LOCUS       XM_039094065            3476 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus solute carrier family 6, member 16
            (Slc6a16), transcript variant X1, mRNA.
ACCESSION   XM_039094065
VERSION     XM_039094065.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039094065.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3476
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3476
                     /gene="Slc6a16"
                     /note="solute carrier family 6, member 16; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:292902"
                     /db_xref="RGD:1561338"
     CDS             671..3223
                     /gene="Slc6a16"
                     /codon_start=1
                     /product="orphan sodium- and chloride-dependent
                     neurotransmitter transporter NTT5 isoform X1"
                     /protein_id="XP_038949993.1"
                     /db_xref="GeneID:292902"
                     /db_xref="RGD:1561338"
                     /translation="MPHQLSFQSPHASGPLCPSKCLSLSLRVGLWPSFLADSSARLPF
                     SLSLPKTLDLQAWGNKNCTPYPLCCGTFEKPTKVKVSGPQRTRPKVAPDMRSSKESED
                     AFFLAKSRASASDRPEESSLVKTSGSSLDKNVSIETTKLSEMDSNLLVWEDGTLATWS
                     TSAWIAQAQVSESRVAKAQAWETLALEAQARGALQFNKPSTTEYSMETTPKQESPIEL
                     NKTSKENSNVFPPWLLWSSKAEYILALMGYLVMPSGLLRFVTCWVHKGSWSFFIAYLL
                     MLFGLGIPLLFLEMAVGQRAQQSSIDLWKTLSPWFGGLGYSMVMVCLITNTYLNVFNS
                     WILFYMSHIFHFVVPWDRCPLQKNSSDFDPECEQATSYTYFWYRQTLKASDSIEDGGQ
                     PSFNLAMFLFLAWCLICVFMVNGIKSLGKVLCVLLQVPYFIIICFLVRTLSMGNGIGY
                     GLNYLLILEVARISDLTMWCQAGIQVLFDIGLGFGPVISLSSHMSDFNNCLKDAFLMG
                     LFKIVTLLITTPFFLSILGFWATITTHHCCKKNTNKLLMLIAQGILPPEVEPPDLNDD
                     PISIYNSWLNSLPPPLRSAVLSMVPECNIQKQFMRIEDSPRFLFLIFTEVISLLPGSA
                     FWTVLFFLALLGLGLCTNLMYMLGNILTLQDTFPFCRRQPRLLTVGVSMTTFLCGLIF
                     IQPSGIYYFSLLSEYWVAVPIITIILCETLAVAWAYGAKRFLADMMALLSRPIFPGCS
                     WLWRYVSPVVLLGLLLFICIYLVQGPLVYMAWDSSTSKEVVRYFPMWSLMLIAGLSAV
                     VLMPIPAYFAYCLNLGIPFRSAPSCKLPLGSGQLLTTKEASKDILQGYKPES"
ORIGIN      
        1 cccagtcaca cccccccccc catggccttc accccaggag cctaactttg ccattcaggt
       61 ttctttctga gtgactctct tcctcacaat ctcaaaagtg tttctaaggg tctttaggtc
      121 tccattgcat cttcttttta aaaattatta tttaaaaata aatttaaaat taattttctg
      181 tagcttacat tggtccagca ctcctgatct tcccgtttct atcttggatg ctgggattac
      241 aagtaccaag tggggattga accaacaaac acttggccag ctgaatgaat gctactaagt
      301 ggaagttagt ttgtgtctga ctctgccctc ccctctctct ccagggtctc tctatataag
      361 ctcagctgtc ctgggattta ttgtatagac caagctggcc tcacagagat ctgcctggct
      421 cttcggtcag agtactggaa ttaagggggt gtaccatcac acatggtctc ttcttttatt
      481 tatttattta tttatttatt tttttcggag ctggggaccg aacccagggc cttgcgcttg
      541 ctaggcaagc tctctaccac tgagctaaat ccccaacccc ttcttttttt ttaatagatg
      601 tggcttcctt ggtctctaac gctcacatga ttctctacct cagtctgtga gtagggagga
      661 gctacaagca atgccacacc agctttcctt tcaatctcca catgcctctg gacctctgtg
      721 tccatccaaa tgtctttctc tgtctctgcg tgttggtcta tggcccagct tcctggctga
      781 cagcagtgcc cgcctgcctt tctctctctc tctgcccaag acccttgacc tccaagcctg
      841 gggtaataaa aactgcactc cttacccgct gtgctgtgga acatttgaaa aaccaacaaa
      901 ggtcaaagtg tcgggaccac agcggacaag gccaaaagtg gccccagaca tgaggtcctc
      961 taaggaaagt gaagatgcat ttttccttgc caaatcgaga gcttccgcat cagataggcc
     1021 tgaggagtct tccttggtaa agacttcagg ctcctccctg gacaaaaatg tatccattga
     1081 gacaacaaag ctttctgaga tggattcaaa ccttttggta tgggaagatg ggaccctagc
     1141 gacctggtct acatcagcct ggattgcaca ggctcaagtt tcagagagcc gggtggcaaa
     1201 ggctcaggcc tgggagaccc ttgctttgga ggctcaggca agaggggcct tacaattcaa
     1261 caagcccagc accacagagt actcaatgga gacaaccccg aaacaagaat cccccataga
     1321 gttgaacaag acgagtaagg aaaatagcaa cgtcttccct ccctggctcc tctggtccag
     1381 caaggctgag tacatcctgg ccctcatggg ctacttggtg atgccatctg gactcttgcg
     1441 ctttgtcaca tgctgggttc acaaaggaag ctggagcttc ttcattgcgt acctcctaat
     1501 gctgttcggc cttgggattc ctctcctctt cctggagatg gcggttggtc agagggcaca
     1561 gcagagcagc attgacctgt ggaagaccct gagcccctgg tttggtggac taggatacag
     1621 catggttatg gtgtgcctca tcactaacac ctacctgaac gtgttcaatt cctggatcct
     1681 cttctacatg agccacatat tccacttcgt tgtcccatgg gaccggtgtc ccttacaaaa
     1741 gaattccagc gactttgatc ctgaatgtga acaggcaaca tcctacacgt acttttggta
     1801 ccggcagacc ttgaaggcct cagacagtat tgaggatgga ggacagccgt ccttcaacct
     1861 ggccatgttc ctctttctgg cctggtgcct catttgtgtc ttcatggtca acgggatcaa
     1921 gtcccttggg aaggtcctgt gtgtcttgtt gcaagttccc tatttcatca tcatctgctt
     1981 cctcgtccgg actctgtcaa tgggcaatgg cataggatat ggccttaact acctgctgat
     2041 cctggaggtg gcgagaatct ccgacttaac tatgtggtgc caagcaggga tccaggtctt
     2101 gtttgacatt ggcctgggct ttggccccgt tatctcttta tcctcacaca tgtctgactt
     2161 caacaactgt ctgaaggatg ccttccttat gggtctgttc aagatagtca ccttgttgat
     2221 caccacaccc ttcttcctct ccatcctggg cttctgggcc actataacca cacatcactg
     2281 ctgtaagaag aacacaaata aactcctaat gctgatagcc caggggatcc tgcctcctga
     2341 ggtggagccc cctgacctga atgacgaccc catctccatc tacaattcct ggctcaacag
     2401 cctcccgcca cccttgagga gcgccgttct cagcatggtg cccgaatgca acatccagaa
     2461 gcagtttatg aggattgagg atagccctcg cttcctgttc ctgatcttca ctgaggtcat
     2521 ctcactatta cccgggtctg ccttctggac tgtcctcttc tttctggcgc tgctgggtct
     2581 ggggttgtgt accaacctca tgtacatgct gggcaacatt ttgacactcc aggacacctt
     2641 ccccttctgc aggagacagc caaggttgct cacagtgggt gtttccatga cgacgttcct
     2701 gtgtggcctc atcttcatcc aaccttcagg catctactac ttttcactgc tgagtgaata
     2761 ctgggtagca gtgcccatca tcaccatcat cctatgcgaa acccttgccg tagcctgggc
     2821 ctatggggcc aagaggttcc ttgcagacat gatggctctg ctgagccgcc ccattttccc
     2881 tggctgcagc tggctgtggc gctatgtgtc tccagtggtg ctgctaggcc tgttactgtt
     2941 catctgcatt taccttgtcc aggggcccct cgtctacatg gcctgggact caagcacttc
     3001 aaaagaagtg gtccgctatt tcccaatgtg gtccttgatg ctgattgctg ggctgtctgc
     3061 cgttgtcctc atgcccatcc ctgcatactt tgcctactgc ctcaacctgg ggattccctt
     3121 caggtctgcg ccctcctgta agctaccact cggaagtggc cagctattga ctacaaaaga
     3181 ggcctcaaag gatattctac aaggctacaa accagagtcc taatgagcct gtcagcagag
     3241 cccccacttc cctcgtcagg ccagacatct tgcatctctc acagcagacc agagaggcag
     3301 ctctgaacat cagcttaaag ctggcagcag cccaggtgcc caggacagag gagcggtggg
     3361 gcctgctggc tctggagcac gttcctggct gggttcttcc actgccatgc agtgcctccc
     3421 caggtcctgg ctcagagcat gcgagcattc agtgcaccca ggcttggcct gccagc
//
