LOCUS       XM_039111910            2466 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus solute carrier family 4 member 1
            adaptor protein (Slc4a1ap), transcript variant X2, mRNA.
ACCESSION   XM_039111910
VERSION     XM_039111910.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051341.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039111910.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2466
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2466
                     /gene="Slc4a1ap"
                     /note="solute carrier family 4 member 1 adaptor protein;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 8 ESTs, 1 long SRA read, 2 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 228 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:298805"
                     /db_xref="RGD:1307080"
     CDS             1..2214
                     /gene="Slc4a1ap"
                     /codon_start=1
                     /product="kanadaptin isoform X2"
                     /protein_id="XP_038967838.1"
                     /db_xref="GeneID:298805"
                     /db_xref="RGD:1307080"
                     /translation="MADATSQLEAPAPQDVSSEFKKPVLPVPPAVRSKAPASSPSVPE
                     DVKKECSTAQLDSGCGEPEVSPPQPDSEETGGPPVEQLRSPRVAPASGGPTRAPPYQE
                     PSWGSPATAPYSLETLKGGTILGTRTLKDTSYCLFGRLASCDICLEHPSVSRYHAVLQ
                     HRGSDPSGDSEDQGQGFYLYDLGSTHGTFLNKTRIPPRTYCRVHVGHVIRFGGSTRLF
                     ILQGPEEDREAESELTVTQLKELRKQQQALLEKKMLGEDSDEEDEADTTAGKRNTSGQ
                     DEEMGCTWGMGEDAVEDEAEENPIALEFQQDREAFYIKDPKKALQGFFDREGEELEYE
                     FDEQGHSTWLCRVRLPVDDSTGKQLVAEAIHSGKKKEAMIQCSLEACRILDTLGLLRQ
                     EAVSRKRKAKNWEDEDFYDSDDDTFLDRTGLVEKKRLNRMKKAGKIDEKPETFESLVA
                     KLNDAERELSEISERLKASSKVQSESSSQDSLDAFMSEMKSGSTLDGVSRKKLHLRTF
                     ELRKEQQRLKGLIKLVKPAEIPELKKTELQTTNAENKTKKLALPLFGAMKGGSKFKLK
                     TGTVGKLPPKRPELPPALMQMKDEPEVEEEEEEEEEEKAKEEHEEGVEDGGVRLSQGP
                     EPEPEAAGEHPGAPPEPSCSKETKSHEKHSHMEQSKGYQEMGKIMPSREDPSAPENEC
                     KKDRDELKKKKSGPGKFPPILSSKYPEDDPDYCVWVPPEGQSGDGRTHLNDKYGY"
ORIGIN      
        1 atggctgatg ctacctctca gttagaagcg ccagcacctc aggatgttag tagcgagttt
       61 aagaagcctg ttttgccggt gcctcccgca gtgcggagta aggctccggc ctccagtcca
      121 tcagttcctg aagatgtgaa gaaggaatgt agcacggcgc agctagactc tggatgtggg
      181 gagcccgagg tctcgccacc gcagccggac agcgaggaga ctgggggtcc accggtggaa
      241 cagctccgct ctccgagggt agctcctgct tctggcggtc cgacccgggc tcccccgtac
      301 caagagccat cgtggggcag cccagccacg gccccttaca gtctcgaaac cctgaagggt
      361 ggcaccatcc ttggtacacg caccttgaaa gacacgagct actgcctttt cgggaggctt
      421 gctagctgtg acatatgcct ggagcatcct tccgtgtctc ggtaccatgc tgtactacag
      481 caccgggggt cggatcccag cggagactct gaggatcagg ggcagggctt ttatctctat
      541 gatctgggaa gtacccacgg cactttcctc aacaaaactc gcatcccacc ccgcacttac
      601 tgtagagtcc atgtcgggca cgttattcgc tttggaggca gcactcggct ctttatcctt
      661 cagggaccag aggaagaccg agaggcagaa tctgaattaa cagtaacaca gttgaaggaa
      721 cttcgcaaac agcagcaggc gttattggag aagaagatgt taggtgaaga ttcagatgaa
      781 gaagatgaag cagataccac tgcagggaag agaaatacaa gtggtcaaga tgaggagatg
      841 ggttgcacgt ggggaatggg agaagatgct gtagaggatg aggccgagga gaaccccatt
      901 gccttggagt ttcagcagga ccgggaggcg ttttatataa aggatccgaa gaaggctctt
      961 caaggcttct ttgacagaga aggagaagag ttggaatatg aatttgatga gcagggacat
     1021 agcacttggc tctgcagggt gaggttaccg gtagatgatt caactgggaa acagctggtg
     1081 gctgaggcca ttcactcagg aaagaaaaaa gaagcaatga tacagtgctc actggaagct
     1141 tgtcggatcc ttgatacctt gggcttgcta cggcaggaag cagtatctcg gaaaaggaaa
     1201 gccaagaact gggaagatga ggatttttat gacagtgatg atgatacatt cctcgatcgg
     1261 accggcctgg tcgagaagaa gcgcttgaac cggatgaaga aggctggcaa gattgatgag
     1321 aagccagaaa cttttgagtc actggttgca aaactaaatg atgccgaaag ggaactctct
     1381 gagatttctg aaaggctcaa ggcatcaagc aaagttcagt cagaatcatc gtctcaggat
     1441 tctttagatg cgttcatgtc agaaatgaaa tcagggagca cgttagatgg ggtgtcccgg
     1501 aagaaacttc atctgaggac ttttgaacta cggaaagaac aacagagact gaaagggtta
     1561 ataaaacttg taaagccagc agagatccca gaactaaaga aaactgaact tcagactaca
     1621 aatgcagaaa acaaaactaa gaaacttgca ctgcctctct ttggtgccat gaaaggagga
     1681 agcaaattca aattaaaaac tggaacagta gggaagttgc cacccaagcg tcctgaactc
     1741 cctccagctt taatgcaaat gaaggatgaa cctgaagtag aggaggagga ggaagaggaa
     1801 gaggaggaga aagcaaagga ggagcatgaa gaaggagtgg aggacggagg tgtcaggctg
     1861 tctcaggggc cggagccaga gccggaagca gccggggagc acccgggtgc tcccccagag
     1921 ccctcgtgct ccaaggagac aaagagccat gaaaagcaca gccacatgga gcagagtaaa
     1981 ggttatcaag agatgggcaa aataatgcca tcacgtgagg atccttcagc accagagaat
     2041 gaatgtaaaa aagacagaga tgagttgaag aaaaagaaat ctgggccagg gaaatttcca
     2101 cccatacttt cttccaaata tcctgaggat gacccagact actgcgtatg ggtcccacct
     2161 gaaggtcaaa gtggagatgg cagaacgcat cttaatgaca agtatggcta ttgattggtt
     2221 cagagtccca gaggaagacc ttgtgggcca caggatgtct gggagaaggc atcaagtctg
     2281 acccgggaag ttcagacggc catttgtaaa atctggtgac tggctttttc ttctgtaccc
     2341 ctgacttcct aaactcacct gcccattgga ttctcctgga tttcagtgtt tatatttaag
     2401 tgtctgtgta tatatgtaaa aaagaaccat gcacactgag aataaagtaa gagacatgac
     2461 ccatga
//
