LOCUS       NM_001013099            2318 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus solute carrier family 38, member 6 (Slc38a6),
            mRNA.
ACCESSION   NM_001013099 XM_216732
VERSION     NM_001013099.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2318)
  AUTHORS   Bagchi,S., Baomar,H.A., Al-Walai,S., Al-Sadi,S. and Fredriksson,R.
  TITLE     Histological analysis of SLC38A6 (SNAT6) expression in mouse brain
            shows selective expression in excitatory neurons with high
            expression in the synapses
  JOURNAL   PLoS One 9 (4), e95438 (2014)
   PUBMED   24752331
  REMARK    Publication Status: Online-Only
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AY266018.1.
            
            On Apr 20, 2005 this sequence version replaced XM_216732.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AY266018.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2318
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="Sprague-Dawley"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /map="6q24"
     gene            1..2318
                     /gene="Slc38a6"
                     /gene_synonym="Snat6"
                     /note="solute carrier family 38, member 6"
                     /db_xref="GeneID:299139"
                     /db_xref="RGD:1310330"
     exon            1..167
                     /gene="Slc38a6"
                     /gene_synonym="Snat6"
                     /inference="alignment:Splign:2.1.0"
     CDS             60..1433
                     /gene="Slc38a6"
                     /gene_synonym="Snat6"
                     /note="probable sodium-coupled neutral amino acid
                     transporter 6; amino acid transporter SLC38A6;
                     Na+-dependent neutral amino acid transporter; NAT-1;
                     N-system amino acid transporter 1; Na(+)-coupled neutral
                     amino acid transporter 6"
                     /codon_start=1
                     /product="solute carrier family 38 member 6"
                     /protein_id="NP_001013117.1"
                     /db_xref="GeneID:299139"
                     /db_xref="RGD:1310330"
                     /translation="MQASRYSIEAEPGWYVSVQQPEEAVAAEEWSPLLSNEPRRQGSS
                     GASFGLSVFNVMNAIMGSGILGLAYVMANTGILGFSFLLLLVALLASYSVHLLLAMCI
                     HTAVTSYEDLGLFAFGLPGKVVVAGTIIIQNIGAMSSYLLIIKTELPAAISEVLPSDH
                     SGAWYLDGQMLLIIICVGIVFPLSLLPKIGFLGYTSSLSFFFMVFFALVVVIKKWAVP
                     CPLTLNCINAVFQISNATDDCKPKLFHFSKESVYAIPTMAFSFLCHTSVLPIYCELRS
                     PSKKRMQNVTNTAIALSFLVYFVSALFGYLTFYDKVESELLQGYSKYLPHDAAVMAVK
                     LCILFAVLLTVPLIHFPARKALMMILFSNYPFSWIRHSLTTLALNIIIVLLAIYVPDI
                     RNVFGVVGASTSTCLIFVFPGLFYLKLSREDFLSWKKLGALSLLSTGTVVGSFSLVLI
                     ILDWVNK"
     exon            168..298
                     /gene="Slc38a6"
                     /gene_synonym="Snat6"
                     /inference="alignment:Splign:2.1.0"
     exon            299..372
                     /gene="Slc38a6"
                     /gene_synonym="Snat6"
                     /inference="alignment:Splign:2.1.0"
     exon            373..425
                     /gene="Slc38a6"
                     /gene_synonym="Snat6"
                     /inference="alignment:Splign:2.1.0"
     exon            426..465
                     /gene="Slc38a6"
                     /gene_synonym="Snat6"
                     /inference="alignment:Splign:2.1.0"
     exon            466..544
                     /gene="Slc38a6"
                     /gene_synonym="Snat6"
                     /inference="alignment:Splign:2.1.0"
     exon            545..627
                     /gene="Slc38a6"
                     /gene_synonym="Snat6"
                     /inference="alignment:Splign:2.1.0"
     exon            628..686
                     /gene="Slc38a6"
                     /gene_synonym="Snat6"
                     /inference="alignment:Splign:2.1.0"
     exon            687..752
                     /gene="Slc38a6"
                     /gene_synonym="Snat6"
                     /inference="alignment:Splign:2.1.0"
     exon            753..806
                     /gene="Slc38a6"
                     /gene_synonym="Snat6"
                     /inference="alignment:Splign:2.1.0"
     exon            807..886
                     /gene="Slc38a6"
                     /gene_synonym="Snat6"
                     /inference="alignment:Splign:2.1.0"
     exon            887..987
                     /gene="Slc38a6"
                     /gene_synonym="Snat6"
                     /inference="alignment:Splign:2.1.0"
     exon            988..1112
                     /gene="Slc38a6"
                     /gene_synonym="Snat6"
                     /inference="alignment:Splign:2.1.0"
     exon            1113..1257
                     /gene="Slc38a6"
                     /gene_synonym="Snat6"
                     /inference="alignment:Splign:2.1.0"
     exon            1258..1352
                     /gene="Slc38a6"
                     /gene_synonym="Snat6"
                     /inference="alignment:Splign:2.1.0"
     exon            1353..2318
                     /gene="Slc38a6"
                     /gene_synonym="Snat6"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcgcttgggg ctaggggaag cgactcgctg atttactagg cagtcggtcg cgaagtacca
       61 tgcaggcgtc ccggtacagt atagaagccg agcctggctg gtacgtatct gtccagcagc
      121 cggaggaggc ggtggctgca gaagagtgga gtccgttgct aagcaacgaa cctcgcagac
      181 agggatcctc tggtgcttca tttggtctct ccgtctttaa tgtgatgaac gccatcatgg
      241 gaagtggcat ccttggcttg gcttatgtga tggctaacac gggtatcctt ggatttagtt
      301 tcctgctgct cttagttgct ctcctggctt cttactcagt ccatctcctg ctggctatgt
      361 gcatccacac agctgtgacg tcttacgaag atcttggact cttcgccttt ggattacctg
      421 gaaaggtggt ggtggcaggc accataataa ttcagaatat tggagctatg tcatcttacc
      481 ttttaattat taaaacagag cttcctgctg ctatttcaga agttttgcct agtgaccaca
      541 gtggggcttg gtatcttgat ggacagatgc tgctaatcat aatctgtgtc ggcattgtgt
      601 tccctctctc actgctcccc aaaataggct ttcttggcta cacaagcagt ctatcatttt
      661 tctttatggt gttctttgct cttgtggtag taattaaaaa atgggccgtt ccttgtcctc
      721 tgaccttaaa ttgcatcaat gcagtctttc agatttcaaa cgctacagat gactgtaaac
      781 caaagctctt tcatttctcc aaagagagtg tctacgccat accaacgatg gctttttcat
      841 ttctctgcca tacctcagta ttgcccatat actgtgagct tcgaagccct tcaaagaaaa
      901 ggatgcagaa tgtgaccaac acagcaattg cgttgagctt cctggtttac ttcgtgtctg
      961 cactctttgg ctacctcact ttttatgaca aagtggagtc agaattactg caaggttaca
     1021 gtaaatactt gccacatgat gctgctgtca tggctgtgaa gttatgcata ctgtttgctg
     1081 tgcttctgac agtccctcta atccacttcc ctgccagaaa agctttgatg atgatacttt
     1141 tctcaaacta tccattttcc tggatccggc attctctgac cacattagcg ctcaacatca
     1201 tcatcgtttt acttgcaata tatgttcctg acattagaaa tgtatttggt gtagttggcg
     1261 ccagcacatc gacatgcttg atttttgtgt tcccaggatt gttttatctt aaactcagcc
     1321 gagaggattt tctctcatgg aaaaagcttg gggctttgtc cctgctcagc acaggcactg
     1381 tggtcggaag cttcagtcta gtgctcatca ttcttgactg ggtcaacaaa tgaaatcaaa
     1441 tgtttttatt atgaagaatg acttacctct ataaataagg gatcattata gaaggcgcca
     1501 tatatgaaaa ttacactctc aggaaaattg ttaacaggaa cgcaggacag agtatcagtg
     1561 tgaatagagc cattttaatt ttaaccaaaa ttagaaatat tcaaaatact tgaaaaatgc
     1621 acagagtcac tctttgttca ggagttttgt tttctgtgtt ttgttttgtg tttgagacag
     1681 gacctagcag tgtaaaccag gctggccttg aactcgaggt ggttttctgt tgggaattgg
     1741 ttctaatgct ttgtcttaac tcgcctcttc tccaggcctg agggtccctg cccccagctg
     1801 gcttccactg gtaataaaga attgctgtat agccaatggc tggacaggga gacggggcgg
     1861 gacttttaga ttgtgtgggc agaggacaga gggagaggga aagaggaaga gaatctcctg
     1921 actctaggca gaggaatcat atttaagagc tgcagaagaa aattatccag caacgtaggt
     1981 gaaaatggaa tgcaaccctg gggggtaggg ggtggggggt gctgcccaat aggtaacagg
     2041 gcagcaaaga taaaacataa atctagaagg tgttaagcca ggaacactgg agggtaatat
     2101 attatgctag cctcagagag atgcacagcc attgagctag tcaaggcata tcaaagttat
     2161 acatcaaaaa gatgtataca tctttcattt gagaatccag ctcaaagcca aagtgggtta
     2221 gcccatacac cactactaca gactgcctgc tgctgttgcc tgccaagggc tggggttaga
     2281 aactgggcca ccatcctggc acatgcctgg catttgtg
//
