LOCUS       NM_001398666            1965 bp    mRNA    linear   ROD 29-MAR-2024
DEFINITION  Rattus norvegicus solute carrier family 66 member 2 (Slc66a2),
            transcript variant 2, mRNA.
ACCESSION   NM_001398666 XM_006254956
VERSION     NM_001398666.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1965)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 1965)
  AUTHORS   Gerhard,D.S., Wagner,L., Feingold,E.A., Shenmen,C.M., Grouse,L.H.,
            Schuler,G., Klein,S.L., Old,S., Rasooly,R., Good,P., Guyer,M.,
            Peck,A.M., Derge,J.G., Lipman,D., Collins,F.S., Jang,W., Sherry,S.,
            Feolo,M., Misquitta,L., Lee,E., Rotmistrovsky,K., Greenhut,S.F.,
            Schaefer,C.F., Buetow,K., Bonner,T.I., Haussler,D., Kent,J.,
            Kiekhaus,M., Furey,T., Brent,M., Prange,C., Schreiber,K.,
            Shapiro,N., Bhat,N.K., Hopkins,R.F., Hsie,F., Driscoll,T.,
            Soares,M.B., Casavant,T.L., Scheetz,T.E., Brown-stein,M.J.,
            Usdin,T.B., Toshiyuki,S., Carninci,P., Piao,Y., Dudekula,D.B.,
            Ko,M.S., Kawakami,K., Suzuki,Y., Sugano,S., Gruber,C.E.,
            Smith,M.R., Simmons,B., Moore,T., Waterman,R., Johnson,S.L.,
            Ruan,Y., Wei,C.L., Mathavan,S., Gunaratne,P.H., Wu,J., Garcia,A.M.,
            Hulyk,S.W., Fuh,E., Yuan,Y., Sneed,A., Kowis,C., Hodgson,A.,
            Muzny,D.M., McPherson,J., Gibbs,R.A., Fahey,J., Helton,E.,
            Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M.,
            Madari,A., Young,A.C., Wetherby,K.D., Granite,S.J., Kwong,P.N.,
            Brinkley,C.P., Pearson,R.L., Bouffard,G.G., Blakesly,R.W.,
            Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J.,
            Myers,R.M., Butterfield,Y.S., Griffith,M., Griffith,O.L.,
            Krzywinski,M.I., Liao,N., Morin,R., Palmquist,D., Petrescu,A.S.,
            Skalska,U., Smailus,D.E., Stott,J.M., Schnerch,A., Schein,J.E.,
            Jones,S.J., Holt,R.A., Baross,A., Marra,M.A., Clifton,S.,
            Makowski,K.A., Bosak,S. and Malek,J.
  CONSRTM   MGC Project Team
  TITLE     The status, quality, and expansion of the NIH full-length cDNA
            project: the Mammalian Gene Collection (MGC)
  JOURNAL   Genome Res 14 (10B), 2121-2127 (2004)
   PUBMED   15489334
  REMARK    Erratum:[Genome Res. 2006 Jun;16(6):804. Morrin, Ryan [corrected to
            Morin, Ryan]]
REFERENCE   3  (bases 1 to 1965)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000018.1.
            
            On Dec 21, 2021 this sequence version replaced XM_006254956.4.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360176.2398233.1,
                                           SRR26360172.2745215.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760400, SAMEA5760433
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-148               JAXUCZ010000018.1  75977458-75977605
            149-485             JAXUCZ010000018.1  75978961-75979297
            486-619             JAXUCZ010000018.1  75985341-75985474
            620-836             JAXUCZ010000018.1  76005130-76005346
            837-1965            JAXUCZ010000018.1  76013523-76014651
FEATURES             Location/Qualifiers
     source          1..1965
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="18"
                     /map="18q12.3"
     gene            1..1965
                     /gene="Slc66a2"
                     /gene_synonym="Pqlc1"
                     /note="solute carrier family 66 member 2"
                     /db_xref="GeneID:361352"
                     /db_xref="RGD:1305223"
     exon            1..148
                     /gene="Slc66a2"
                     /gene_synonym="Pqlc1"
                     /inference="alignment:Splign:2.1.0"
     exon            149..485
                     /gene="Slc66a2"
                     /gene_synonym="Pqlc1"
                     /inference="alignment:Splign:2.1.0"
     CDS             283..1044
                     /gene="Slc66a2"
                     /gene_synonym="Pqlc1"
                     /note="PQ-loop repeat-containing protein 1; PQ loop repeat
                     containing 1"
                     /codon_start=1
                     /product="solute carrier family 66 member 2"
                     /protein_id="NP_001385595.1"
                     /db_xref="GeneID:361352"
                     /db_xref="RGD:1305223"
                     /translation="MEAEGLGWLLVPLHQLVSWVAAGAMVFGGVVPYIPQYRDIRRTQ
                     NADGFSTHVCLVLLVANILRILFWFGRHFESPLLWQSIVMILTMLLMLKLCTEVRVAN
                     ELNVKRRSFADFDPHHFWHWSSFADYVQCVLAFTGVAGYITYLSIDSALFVETLGFLA
                     VLTEAMLGVPQLYRNYRHRSTEGMSLKMVLMWTSGDTFKTAYFLLNGAPLQFSVCGLL
                     QVMVDLAILGQAYAFAHHPQKPAPHAVHPASAKAL"
     exon            486..619
                     /gene="Slc66a2"
                     /gene_synonym="Pqlc1"
                     /inference="alignment:Splign:2.1.0"
     exon            620..836
                     /gene="Slc66a2"
                     /gene_synonym="Pqlc1"
                     /inference="alignment:Splign:2.1.0"
     exon            837..1965
                     /gene="Slc66a2"
                     /gene_synonym="Pqlc1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 attcatcttc ctgttccttc ctggagttga gcattgggtg tgttgattca ggaagtggct
       61 aggggggctg cgggctccgc tggaggataa gtacttcctg tcttttccag gcccctggaa
      121 aaccaagctc gtttggaatt catcttaagt ccggatggtg gctgactgcg caggatagcg
      181 gcagccatgt ggaggtgaca gtcagcttgc ggactcagag agcccaaagg aggttggccc
      241 aggtggacat cgctggctgg cagcgcggcc tcggtgctgg cgatggaagc ggaaggcttg
      301 ggttggcttc tggtcccgtt gcaccagctg gtttcctggg tggccgctgg ggccatggtc
      361 ttcggagggg tggtgccgta cataccccag tacagggaca tccggaggac tcagaacgct
      421 gacggttttt ccacccacgt gtgcctggtg ctattggtgg ccaatatctt acggatactc
      481 ttctggtttg gcaggcactt cgagtcgccg ctcctgtggc aaagcatagt catgatcctt
      541 acgatgctac tgatgctgaa gctgtgcacc gaggtccgcg tggccaacga gctgaacgtc
      601 aagcgccgct ccttcgcaga cttcgaccct catcatttct ggcattggag cagcttcgca
      661 gactatgtgc agtgtgttct ggccttcaca ggtgtggccg gctacatcac ctacctgtcc
      721 atcgactcgg ctctgtttgt ggagacgttg ggcttcctgg cagtgctgac ggaagccatg
      781 ctgggtgtgc cgcagctgta tcggaactat cgtcaccgct ccacggaggg catgagcctc
      841 aagatggtgc tcatgtggac aagtggggac accttcaaga cagcctactt cttgctcaac
      901 ggcgcacctc tgcagttctc cgtctgtggt ctactacagg tcatggtgga cctggccatc
      961 ctggggcagg cctatgcctt tgctcaccac ccccagaagc cagcacccca tgcagtgcat
     1021 cctgccagtg ccaaggcgct ctgaggaatc tagggcggac gaggacatgc gcgactgacc
     1081 aaccgtgggt gctgagtccc gatccgtgct tctgcaccag ggagcttggc cctgtgtacc
     1141 ccacaggtgg gccaggcgta ggcagagatt aagttgagcg ctgcgtcccc ctcagccttc
     1201 aggtggggga ctcagggtca gtggagctag ggctggctct gtggtgtttt caagatgata
     1261 gaaaaggcag attgtctttc cttacctcct ccagaaaaac actggcccga tcctgaaata
     1321 ggttcatgcc actgagcaag atggcaggca cagcaggcag tggagttcct tcctctcagc
     1381 cagcttccct cagtgagcct ctgctctccc agcagagcct gtggcactct ggacagtgtg
     1441 tagtcatggc tgcgggtggc ttgtctgtcc tcaagttctg ccctgtcctg cccttgtatg
     1501 ccacgggtat gtgtacagca cctggggtgg atggaagccg ctggcccgac acgggtcaca
     1561 ctgtatttgg cttcctctct gagctcatca tgagattgtg ttacgctcgg cagccttgtg
     1621 ctgacctggc tggctcctgg gtccagaatg ttctagatgc ttctgtataa cagtaccgtc
     1681 ccttctgctg ggcagaagaa tttctcctgc acacgatgat gccatctact tagcacaaca
     1741 gctctgatgg tcacggtggc tcaccagatg gccaaagagt ccgcactgtg ccacctccaa
     1801 gcttcccccg gatattctaa gtgtgtgagc gagattcttg cttactctct ggcctgtaag
     1861 atgcttgtaa gatgtttatt tttaaaaaac cgaagggaga tgtcggtagt gctaattacc
     1921 tccaaaataa atgccaccga tggcagccct agctgctgaa atgaa
//
