ttttgccaat ggcagtaatt aaactaggtc
     1561 ttcgtgatgt cacatcaaca aaatataaat cggtttatta tacattccag cactttcaag
     1621 agctaaccaa atccacagcc atggcactca aatttgacaa agatcttgct aacgctgact
     1681 ggaacatggt tgacaaggcg attatacttc aaaatccata tgctttaaac caagaagaaa
     1741 caacggaaca tcagaaggtg aaatgtcctg attgcaacaa ggaaatagat gagaccctta
     1801 acattgaagc catggagttg gccaacaggc gtctcctgtc agcgcaaata gcaagctacc
     1861 aacgacagta caggaatgag attctgtccc agagtgcaat gcaagtgttg gtaggcgcgg
     1921 ccggaagctt tggtgagaag aagggagaat atatgagtcc tgagaacata aagaattatt
     1981 cagaaagcaa aaaactcctc tcctttctta gaaaattact actcaactgg gtatataata
     2041 ctaaaaaaga taaaggggtt ccatcaagat acatgtttct tcatgcatgc catagcatag
     2101 tcttcacaaa tgaatttgaa tacactggat acatcgctgt attaatgaac acatatccga
     2161 tgataatctg ttggatttcc cgactaaaag acatctatca atatgagata aaatgtgcta
     2221 actactattt tcttacattt tatattctag aggctctact taaggtggca gcaatgagga
     2281 aggaattttt ttcacacacc tggctcctgt ttgagctcgg gattaccttg gtcggcatcc
     2341 tagatataat acttatcgaa acagactcca ttagttacaa atttgactta actgagactg
     2401 tggtcttcat gaacgtggtt cgactccttc gtatactgcg catcttgaag cttataacac
     2461 caaaattgct gcaagtaata gacaaaagga tgagccagca gatatccttc cggtatgcta
     2521 tactaaaagg ctacgtccaa ggggaaatgg atgtactgaa tataattgat cagattgcaa
     2581 gttccaaaca ggctaaacag atattgttaa agcgagtaat aaggaatatg gatcatgcta
     2641 tgaaagagct gggctaccta gagtatgatc acccagaaat cgctgtcact atgaaaacca
     2701 aggaggaggt taatgtgatg ctcaatatgg ccagagaaat tgtcaaggct ttcaggtcca
     2761 aaggaattat acataaggtg gaaggcgctg agatcaacaa gttaatcatg gccaaaaaga
     2821 aacaagtgct tgagctgcag tctgttatcc agccacttaa tgttgaagaa gccccatact
     2881 atatcccatg gctcagtgaa gatcctgaag ccataagctt tattcaggaa aaagcaaaag
     2941 ttgtgacatt tgactgcgga aataacatat ttgaggaagg cgacgaacca gaaggaatct
     3001 atgtaataat ttcgggcatg gtaaagctta aaaggtcaaa gccacacctg gagatggata
     3061 gagtgtcctc agagtcagag gttgctcaga ctagaagtta tacactgcct cacacagaat
     3121 atctgctcag cggggaaata ataggagagt taaactgttt gactaaagaa cggatgcaat
     3181 attctgccac ctgcaaaact gttgtggaga cgtattttat tcccattagc cacttgtatg
     3241 aaggctttga aaaaaaatac cctaacatga aatataaaat gtggcaaaaa atcggacttg
     3301 ccattactgc ccaaaagatc cgggaaaact tatcttttga ggactggaac tacaagatgc
     3361 agttgaaact ctgcaatgtc ttcgtaaggg acatacccaa gaccacaaaa actgacatct
     3421 atgatgaaac ggtaacccat gttgtcctca tccatggatc tgcagaagac tgccagttgc
     3481 gaaaaattta taaggcacct ttcctaattc ccgtgacatg ccatcagata caaggcttag
     3541 aagagttcac aaaagtcatg attattcaaa cttccgttgc tgtgagaaaa ttcaggtgga
     3601 atgtaaaaaa gtacaaccca cctcgaagga tttcaatgaa accagattct acagaatcac
     3661 ttgaaacatt aaatgaaagt tctgaagatg atgaggataa aaaagagaat gaagaaaatg
     3721 aggaatattt ggaagatatt attgacatct caagtgtctc caagaaataa cctggaaaga
     3781 aagtttagtc agtcgcctga gcttctcacc atggcaatga aaacatatat ttatggagat
     3841 agagacaagc caaagtttat atgcctcttg tgtgataatg tgaattaaag taccttgcac
     3901 ta
//
