LOCUS       XM_039080227            7988 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus solute carrier family 45, member 4
            (Slc45a4), transcript variant X3, mRNA.
ACCESSION   XM_039080227
VERSION     XM_039080227.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039080227.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7988
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..7988
                     /gene="Slc45a4"
                     /note="solute carrier family 45, member 4; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 8 ESTs, 6 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 27 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:315054"
                     /db_xref="RGD:1309971"
     CDS             5631..7988
                     /gene="Slc45a4"
                     /codon_start=1
                     /product="solute carrier family 45 member 4"
                     /protein_id="XP_038936155.1"
                     /db_xref="GeneID:315054"
                     /db_xref="RGD:1309971"
                     /translation="MKMAPQNADSESMQVQELPVPLPDPQKPRDPAAETQEETTSEAS
                     IDRIPTRLWVMHGAVMFGREFCYAMETALVTPILLQIGLPEKYYSLTWFLSPVLGLIF
                     TPLIGSASDRCTLSWGRRRPFILVLCVGVLIGVALFLNGSAIGLALGDVPSRQPIGIV
                     LTVLGVVVLDFSADATEGPIRAYLLDVVDSEEQDMALNIHAFSAGLGGAIGYVLGGLD
                     WTQTFLGDWFQTQNQVLFFFAAVFFSVSVALHLFSIEEEQYNPQQDRGPEDATLPSTG
                     LQPGAPAPAPRLSSLGGGMQDGSPPFPDEVQSEHELSLDYLDVDIVRSKSDSVLHMAD
                     STLDMEPQLLFLHDIEPSIFQDASYPSTPQSTSQELLRAKLPRLSTFLRESTKEDDTL
                     LDNHLNEAKVPNGRGSPPMNPLSHSKVDLKPSVTSSSMRRRRHMFHRQSSSTFSYYGK
                     IGSHCYRYRRANAVVLIKPSRSMSDLYDLQQRQRSRHRNQSGATASSGDTESEEGETE
                     TTVRLLWLSMLKMPKELMWLCLCHLLTWFSVIAEAVFYTDFMGQVIFKGNPQAPSNST
                     KWHAYNAGVKMGCWGLVIYAATGAICSALLQKYLDNYDLSIRIIYMLGTLGFSVGTAV
                     MAMFPNVYVAMVTISTMGVVSMSISYCPYALLGHYHDIKEYVHHSPGNSKRGFGIDCA
                     ILSCQVYISQILVASALGGVVDTVNTIVVIPIVASVGSFLGFLTATFLVIYPEVSEEA
                     KEEQKGLSSGAAGEGESGAGTEKPTVLKLSRKGGLRGLMETESMV"
ORIGIN      
        1 agggctacag agtgagttcc aggatggcca aaaacacagg aaaaccctgt cttgaaaaca
       61 aaacacgccc cccctccaaa aaaaacaaca gaaagaaatt aagctgaagt cagactcaag
      121 cccccactgt tctcttttat cccccaaagt atcttaagcc tctcctttta ataagttcat
      181 tttccattcc ctgttctgtc agtgagtact gagcttgccc agagactgct gcgtacacct
      241 ttggaggtgg tgaggcccca ggacctgcca cctgctgggt gctgaggatt aacaacacag
      301 agcctggacc agaaacagag gtcacctacc caggcaccca gagccctgca gcttctcttc
      361 ctccttctcc ttctccttct cctcctcctc ttccttcttt cttcttcttc ttttgtaaaa
      421 ctgcctcttt gtcagctttc acttcttgtg taggcaggtc ccaagctaat atttatcctg
      481 caaaaaaaaa aaaaatttaa aaaatgttag cgtggggagc atttacaagg actttattaa
      541 ttgttgaaag ggagttactg ccttaaactg agcagttgtg cttaacttga cttttgatta
      601 aatagttgtt aacagttgga atcagtttgg tctttctcgt aaaggcttct ttttcatgtg
      661 agtattgtct gttgtggcag gctttggctg tatgctcagg gctcagacct ggacctagac
      721 caggaacact gggtgctttt gtgatgcata tatccaggca ggcttttttt tttaatgatt
      781 tattttttat tttatgtgca ttggttttgc ctgaatgtat gtctgtgtga gggtgtttgg
      841 tcccctggaa ctggagttac agacagttgc aggctgccac atgggtgctg ggaaatgaac
      901 tcgggacctc tggaagagca accaatactc ttaaccactg agccatgtct ccaggtccct
      961 acacctgctc ttttgtgatt ggcaggcttt tcagaaatgc agacttttat actagaagct
     1021 cccaacttta tatgagttgt cactttaaaa cctgggagga cctccttcaa tgtgctacag
     1081 gtgaccacag atctgaagga tgggtgttag ttttgaactc cttaaaaaat gaaactcttg
     1141 tgatgttatt ttgttgtaaa gctagccaca gctggcttac ctctagtgca cgcccttcac
     1201 attgcagtgc cctagacttt ccaagtgggt gggtgtggcc atgaaaggtc tccttgaagg
     1261 caggaaagag ccagggactt cgcatccatg gcacgtccac tttcagcagc ttctgctttc
     1321 tctaggcact cagaatagga agatgagtga gggggaaggg atagtccggg tcctagtgta
     1381 tgggctggtg tggtctgaga gtgagggatg ggttataccc caagagcaag gaggggtgcc
     1441 agtgacagta catggggtgt tgagagctgg agtaaggaca tctatgctga ggcccagagg
     1501 ccagggagct aaagtgaggt ctaggacaga ggtgattgtc cctgaggcta gagcccctcc
     1561 tccacatctc agtctctccc tttcttggtg taacaggttc tgggctaagc tttgttagca
     1621 gaatcttctg accttttgag tgggtctcca gctcttaaag accttgttaa gaccttagga
     1681 cttcctcttt ggtcagctga ttccattttc ttgcaagcct cttactgttt tcccttcccc
     1741 tggcctgtgg ccaacactgg gagctgtctt tctgtaactc aaggcagtat acacagctgg
     1801 ccactgtctg tccccttggg catcagcctg ggtataaaac tcctgttggg ttgaattcta
     1861 tggagtacat gaggagactg cttgttctct tactaacctg atggtgctgt ctaggtgttg
     1921 gaactctacc cagctgtttg ggatggcagc actgagtaag ctacagaggt gtgttcaaag
     1981 gacattgtaa aattgtcaga tcgcacacaa gtttgcagtc taaacacaga ctttcaaatg
     2041 aatttccatt tgtttacatt ggagacaaaa tgcagattac tttacatgta ttcattttgg
     2101 cattctatat actatagaat ctagtgattc gtacctatag tagattcaca tgtgaccctg
     2161 cactaggcat ttacaggaaa cacacacaca cagtgtatac aagaatgagg aaccactgtg
     2221 ctcagtgcag tgtggcctgc ctacttctct cagcataaag gttcatgttt cagctttaca
     2281 tccagggcag agtagcaaga tttgctaaat aagggacaag cattccttaa tcatctttgc
     2341 aatgggtttt gtctgcaaat ccatctctgt agctgtgttc caattctctt gtttctaagt
     2401 gctcactgca tagatgctcc agtatgctgg ctccagtctt tatttgactg gaatctacac
     2461 aaagcataga tataaggatt ctaccacagt cttagagatg gctgctagtc tcccagaatg
     2521 gctgaaatgt tttgtgcaca tttggatctg catgctattc catggaaggc taccagtgac
     2581 ctctggcctg tgcctgagcc tttccaagtt agcactgcat gcagctggat tgcaagtggc
     2641 tgtgttccag acttagtcaa gacagcagcg ttatcgggct ggctcccaga ccaggacctg
     2701 gtactgtatg agagcctagg cctctgtccc ctacaaatga ctgagtggaa aggggacctg
     2761 tttatgtctt cagttataaa accaaattgg gtcttttgct tggccctgag gagcattgct
     2821 ggaataaagc tgcttcctcc ctcttaaaga gtcttgttat gagtgaggtc caggctgccc
     2881 tcagacttga gatcctcttg gctcttcttc ataaatactg aaattgccac atgtcctcca
     2941 tacctggcct gtgtagagct tcttgaccca tatgggcttg tgtatactca ggagaagcag
     3001 gcttagggtt cttgtctctt ttcccctcta gcctagaaag aggagttacc ttgttgtgta
     3061 tccgagcctt ggaggatgtt tgggtagaca agcagtctgt ctgtcttcaa taatttagtt
     3121 ttgtgtttag ctgaagttag ttctagagca gtgtgaagaa cctggctgtg acccacagaa
     3181 gcagcacttt gggggtgtgg ggatggtgcc agagattcag tgagatacct tgtgcatgtt
     3241 ggcaagcact ggcactgagc tacaacccag cctgaaataa tgcctttggc tatgtgttca
     3301 tatgttcaag acctaatgcc taaaagggtt gtatctttta catctagcat tgggtgtttc
     3361 ctgtcagaag acaacaatat acaacatgat tttatgtgtg gatgtgtact ttgtagctaa
     3421 tgtctctaga cactggaggc ttcttagtgt aaaaccccag tggccttgtt cctttgaatg
     3481 cagtgggtat tgagtgatta ctctgcactg taatgttgtg gctgtgtcct tcccaggttt
     3541 gccatctcgg cagccacacg gggtctagag cagcagtagt taatccaagg aacagcaagc
     3601 cacagtctct agtgcgaaga aaatgctggg ggacctggta taccaatttt tctccagagc
     3661 caaaagagtg ccagatagca tttccgccac attcctcttt gtcaaggtgg aggtttgggg
     3721 gtggcccgtt cctgctatgc cagctgaccc aaggttccag ccgttctgag tggagcaggg
     3781 aggagaaaag gaagaggaag tggctggcca gttcccttcc tctctctgtg agtggcatgg
     3841 gggtctgtgt ggaattgggc ttgccagggt gaagcaggag tccttcgggt gctatttcct
     3901 cagaggttac ctttccagcc tcctttggag tctgaacaca gctatgctgg tgaacagtgc
     3961 cctgtcatag gcctgtggtt ctaagtgagg agttgctggg acactggtgc tgatcttact
     4021 gttgggttgt ttggccttag gaggggttgg tgtgggggag aagctgtagc cccaggctat
     4081 agccacaagt aagttttctt tatccattca aacctagact tttgaaactt tacccaatac
     4141 agcggtaatc ctctcctgtt cccccactcc tatttccagc tgcactcact ggtgtctgcc
     4201 atgtgccatc aaccaaggtc tgaaaatgtt aaaaagaaag ttctagaagt tgtttaaacc
     4261 atgtgcattc tgagtaatat ggcgaagcct ctgttgtccc ctcatgccca cctcaggact
     4321 gagttccttt gtcctggttc tatagtgtgt ctaccactca ctcagtcaac aagggaaatc
     4381 cctaaccgaa tagtccagga agagttatac tgaatttgct gaggtctgtg tggtcctacc
     4441 cctttgctct gccgcatggc agctgcaacc ctgggtggcc caggtgaaat tcatgcatgt
     4501 agaagaaagt ggaacagcaa ggtgcttggg atgtgtcgat gctggcgagg ggactagtca
     4561 gtactgcatg cctcccctct tttaaaatgt cagcatgtat ctgaccatgt ggactgacat
     4621 ttcaggaact tccaccactt agagctgagc ctcacagcct ctttgcctca gtacacattt
     4681 aggatctgga aggctctgtc tatttagact ttgcatgcac cactgtctga ggggtcttca
     4741 cagtggtgtt actcaactgc aatcctatct ttggtctgct cttgagtatg tgtacgtaaa
     4801 tgacaggttt ttatttaatt tgtcataccg tgtactcttt ctcctactca cttccctgtc
     4861 ctgacccatg gagggcatgg tcagtaacag aatcacagtc tgtcggcatc tgacttgcac
     4921 tgaacacagc actgagaggg tctgatcagt gctcagcttg ggacttgtgt ctcaggcccc
     4981 tctcgagggt ttgatattag agctgcaaca acttccttca gccagcctgg attccaggag
     5041 cttctcagtt tagaagcttg ctgcagtttc catggcagcc agagcttcat tctgactcta
     5101 gtggcctgaa ccagcaaatc tgctagtgct agaaaccttt agaaaagagg gaggagaaac
     5161 ctctcattgc cagttaatta aaaaacagat ccctcctgtt cagctgatag tgcagatcga
     5221 agaaacatac agacccagat cctctagccg ctccatgggg agtcacagaa gaccgcctgt
     5281 gtgtgtcaga tccccacctc tctgtagcaa gagaagtgac tacagcgcct tcacagtcat
     5341 gatgatgaaa ctggtattaa ctgagtggcc cttatggatt tttaactcta actcacagtg
     5401 agccagcaag ccatatgttt acacttcaac caaaaaccct tctgtgttgc tgcacttctt
     5461 gtgtgagaag ttgagacgcc tgttggtaca gagtggaata caagagttac ttgccgtgga
     5521 atgtacctgc agcagagcga gaagacgtct tagtttatca ttggagagag atgatagtat
     5581 tatttatata ggtagaataa atatatatat atatatatat tttggtggta atgaaaatgg
     5641 ctccgcagaa tgccgactcg gaatctatgc aagtacaaga gctgcctgtg cccctgccag
     5701 atcctcagaa acccagagac ccagcggctg agacccaaga ggagaccaca agtgaggcgt
     5761 ccatagacag aatccccaca cgcctatggg tcatgcatgg ggcagtgatg ttcggcaggg
     5821 aattttgtta cgccatggag acagcactgg ttacacctat actgttacag ataggcctcc
     5881 ctgagaagta ctacagcctc acctggttcc tgagccctgt tcttggcctc atcttcacac
     5941 cgcttattgg ctctgcaagt gaccgctgta ccctgagctg gggccgccgg cggcccttca
     6001 tccttgtgct gtgtgtggga gtcctcattg gtgttgcact tttcctcaac ggctccgcta
     6061 taggtctggc gcttggcgat gttcccagcc ggcagcccat tggcattgtc ctcacggtgc
     6121 tgggagtggt ggtcctggat ttcagtgccg atgcaactga ggggcccatt cgtgcctacc
     6181 tgctggatgt ggtagacagt gaggagcaag acatggccct caacatacac gccttctctg
     6241 ctggcctcgg tggggccatt ggctacgtgc tgggcgggtt ggactggacg cagaccttcc
     6301 taggggactg gttccagacg cagaaccagg tgctgttctt cttcgctgca gtcttcttct
     6361 ccgtgtcggt ggctctgcat ctctttagca tcgaggagga gcagtacaac ccacagcagg
     6421 accgcgggcc tgaggacgcc accctgccca gcaccggtct ccagcctggc gccccggccc
     6481 ccgccccccg cctcagctcc ctcggtgggg gcatgcagga tggcagcccc ccatttccag
     6541 atgaggtgca gtcggagcac gagctgtcct tggactacct cgatgtggac atcgtgcgca
     6601 gcaagagcga ctcagtgctg cacatggctg actccacact ggacatggag cctcagctgc
     6661 tcttcctgca tgacatcgag ccctccatct tccaagatgc ttcctacccc agcacccccc
     6721 agagcaccag ccaagagctc ctgagggcca agctgccccg cctgtccacg ttcctcaggg
     6781 agtccaccaa ggaggacgac actttgcttg ataatcactt gaatgaagct aaagtcccaa
     6841 atgggagagg ctccccacca atgaaccccc tcagccactc taaggtagac ttgaagccct
     6901 cagtcacatc cagttccatg cggcggcgta ggcacatgtt tcacaggcag tcttccagca
     6961 ccttctccta ctacggcaag attgggtccc actgctaccg ctaccgccgg gccaacgccg
     7021 tggtcctcat caagccgtcc cggagcatga gcgacctgta tgacctgcag cagcggcagc
     7081 gctcccggca ccgcaaccag agtggggcca ccgcctccag cggggacaca gagagcgagg
     7141 agggtgagac agagaccacc gtgcgcctgc tgtggctgtc catgctgaag atgcccaagg
     7201 agctgatgtg gctctgcctc tgccacctcc tgacttggtt ctctgtcatc gcagaggctg
     7261 tcttctatac tgacttcatg ggccaggtca tcttcaaagg gaacccccag gccccctcca
     7321 actccaccaa gtggcacgcc tacaatgctg gcgtgaagat gggctgctgg ggcctggtca
     7381 tctacgctgc tactggtgct atctgctcag ccctgctaca gaagtacctg gacaactatg
     7441 acctgagcat cagaatcatc tacatgttgg ggacactggg cttctctgtg ggcaccgctg
     7501 tgatggccat gtttcccaac gtctatgtgg ccatggtcac catcagcacc atgggcgtcg
     7561 tctccatgag catctcctac tgcccctacg ccctcctagg gcactaccat gacatcaagg
     7621 agtacgtcca ccacagtccg gggaattcca agcgtggatt tggcattgac tgcgccatcc
     7681 tctcctgtca ggtctacatc tcccagatcc tggttgcatc tgcccttggg ggcgtggtcg
     7741 acactgtgaa tactatcgtt gtcatcccca tagtggcctc tgtgggctcg ttcctgggct
     7801 ttctgacagc cacattcctg gtcatctacc ctgaggtgtc agaagaagct aaggaggaac
     7861 agaaaggcct gtcctcaggg gccgctggtg aaggcgagag tggggcaggc actgaaaagc
     7921 ccactgtcct gaagctatct cggaagggtg gccttcgggg gctgatggag acggagtcca
     7981 tggtgtga
//
