LOCUS       NM_152938               3163 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus solute carrier family 4 member 9 (Slc4a9), mRNA.
ACCESSION   NM_152938
VERSION     NM_152938.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3163)
  AUTHORS   Stehberger,P.A., Shmukler,B.E., Stuart-Tilley,A.K., Peters,L.L.,
            Alper,S.L. and Wagner,C.A.
  TITLE     Distal renal tubular acidosis in mice lacking the AE1 (band3)
            Cl-/HCO3- exchanger (slc4a1)
  JOURNAL   J Am Soc Nephrol 18 (5), 1408-1418 (2007)
   PUBMED   17409310
REFERENCE   2  (bases 1 to 3163)
  AUTHORS   Praetorius,J., Nejsum,L.N. and Nielsen,S.
  TITLE     A SCL4A10 gene product maps selectively to the basolateral plasma
            membrane of choroid plexus epithelial cells
  JOURNAL   Am J Physiol Cell Physiol 286 (3), C601-C610 (2004)
   PUBMED   14592810
REFERENCE   3  (bases 1 to 3163)
  AUTHORS   Ko,S.B., Luo,X., Hager,H., Rojek,A., Choi,J.Y., Licht,C.,
            Suzuki,M., Muallem,S., Nielsen,S. and Ishibashi,K.
  TITLE     AE4 is a DIDS-sensitive Cl(-)/HCO(-)(3) exchanger in the
            basolateral membrane of the renal CCD and the SMG duct
  JOURNAL   Am J Physiol Cell Physiol 283 (4), C1206-C1218 (2002)
   PUBMED   12225984
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000018.1.
            
            On Nov 27, 2020 this sequence version replaced NM_152938.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AB024339.1, SRR26643287.34787.1
                                           [ECO:0000332]
            RNAseq introns              :: partial sample support SAMN06680435,
                                           SAMN13663600 [ECO:0000350]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-252               JAXUCZ010000018.1  28402793-28403044
            253-413             JAXUCZ010000018.1  28403329-28403489
            414-527             JAXUCZ010000018.1  28403840-28403953
            528-577             JAXUCZ010000018.1  28404293-28404342
            578-735             JAXUCZ010000018.1  28404476-28404633
            736-823             JAXUCZ010000018.1  28404902-28404989
            824-978             JAXUCZ010000018.1  28405268-28405422
            979-1095            JAXUCZ010000018.1  28405650-28405766
            1096-1270           JAXUCZ010000018.1  28405919-28406093
            1271-1404           JAXUCZ010000018.1  28406235-28406368
            1405-1667           JAXUCZ010000018.1  28406588-28406850
            1668-1726           JAXUCZ010000018.1  28407781-28407839
            1727-1915           JAXUCZ010000018.1  28408062-28408250
            1916-2029           JAXUCZ010000018.1  28408373-28408486
            2030-2191           JAXUCZ010000018.1  28409695-28409856
            2192-2370           JAXUCZ010000018.1  28409940-28410118
            2371-2443           JAXUCZ010000018.1  28411083-28411155
            2444-2512           JAXUCZ010000018.1  28413573-28413641
            2513-2686           JAXUCZ010000018.1  28413869-28414042
            2687-2842           JAXUCZ010000018.1  28414952-28415107
            2843-2936           JAXUCZ010000018.1  28415478-28415571
            2937-3163           JAXUCZ010000018.1  28418379-28418605
FEATURES             Location/Qualifiers
     source          1..3163
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="18"
                     /map="18p11"
     gene            1..3163
                     /gene="Slc4a9"
                     /gene_synonym="Ae4"
                     /note="solute carrier family 4 member 9"
                     /db_xref="GeneID:266612"
                     /db_xref="RGD:628811"
     exon            1..252
                     /gene="Slc4a9"
                     /gene_synonym="Ae4"
                     /inference="alignment:Splign:2.1.0"
     CDS             35..2896
                     /gene="Slc4a9"
                     /gene_synonym="Ae4"
                     /note="AE 4; anion exchanger 4; solute carrier family 4,
                     sodium bicarbonate cotransporter, member 9"
                     /codon_start=1
                     /product="anion exchange protein 4"
                     /protein_id="NP_690921.2"
                     /db_xref="GeneID:266612"
                     /db_xref="RGD:628811"
                     /translation="MKLPGQEDFEGSDAHENVCSEQLDGDLGPGSGLDGPSDIDNGKA
                     QGCKDPLLFIQLNELLGWPQALEWRETGRWLLFEEKLDIGAGRWSAPHVPTLALPSLQ
                     KLRGLLAEGIVLLDCPARSLLELVEQVVSGESLSPELRGQLQALLLQRPQHHIQTTGI
                     RPCRGSNAFRKASRDEDTLLKHQNPLRQKLPPGAEAAAVLAGELGFLEQPLAAFVRLQ
                     NPVVLEPLTEVVLPSRFFCLLLGPPTLGRSYHETGRAAAVLLSDPQFQWSVRRASNLH
                     DLLAALDAFLQEVTALPPGRWDRTARIPPPKCLPSQHKRFPSKLQEVTSLSRQSAALA
                     ENKHHHGPHTPIPELQRTGRLFGGLVQDVRRKACWYPSDFLDALHPQCFSAVLYIYLA
                     TVTNAITFGGLLGDATEGAQGVLESFLGTAVAGATFCLMAGQPLTILSSTGPVLVFER
                     LLFSFSRDYSLDYLPFRLWVGIWVATFCLALVATEASLLVRYFTRFTEEGFCALISLI
                     FIYDAVGKMLNLIRAYPIQRPGSPAYSCFCQYPGTGGNASEFDSTMFKDTEDVLNVHP
                     GLVNASFLPPSECIRQGGYPRGPSCHTVPDIAFFSLLLFFTSFLCAIALKHVKNSRLF
                     PSVVRKVFSDFSSVLAILLGCGLDAFLGLATPKLLVPTEFKPTLPGRGWLVSPFGANP
                     WWLSVAAALPALLLSILIFMDQQITAVILNRAEYRLQKGAGFHLDLFCVAVLMLFTSA
                     LGLPWYVSATVISLAHMDSLRRESKACVPGEDPNFLGIREQRLTGLVVFILTGVSIFL
                     APVLKFIPMPVLYGIFLYMGVAALSSMQFMKRVQLLLMPRKHQPDVLLLRHVPLIRVH
                     LFTAIQLACLGLLWVIKSTPAAIVFPLMLLGLVAVRKALEWIFSPQELLWLDELMPEE
                     EKTIPENRPEPEHLFSGNDSENSELMYQPKAPEINISVN"
     exon            253..413
                     /gene="Slc4a9"
                     /gene_synonym="Ae4"
                     /inference="alignment:Splign:2.1.0"
     exon            414..527
                     /gene="Slc4a9"
                     /gene_synonym="Ae4"
                     /inference="alignment:Splign:2.1.0"
     exon            528..577
                     /gene="Slc4a9"
                     /gene_synonym="Ae4"
                     /inference="alignment:Splign:2.1.0"
     exon            578..735
                     /gene="Slc4a9"
                     /gene_synonym="Ae4"
                     /inference="alignment:Splign:2.1.0"
     exon            736..823
                     /gene="Slc4a9"
                     /gene_synonym="Ae4"
                     /inference="alignment:Splign:2.1.0"
     exon            824..978
                     /gene="Slc4a9"
                     /gene_synonym="Ae4"
                     /inference="alignment:Splign:2.1.0"
     exon            979..1095
                     /gene="Slc4a9"
                     /gene_synonym="Ae4"
                     /inference="alignment:Splign:2.1.0"
     exon            1096..1270
                     /gene="Slc4a9"
                     /gene_synonym="Ae4"
                     /inference="alignment:Splign:2.1.0"
     exon            1271..1404
                     /gene="Slc4a9"
                     /gene_synonym="Ae4"
                     /inference="alignment:Splign:2.1.0"
     exon            1405..1667
                     /gene="Slc4a9"
                     /gene_synonym="Ae4"
                     /inference="alignment:Splign:2.1.0"
     exon            1668..1726
                     /gene="Slc4a9"
                     /gene_synonym="Ae4"
                     /inference="alignment:Splign:2.1.0"
     exon            1727..1915
                     /gene="Slc4a9"
                     /gene_synonym="Ae4"
                     /inference="alignment:Splign:2.1.0"
     exon            1916..2029
                     /gene="Slc4a9"
                     /gene_synonym="Ae4"
                     /inference="alignment:Splign:2.1.0"
     exon            2030..2191
                     /gene="Slc4a9"
                     /gene_synonym="Ae4"
                     /inference="alignment:Splign:2.1.0"
     exon            2192..2370
                     /gene="Slc4a9"
                     /gene_synonym="Ae4"
                     /inference="alignment:Splign:2.1.0"
     exon            2371..2443
                     /gene="Slc4a9"
                     /gene_synonym="Ae4"
                     /inference="alignment:Splign:2.1.0"
     exon            2444..2512
                     /gene="Slc4a9"
                     /gene_synonym="Ae4"
                     /inference="alignment:Splign:2.1.0"
     exon            2513..2686
                     /gene="Slc4a9"
                     /gene_synonym="Ae4"
                     /inference="alignment:Splign:2.1.0"
     exon            2687..2842
                     /gene="Slc4a9"
                     /gene_synonym="Ae4"
                     /inference="alignment:Splign:2.1.0"
     exon            2843..2936
                     /gene="Slc4a9"
                     /gene_synonym="Ae4"
                     /inference="alignment:Splign:2.1.0"
     exon            2937..3163
                     /gene="Slc4a9"
                     /gene_synonym="Ae4"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cacggctccc aagattggta caagtctttc caagatgaag ctgccaggcc aagaggattt
       61 tgaaggctct gatgctcatg aaaacgtttg ctctgagcaa ctggacggtg acctaggccc
      121 tggctctggc cttgatggac cctcagacat agacaatggg aaagctcagg gatgcaagga
      181 cccgctgctc ttcattcaac taaatgagct gctgggctgg ccccaggcac tggagtggcg
      241 agagacaggc aggtggctgc tgtttgagga gaagctagac ataggcgcgg gccgatggag
      301 tgccccccat gtgcctacct tggcgctccc cagcctgcag aagcttcgag gtctgttggc
      361 cgagggcatt gtattgctag actgtccggc tcggagcctc ctggagcttg tggagcaggt
      421 cgtcagtggc gagtcgctga gcccagaact gagagggcag cttcaggcct tgctcctgca
      481 gagaccccag caccacatcc agaccacagg catccggccc tgcagagggt ctaatgcttt
      541 tagaaaggct tctcgtgatg aggacactct gctgaagcac cagaaccccc tgagacagaa
      601 gctgcctcca ggagctgagg cagcggcagt gttggcagga gagctgggct tcctggaaca
      661 gccactagcg gcctttgtaa gactgcagaa cccggtggtg ctggagcctc ttacagaggt
      721 ggtcctgcct agcaggtttt tctgcctcct cttgggtcct cccaccctgg gaaggagcta
      781 tcatgagacg ggacgggcag cagctgtcct cctcagtgac cctcaattcc agtggtcagt
      841 tcgtagggca agcaatcttc atgaccttct ggcagcccta gatgccttcc tacaggaggt
      901 gacagctcta cccccaggtc ggtgggacag gacagcccgg attcccccgc ccaaatgcct
      961 accctctcag cacaaaagat ttccctcgaa actgcaggag gtcaccagcc tctcccgcca
     1021 gagtgctgcc ttggcagaaa acaagcacca ccatgggccg cacacaccca tcccagaatt
     1081 gcaaaggacg ggcaggcttt ttgggggtct tgttcaggac gtgcgccgga aggcatgctg
     1141 gtaccccagc gatttcctgg atgccctaca tccccagtgt ttctcagcgg tgctctacat
     1201 ttacctggcc acagtcacaa atgccatcac ttttgggggt cttctgggag atgccaccga
     1261 aggtgcccag ggagtgctgg agagtttcct gggcacagcg gtggctggag ccaccttctg
     1321 cctgatggca ggtcagcccc tcactatcct tagcagcaca gggccagtgc tggtatttga
     1381 gcgcctactt ttttctttta gcagagatta cagcctggac tacctgccct tccgcctgtg
     1441 ggtaggcatc tgggtggcca cattttgcct ggcactggtg gctaccgagg ccagcttgct
     1501 ggtgcgctac ttcaccagat tcacagagga agggttctgt gccctcatca gcctcatctt
     1561 tatttatgat gctgtgggga agatgctgaa cttgatccgt gcctatccaa tccaaaggcc
     1621 aggatctcct gcctacagtt gcttctgtca atacccaggc acaggaggaa atgcatctga
     1681 atttgacagt acgatgttca aagacacaga ggatgtctta aacgtgcacc caggcctggt
     1741 caatgcttcc ttcctgccac catccgagtg catccggcaa ggaggttacc ctcgtggccc
     1801 tagctgtcac acggtgccag acatcgcctt cttctccctt ctcctcttct ttacttcttt
     1861 cctctgtgcc attgccctca agcacgtaaa gaacagccgc ctcttcccct ctgtggtgcg
     1921 aaaggtgttc agcgactttt cctcagtcct ggccatcctg ctgggctgtg gccttgacgc
     1981 ctttctgggc ctagccacac cgaagctctt ggtacccaca gaattcaagc ctacactccc
     2041 tgggcgtggc tggctggtgt ctccttttgg agctaacccc tggtggctga gtgtggctgc
     2101 tgccttgcct gctctgctgc tgtctatcct tatcttcatg gaccagcaga tcacagcggt
     2161 catcctcaac cgtgcagaat acagactgca gaagggagct ggcttccacc tggacctctt
     2221 ctgtgtagct gttttgatgc tgtttacatc agcgcttggg ctgccatggt atgtctcagc
     2281 cactgtcatc tccttggccc acatggatag tcttcggagg gagagcaaag cttgtgtccc
     2341 cggagaagac cccaacttcc tgggcatcag ggagcagagg ttgacgggct tggtggtgtt
     2401 catccttaca ggtgtctcca tcttcctggc ccccgtgctc aagttcatcc cgatgcctgt
     2461 gctctatggc atcttcctgt acatgggggt agcggcgctc agcagcatgc agttcatgaa
     2521 gagagtgcag ctgttgctga tgccaaggaa acatcagcca gacgtgctgc tcctgcggca
     2581 cgtacctctg atcagagtcc acctcttcac agccatccag cttgcctgcc taggtctgct
     2641 ttgggtaatc aagtctaccc ctgcagccat tgtcttccca ctcatgttac tgggcctggt
     2701 ggcagtccgg aaggcactgg agtggatctt ttcaccacag gaactcctct ggctggatga
     2761 gctcatgccg gaggaggaga agaccatccc tgagaacagg ccagagccag agcacttgtt
     2821 cagtggaaat gacagtgaaa attcagaact gatgtatcag ccaaaggctc cagaaatcaa
     2881 catctctgtg aattaactgg aatcacagtg tggagacctc aggaaacaga cacaaggtgc
     2941 cagagagatg attcagcagt caagagcgca tgcagctctt ccagaggacc taagtatgat
     3001 gcccaacatc tatatgcagc ttataactgt ccctaactcc agttccaggg gatccagcac
     3061 catgtgttag cttccttgag caccaggcat gcccaaagta cccttaaata catgtggtaa
     3121 aatactcata cacataaagt aaaaataaat aaatctttaa aaa
//
