LOCUS       NM_001107078            2295 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus solute carrier family 7, member 4 (Slc7a4), mRNA.
ACCESSION   NM_001107078 XM_001063615 XM_221263
VERSION     NM_001107078.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2295)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 2295)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC169079.1.
            
            On Sep 4, 2008 this sequence version replaced NM_001107078.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC169079.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132262, SAMD00132264
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2295
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="11"
                     /map="11q23"
     gene            1..2295
                     /gene="Slc7a4"
                     /note="solute carrier family 7, member 4"
                     /db_xref="GeneID:303787"
                     /db_xref="RGD:1305905"
     exon            1..17
                     /gene="Slc7a4"
                     /inference="alignment:Splign:2.1.0"
     exon            18..1031
                     /gene="Slc7a4"
                     /inference="alignment:Splign:2.1.0"
     CDS             50..1957
                     /gene="Slc7a4"
                     /note="solute carrier family 7 (cationic amino acid
                     transporter, y+ system), member 4; solute carrier family 7
                     (orphan transporter), member 4"
                     /codon_start=1
                     /product="cationic amino acid transporter 4"
                     /protein_id="NP_001100548.1"
                     /db_xref="GeneID:303787"
                     /db_xref="RGD:1305905"
                     /translation="MARGLPSTARLARFCQKLNRLKPLEESSTETSLRRCLSTLDLTL
                     LGVGGMVGSGLYVLTGTVAKDMAGPAVLLSFLVAAVASLLAALCYAEFGARVPRTGSA
                     YLFTYVSMGEIWAFLIGWNVLLEYLIGGAAVARAWSGYLDAIFNHSIRNFTESHMGVW
                     QMPFLAHYPDFLAAGILLVASAFVSCGARVSSWLNHTFSAISLIVILFIIVLGFILAR
                     PHNWSAEEGGFAPFGFSGILAGTATCFYAFVGFDVIAASSEEAKNPRWAVPMAIAISL
                     GLAAGAYILVSTVLTLMVPWHSLDPDSALADAFYRRGYGWAGFIVAVGSICAMNTVLL
                     SNLFSLPRIVYAMAADGLFFQVFARVHPRTQVPVVGILVFGVLMALLALLMDLEALVQ
                     FLSIGTLLAYTFVATSIIVLRFQKASPPSSPCPASPGPTVKKYDSFSDHIQLVDAVQA
                     SMSEPGQLRPALKPFLGFLDGLSPGTAVTWALGILIASAISLACVLVFGNSALHLPRW
                     GYVLLLVVSGAVFLSSLLVLGAHQQQKKQDTFQIPLVPLTPALSILLNLCLMLKLSYL
                     TWLRFIFWLLVGLVVYFGYGIWHSKENQREPLELTTAHYVVFPSGSLEETVQAVQPDS
                     QTPVQGPGCTE"
     exon            1032..1672
                     /gene="Slc7a4"
                     /inference="alignment:Splign:2.1.0"
     exon            1673..1781
                     /gene="Slc7a4"
                     /inference="alignment:Splign:2.1.0"
     exon            1782..2272
                     /gene="Slc7a4"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agcgacggcg acagcaggtt cctgaggctg gctcagtact ctgtctgcca tggcccgggg
       61 actgcccagc actgcccgct tggcacgctt ttgccagaaa ctgaaccgtc tgaagccact
      121 ggaagagtct agcacagaga catcactgcg gcgttgcctg tccacactgg acttgaccct
      181 actgggtgtg ggtggcatgg tgggatctgg gctctatgta ctcacaggca cagtggctaa
      241 ggacatggct ggccctgctg tgctcttgtc ctttttggtg gccgctgtag cctccctgct
      301 ggcagcacta tgctatgcag agtttggagc ccgcgtgccc cgtactggct ctgcatacct
      361 attcacctac gtgtccatgg gggaaatatg ggcatttctc ataggctgga atgtgcttct
      421 ggaatacctc attggaggtg ctgctgtggc ccgtgcctgg agtggctatt tggatgccat
      481 ctttaaccac agcattcgca acttcacaga atctcacatg ggtgtctggc agatgccctt
      541 cctagcccac tatccagatt ttctggctgc tggcattttg cttgtggctt ctgcctttgt
      601 ctcctgtggc gcccgagtct cctcctggct caaccacaca ttctcagcca tcagtctgat
      661 tgtgatcctc ttcatcatcg tcctgggttt catcctggcc cgtcctcaca attggagtgc
      721 agaagaaggt ggctttgcac ccttcggctt ctctggcatc ctcgctggca cagccacctg
      781 tttctatgcc tttgtgggct tcgatgtcat tgccgcctcc agtgaggagg ccaaaaaccc
      841 acggtgggcc gtgcccatgg ccattgccat ctcgcttggc ctggcagctg gtgcctatat
      901 tctggtctcc actgtgctga ccctcatggt gccttggcat agcctggacc ctgactcggc
      961 acttgctgat gccttctaca ggcggggcta cggctgggct ggcttcattg tggcagttgg
     1021 ttctatctgt gccatgaaca cggtcctgct cagcaacctc ttctccctgc cgcgcattgt
     1081 ctacgccatg gctgccgacg ggctcttctt ccaggtgttc gcccgtgtac acccccggac
     1141 acaggtgcct gtggtgggaa tcctggtgtt tggggtcctt atggctctcc tggcactgct
     1201 gatggacctc gaggcactgg tccagttcct atccatcggc accctgctgg cctatacctt
     1261 tgtcgccacc agcatcattg tgctgcgttt ccagaaagct tccccaccca gttccccttg
     1321 cccagccagc cccggcccca cagttaagaa gtacgactcc ttctcggacc atatacagct
     1381 agtagatgct gtacaggctt cgatgtctga gcctgggcag ctgcgaccag ccctgaagcc
     1441 cttcctgggc ttcctggatg gactcagccc tggaactgct gtgacctggg cgctgggcat
     1501 cttgatagcc tcagctattt ccctggcgtg tgtgctagtc ttcgggaact cagccctgca
     1561 cctcccacgg tggggctatg tcttgctgct ggtcgtcagt ggtgctgtct ttctgtccag
     1621 cctcctggtc ctgggggctc accagcagca aaagaaacaa gacactttcc agatcccttt
     1681 ggtgcccctg actccagccc tgagcatcct cctcaacctt tgcctcatgc tgaagctcag
     1741 ctacctgacc tggctgcgtt ttatcttctg gctgctggtc ggactcgtcg tgtattttgg
     1801 ctacggcatc tggcacagca aggagaacca gagggagcca ttggagctga ctactgcaca
     1861 ctacgtggta ttccccagcg gcagcctgga ggaaaccgtg caagctgtgc agcctgatag
     1921 ccagacacca gtccagggac caggctgtac cgagtagctg gccatggagt ctggctcatg
     1981 gaggcccccc acaaccctaa catccagagg ctgaaagaat tggcagctgc ctactcaagg
     2041 aagcttgggt ctgaagcctg cccagactgg gctgggagtg ttctcagagc ctaaacacag
     2101 gaactgagtc ttcagctatc aataggccat ggctagagct ggggcgcact cttcgtccgc
     2161 tgccttcctg tttatgatta actctggata cctgggcagg tggggcagag tgagcaggga
     2221 agcggcttca gcccctgaga cgcagaataa taactaatca gctagtttgt gaaaaaaaaa
     2281 aaaaaaaaaa aaaaa
//
