LOCUS       NM_001377019            3120 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus solute carrier family 38, member 11 (Slc38a11),
            mRNA.
ACCESSION   NM_001377019 XM_001055605 XM_342441
VERSION     NM_001377019.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3120)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     INFERRED REFSEQ: This record is predicted by genome sequence
            analysis and is not yet supported by experimental evidence. The
            reference sequence was derived from JAXUCZ010000003.1.
            
            On or before Dec 6, 2019 this sequence version replaced
            XM_342441.8, XM_001055605.6.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643297.11320.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760389 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-265               JAXUCZ010000003.1  70441448-70441712   c
            266-386             JAXUCZ010000003.1  70440903-70441023   c
            387-461             JAXUCZ010000003.1  70438905-70438979   c
            462-596             JAXUCZ010000003.1  70435692-70435826   c
            597-662             JAXUCZ010000003.1  70433972-70434037   c
            663-769             JAXUCZ010000003.1  70432640-70432746   c
            770-849             JAXUCZ010000003.1  70429449-70429528   c
            850-920             JAXUCZ010000003.1  70415864-70415934   c
            921-1082            JAXUCZ010000003.1  70414777-70414938   c
            1083-1195           JAXUCZ010000003.1  70410917-70411029   c
            1196-1327           JAXUCZ010000003.1  70406864-70406995   c
            1328-3120           JAXUCZ010000003.1  70395228-70397020   c
FEATURES             Location/Qualifiers
     source          1..3120
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q21"
     gene            1..3120
                     /gene="Slc38a11"
                     /gene_synonym="RGD1306005"
                     /note="solute carrier family 38, member 11"
                     /db_xref="GeneID:362141"
                     /db_xref="RGD:1306005"
     exon            1..265
                     /gene="Slc38a11"
                     /gene_synonym="RGD1306005"
                     /inference="alignment:Splign:2.1.0"
     CDS             227..1621
                     /gene="Slc38a11"
                     /gene_synonym="RGD1306005"
                     /codon_start=1
                     /product="putative sodium-coupled neutral amino acid
                     transporter 11"
                     /protein_id="NP_001363948.1"
                     /db_xref="GeneID:362141"
                     /db_xref="RGD:1306005"
                     /translation="MSYQQPQLRGPLQRETDPSDRESLVSGHEHGGKSSQSAAVFNVV
                     NSVIGSGIIGLPYSMKQAGFPLGILLLFWVSYITDFSLVLLIKGGALSGTDSYQSLVN
                     KTFGFPGYLLLSTLQFMYPFIAMISYNIITGDTLSKVFQRLPGVDPGSWFISRHFIIV
                     VSTVTCTLPLSLYRDIAKLGKISFISTILTAVILGVVVTRTISLGPNIPKTDNAWVFA
                     RPNAIQAIGVMSFAFICHHNCFLVYGSLEEPTVAKWRRVIHTSILVSVFICVLFATCG
                     YFTFTGFTQGDLFENYCRSDDLVTFGRFCYGITVILTYPIECFVTREVITNVFFGGAL
                     SSVFHVTLTAAIVTAATLISLLIDCLGIVLELNGVLCAAPLIFIIPSACYLKLSEEPR
                     THSDKLMACVMFPVGAVVMVAGFVMAITNPQDCTHGQEMFYCFPDNISLTNISHSPRQ
                     LTAQLSLPNLSIFQ"
     exon            266..386
                     /gene="Slc38a11"
                     /gene_synonym="RGD1306005"
                     /inference="alignment:Splign:2.1.0"
     exon            387..461
                     /gene="Slc38a11"
                     /gene_synonym="RGD1306005"
                     /inference="alignment:Splign:2.1.0"
     exon            462..596
                     /gene="Slc38a11"
                     /gene_synonym="RGD1306005"
                     /inference="alignment:Splign:2.1.0"
     exon            597..662
                     /gene="Slc38a11"
                     /gene_synonym="RGD1306005"
                     /inference="alignment:Splign:2.1.0"
     exon            663..769
                     /gene="Slc38a11"
                     /gene_synonym="RGD1306005"
                     /inference="alignment:Splign:2.1.0"
     exon            770..849
                     /gene="Slc38a11"
                     /gene_synonym="RGD1306005"
                     /inference="alignment:Splign:2.1.0"
     exon            850..920
                     /gene="Slc38a11"
                     /gene_synonym="RGD1306005"
                     /inference="alignment:Splign:2.1.0"
     exon            921..1082
                     /gene="Slc38a11"
                     /gene_synonym="RGD1306005"
                     /inference="alignment:Splign:2.1.0"
     exon            1083..1195
                     /gene="Slc38a11"
                     /gene_synonym="RGD1306005"
                     /inference="alignment:Splign:2.1.0"
     exon            1196..1327
                     /gene="Slc38a11"
                     /gene_synonym="RGD1306005"
                     /inference="alignment:Splign:2.1.0"
     exon            1328..3120
                     /gene="Slc38a11"
                     /gene_synonym="RGD1306005"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggaatctggg caacggggtt ggaaacgtcc tacagcatcc tcaccagcag cagccagcag
       61 ggtgtacccg ccctgtgaag gcggagacct ctgagctgca gcctagcgcc cagagtacgg
      121 ctctctccaa ctctcgggcg aacttgactg caggcaaaac agcaggggag cttggccagg
      181 tgggaccctg cttcccagcc ccagaacttt cttcccttga gcagacatga gctaccagca
      241 gccacagctg aggggtcctc tgcagagaga gacagacccg agtgacagag agagcctggt
      301 ctccggacat gaacacggag ggaaatcgag tcagtctgca gctgttttca atgtagtcaa
      361 ttctgttata ggatctggga taataggatt gccctattca atgaagcaag ccggatttcc
      421 cttgggaata ctgcttttat tctgggtctc atacatcaca gacttttccc tagttttatt
      481 gataaaaggc ggagccctct ctggaacaga ctcctaccag tctttggtta acaagacctt
      541 tggctttcca gggtacttgc tgctctctac cctacagttt atgtaccctt ttatagctat
      601 gataagttac aacataataa ctggagatac tttgagcaaa gtttttcaaa gactcccggg
      661 agttgatcct ggaagttggt ttattagtcg acatttcatt attgtggttt caacggttac
      721 atgtactctg cctttgtcgc tgtaccgtga tatagcaaag cttggaaaga tctccttcat
      781 ctctacgatt ttaacagctg tgattcttgg agtggtagtg acaagaacca tttccttggg
      841 gccaaacata ccaaagacag acaatgcttg ggtgtttgca aggcccaatg ccatccaggc
      901 tattggggtg atgtcttttg cgttcatctg ccaccataac tgcttcctag tgtatgggtc
      961 tttagaagag cccacagtgg ccaagtggcg gcgggtcatc cacacgtcca tcttggtttc
     1021 tgtgttcatc tgtgtgctct ttgctacgtg tgggtacttc acttttactg gcttcactca
     1081 aggagacttg tttgaaaatt actgcagaag tgatgacctg gtgacctttg ggaggttttg
     1141 ttacggcatc actgttattt tgacttaccc aattgaatgc tttgtgacca gagaggttat
     1201 taccaatgtg ttttttggtg gggccctttc atcggtattc cacgtcacct taacagcggc
     1261 tattgttact gcagccacac tgatatcgtt gctgattgat tgccttggga tagttttgga
     1321 actcaatggt gtgctctgcg cggctccttt gatttttatc atcccctcag catgctatct
     1381 gaaattatca gaagaaccaa gaacgcactc agataagtta atggcctgtg tcatgtttcc
     1441 cgtcggtgct gtggtgatgg tggcagggtt cgtcatggct atcacaaatc ctcaggactg
     1501 cacccacggg caggaaatgt tctactgttt tcctgacaac atctccctca caaacatctc
     1561 ccattctcct cgtcaactga cagcacagct ttcccttccg aacctcagca tctttcagtg
     1621 agctggctgc tttaaaaagc atgcacgtat gcttgtctct ttgtcacaaa atgaccagtg
     1681 atgcgtgtca agacttgctt gtccttactc tttatggtaa tataaaaata taaaaaattg
     1741 aatatatatt tgatcttaaa ctaggacaga catcttttta attaagatta attaattaat
     1801 taagaaggac cagtgaaggc ataagtacct gctttcagcc ccacaactat taatattatc
     1861 ttgtatggga gccactgttt tgtgctccca aataagtgag taagtatggg ttagaactag
     1921 ggtgtgggct tcttcaggaa aaacaaaagg cttaagtgtt tatagaatcg aagggagagg
     1981 ggaacacaag ccttctaaag gatagctacc ccaggagcaa agagaaggtc tctattttaa
     2041 cttagggagc atcccttgtg gagggggaag tggatgtctg gatgaaaagg caacaccatc
     2101 cctgattagg aagcacacat agaaagctgg atgggcagag aaagctctgt gtgggataac
     2161 aaaattatct gtaggctttt gcagttgtgg gaatttgatg aacgagctat tttaaaacag
     2221 aaacacacat cctttttctg aggcattagc ctaacacatc agttacattt ctgatccgga
     2281 ctggctgaga ccatacagca cggcaggagc tgaacctaga gactaaaagc ttaccctgaa
     2341 tctggcattc ccaatggaac agacattctc cctgtcccgg gccctctggg aacagttggg
     2401 agtcttgtag acgagggcgg cttgcttgct tgctttgttt agggaatgtt tgcttggatt
     2461 ggtttggttt ttcagacagt ttcttactgt gcaatcctga ctggtctgga actatgtaga
     2521 ccaggctagc tttgaactca tggtgatctg cctgtggatt cctcctgaga gtgctggggt
     2581 taaaggcatg agaacatcat gggggaatga ctgggtagcg ggtgctaacc tggaggtgtc
     2641 atacagggta ttgactggga attctaagta gcagcagaga gggaaggaat cagaactgaa
     2701 gatgagaagc agaactctta atatggaggg tggccctgct aagccacaga gctggcccca
     2761 ttctgagtac ttagtgaatg ttccagctgc tgcctccctc ttgagtgcct gacagttgtt
     2821 tgcagtcaag caaacagtaa agaggtaaga gtcagaggct gggcatttat aacatttact
     2881 gttagatata cctgggagga acagctatgc ctactacagg caacctccga tttgagtaag
     2941 gatttcatgt cttcaaatct tttaaaatct gtaacaggat caactcaata gtttccttat
     3001 atcaagtacc accaagatgg taattacctt tttatctgtg cttcagtcag tttgggccat
     3061 cctgatgcta attatgagac aatatcaaaa gcagagcgaa tgcaggcata tttttaaaaa
//
