LOCUS       NM_001399666            5148 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus solute carrier family 39, member 9 (Slc39a9),
            transcript variant 2, mRNA.
ACCESSION   NM_001399666
VERSION     NM_001399666.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 5148)
  AUTHORS   Kabbesh,H., Bulldan,A., Konrad,L. and Scheiner-Bobis,G.
  TITLE     The Role of ZIP9 and Androgen Receptor in the Establishment of
            Tight Junctions between Adult Rat Sertoli Cells
  JOURNAL   Biology (Basel) 11 (5), 668 (2022)
   PUBMED   35625396
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5148)
  AUTHORS   Bulldan,A., Dietze,R., Shihan,M. and Scheiner-Bobis,G.
  TITLE     Non-classical testosterone signaling mediated through ZIP9
            stimulates claudin expression and tight junction formation in
            Sertoli cells
  JOURNAL   Cell Signal 28 (8), 1075-1085 (2016)
   PUBMED   27164415
  REMARK    GeneRIF: in Sertoli cells, testosterone acts through the receptor
            ZIP9 to trigger the non-classical signaling cascade, resulting in
            increased claudin expression and tight junction formation.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000006.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360194.1926056.1,
                                           SRR26360190.2481192.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-776               JAXUCZ010000006.1  106022858-106023633
            777-885             JAXUCZ010000006.1  106041636-106041744
            886-1086            JAXUCZ010000006.1  106045341-106045541
            1087-1155           JAXUCZ010000006.1  106052009-106052077
            1156-1241           JAXUCZ010000006.1  106054231-106054316
            1242-1376           JAXUCZ010000006.1  106055335-106055469
            1377-5148           JAXUCZ010000006.1  106057963-106061734
FEATURES             Location/Qualifiers
     source          1..5148
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /map="6q24"
     gene            1..5148
                     /gene="Slc39a9"
                     /note="solute carrier family 39, member 9"
                     /db_xref="GeneID:314275"
                     /db_xref="RGD:1311236"
     exon            1..776
                     /gene="Slc39a9"
                     /inference="alignment:Splign:2.1.0"
     CDS             681..1607
                     /gene="Slc39a9"
                     /note="isoform 1 is encoded by transcript variant 2; zinc
                     transporter ZIP9; ZIP-9; zrt- and Irt-like protein 9;
                     solute carrier family 39 (zinc transporter), member 9"
                     /codon_start=1
                     /product="zinc transporter ZIP9 isoform 1"
                     /protein_id="NP_001386595.1"
                     /db_xref="GeneID:314275"
                     /db_xref="RGD:1311236"
                     /translation="MDDFLSISLLSLAMLVGCYVAGIIPLAVNFSEERLKLVTVLGAG
                     LLCGTALAVIVPEGVHALYEEVLEGKHHQASEAKQNVIASDKAAEISVVHEHEHSHDH
                     TQLHAYIGVSLVLGFVFMLLVDQIGSSHVHSTDDPESARPSSSKITTTLGLVVHAAAD
                     GVALGAAASTSQTSVQLIVFVAIMLHKAPAAFGLVSFLMHAGLERNRIRKHLLVFALA
                     APAMSMLTYLGLSKSSKEALSEVNATGVAMLFSAGTFLYVATVHVLPEVGGMGHSHRP
                     DTTGGRGLSRLEVAALVLGCLIPLILSIGHQH"
     exon            777..885
                     /gene="Slc39a9"
                     /inference="alignment:Splign:2.1.0"
     exon            886..1086
                     /gene="Slc39a9"
                     /inference="alignment:Splign:2.1.0"
     exon            1087..1155
                     /gene="Slc39a9"
                     /inference="alignment:Splign:2.1.0"
     exon            1156..1241
                     /gene="Slc39a9"
                     /inference="alignment:Splign:2.1.0"
     exon            1242..1376
                     /gene="Slc39a9"
                     /inference="alignment:Splign:2.1.0"
     exon            1377..5148
                     /gene="Slc39a9"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gagacaatcc ggaagtggga gtaatgaaga ggtgccactt ggcggccatg gcagctgtag
       61 tattggcggc tcagggtcag ggcctggctg agggaagtac catgggtagc accgggtgta
      121 ggacagagac agcgtcgtat cgactttgct gttgaatcct ccagcccatt gttagagact
      181 tgcaggacat cttgcccgac tctagactcg aaaggtactt tgctggcact ggtgggctgg
      241 tcccttccct gggggcgtat cacctgcggt gccacccctg ggaactggta ccgcgtgtgg
      301 agaagacact tgggtttacc tttttttttc ctgctgctac cagggacgtt gtcttgggga
      361 gcgggtcgtc gtgtcaccct cattctgacg attaaggaga tctctttttg cacaatttct
      421 ccatctgtta cctaccggaa tcccagtgac tggcaaccaa gtacctaaga ctgcgcaaag
      481 ttttctctgg tgctagtatc agcaaaagga gcttgcttct taagagagcg gcgggcttca
      541 tgaactcacc ggccggtggc aaggctgaaa gaagtgagga aattcccgtt ttcttggaag
      601 accacacgtt taaacagccc aagcgccgtt tgaaactgga attttaaagc ctggtggagg
      661 ggtgactaca ggagggcaga atggatgact ttctctccat tagtctgctg tctttggcaa
      721 tgttggtggg atgttacgtg gctggaatca ttcctttggc tgttaatttc tcagaggaac
      781 ggctgaagct ggtgactgtg ttgggtgctg gccttctctg tggaactgca ctggcagtca
      841 tcgtgccgga aggggtgcat gcactttatg aggaggtcct ggagggaaaa caccaccaag
      901 ccagtgaagc gaagcagaat gtgattgcat cagacaaagc agcagaaata tcagttgtcc
      961 atgagcatga gcacagccac gaccacacac agctgcatgc ctacattggt gtgtccctgg
     1021 tactgggctt cgttttcatg ttgctcgtgg accagattgg cagctcccat gtgcattcca
     1081 ctgacgatcc agaatcagca aggcccagca gttccaaaat caccaccaca ctggggctgg
     1141 ttgtccatgc tgcagctgat ggtgtagctt tgggagcagc agcctctact tcacagacca
     1201 gtgtccagtt aattgtgttc gtggcaataa tgctacataa ggctccagca gcatttgggc
     1261 tggtttcctt cctgatgcat gctggcctgg agcggaatcg aatcagaaag cacttgctgg
     1321 tctttgcact ggcagcacca gccatgtcca tgctgacgta cttaggatta agtaagagca
     1381 gtaaagaagc cctttcagag gtcaatgcca ctggagtggc catgcttttc tctgccggga
     1441 catttcttta cgttgccacc gtccatgtcc tccctgaggt gggtggaatg gggcacagcc
     1501 acagacctga caccactgga gggagaggcc tcagccgcct tgaggtggca gccctggttc
     1561 tgggttgcct cataccactc atcctctcaa taggacacca gcactaacca gtcaggttcc
     1621 agcctcagtc cacggccatt gccatcgggg aagaactagc gtgtgacgct cctcacttcc
     1681 tcagtgtctt gtctcacctt gcccatctcc acccctgttc ctagagtcca agggagatga
     1741 gagtcaatcg tggaaagtgg gacagcatat agcaggaaca tcagaattag acagactttg
     1801 tgttgtcttt taaagggact ttgatgtatt gagttttgat gtttctctta accctattct
     1861 cagggaagat ggaatttagt tttaaagaaa agtggagaac ttcatacaat gaaatagtaa
     1921 ttatgaaact tcagtgttct gtaattaagc taaagttttt tcccttagta tagaggctct
     1981 gccactttac ccattggttt taacatggtt ctcaccatgt aagactggtg ctttagcatc
     2041 tgtgccacag ccttgagaga aggcgggaac acccatccct tagatgctaa agatgatggc
     2101 aactaatttg aggttagaat aaggaaaata agagcaggag aaaaaagctg aactgaaccc
     2161 aaaagaaaca tccactgaaa ggggtgtcta gagtcatcaa cagctccttt gcacgtgcct
     2221 ccctaaatag agcctgccct tccttccagt agagcaatgg aggtgggact ggcttttgaa
     2281 gaggggtctg ttatcatata gcattttttt aaaaagtatc ttttgcagaa tacttgtctg
     2341 tagcacactc ttagtagcca gattctgttc aggcacagga tttctgtcaa gaacagtctg
     2401 atcacagtga aattaaggga tgttaaattt tccaggaatt tggatagtta ctgatatctt
     2461 gtagtaacct ttttaaaaag taacactatt acaaagtatg ttgtcctttt cttccagtca
     2521 gtggttctca accctctgaa cactgcaatc ctttaataca gttcctcatg ttgtggtgcc
     2581 ctcccaacca taaaattatt ttgttgctac ttcataactg taattttact actgttatga
     2641 tctgtaatgt aaatgtctga tacaggctat ctgatatgcc acctttgtgg gcatcgagac
     2701 ttacaggttg agaagcgctg ttctaagtat ttcttttagc agcctctgtc cctctggctg
     2761 agcccttgcc cagagtggag agtgtttctg tccactccgt agctcttgag cagaaggcgg
     2821 tggggctgta tcagaaggga gtatctgctg ctggcctcag tctccttgaa atcatgtctg
     2881 catcccactc ttcccgtgct cttcccctcc ccagcctacc cccactgtgt actactactg
     2941 ctggtgatgt cagtccttgt gtgaggtgaa ttctcaccac ttctttaacc atgaagacag
     3001 cactgtttct tcttcatttc cttcacctaa gttacctttg tgcccaatac aactttttta
     3061 caccctcaaa aatgtcacct cctcatgaga gttgacacag tcactagtac tctgataatt
     3121 taagaaattg agacagcaaa agtattcaac aaaggtaatt cttccatgtt tgccaaaatc
     3181 tgaataaatc ctagtcagat aaatgtataa tactgtatta atttacattt tctgtaccat
     3241 ttcagaaaca ctttacataa acagggagcc aaggctagtt ttttcagagc agtgagtgca
     3301 gtcattgtgt tttctgtgac atctgtgcca gcatgcctgt agattttctc tcctgaattg
     3361 tcactaggtc agccggcagc tgtggggtta aacttgtgcg ccctctgctg gctgtagtgg
     3421 agaaagcagc agaaatgaga cgcagctctg tgtggaggct ggtacccatt gcatcccgag
     3481 ctaaagtgtt aatgtgtgca gtgtgggagt tgggggtgac tctcgtaata ggtgactagg
     3541 aaaggtttgg gctcatctag tccttccaaa gtacagatgt cttgatctct ctagaggctc
     3601 actttgtcgg ggtggtccgg gtagaagcag cttctgtcac cttgctccgt gcagtggtca
     3661 gacacttgtt gtgctggcca gagcctcttg ttcagcagtg ccttgccaac tcactcgaag
     3721 ttgggctaga atatcatgtt gggtagggcc ttggactctg gcaaggagtg aaccatcaaa
     3781 cgtccaaatc tgccttcctc tctgggcctc agtagtagtg agctttccat gcctggagct
     3841 gctgcctggg gactgagtcc cttccctgct ctgcaggctc agatagccat atgactctta
     3901 atagggctca gatgcaggag aggcagcagg aaccagcaga gcctccatct agtgggggag
     3961 aggtcgctca tgcagcaggc agtgccccga aagcagccac cttgatcgct tcacaacacg
     4021 tttcagttct gttttcttcc tcctaactcc ctctggaggt gtggatgcct taatgtgcaa
     4081 acacacttga acacattggt gatacttgag ctgctgccac gattacaagt ggaattatgg
     4141 gctaccaaag aagcaattga tgaaaaagca tgggctatcc ttcctcatga ccaaagcaat
     4201 cttatttggg attagagttc ctttccccca gaatctagat gcatcccccc tccccagttc
     4261 ccagtgttgt cagtctccga gtcagcaggg cagtgatgtc cgtttgattc cgctttcctg
     4321 tgtgtgctat tgccagcttg gttcttacag gcagactttc tggcctgaaa atgccaacgg
     4381 ttggaatggc actacccact gagccaagtc aacctgttct ggggatctgg gtcattagaa
     4441 gaaagggagg gtctgttctt ttagaaaggg gaaaatagat ttgtttaaat cagtctgtca
     4501 ccactggctg gttttatttt tcaagaatta gagctaggag gaacatagca gtgacagagc
     4561 gtgttaagcc ttgaccctca tgctagtgag gttctgaaca tgggactgta tgtcaatagc
     4621 acaagcctct aaaacaccct taccttttgg gccagagccc cagactactg gggctcacac
     4681 agtcatcggg caagagtcct ggaggcagac ttgtgttcag tgcagagtgg gacgcacccc
     4741 tgaagagcac tggctgagat actacacaac tcagcctttt taactcgaga catcgaagtt
     4801 cagctcggga gagctgaggg tgggggctgg tgggaaagga ctggcagaca gtaggacttc
     4861 cttacatgtg ctcagccctc acagagccaa gcacagagac tggctttgct ctgtctgccg
     4921 tgtcttcccg aaaactggga ctctaatggt aacaccatga ttcccctggt ttggtggcct
     4981 aaacggtgat tttaaatgtc tccttttctg gattctttgt atacataaac tcattccatg
     5041 gatggctgcc ttataatttt gtgtctttcc actttaattg tgaatggttt aaaaattgct
     5101 gtttccgatt tgttttatga tattaaattt ttattagtgc atacctta
//
