LOCUS       NM_001376915            4667 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus solute carrier family 38, member 10 (Slc38a10),
            mRNA.
ACCESSION   NM_001376915 XM_006220972 XM_006247945
VERSION     NM_001376915.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4667)
  AUTHORS   Tripathi,R., Hosseini,K., Arapi,V., Fredriksson,R. and Bagchi,S.
  TITLE     SLC38A10 (SNAT10) is Located in ER and Golgi Compartments and Has a
            Role in Regulating Nascent Protein Synthesis
  JOURNAL   Int J Mol Sci 20 (24), 6265 (2019)
   PUBMED   31842320
  REMARK    GeneRIF: we have shown that SNAT10 expression is found in most
            neurons of the mouse brain. It has a unique intracellular
            localization in several cell lines, strongly suggesting expression
            in the Golgi. Silencing the expression of SNAT10 in PC12 cells
            resulted in the reduction of nascent protein synthesis, suggesting
            that SNAT10 might function as a transceptor.
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4667)
  AUTHORS   Bassett,J.H., Gogakos,A., White,J.K., Evans,H., Jacques,R.M., van
            der Spek,A.H., Ramirez-Solis,R., Ryder,E., Sunter,D., Boyde,A.,
            Campbell,M.J., Croucher,P.I. and Williams,G.R.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Rapid-throughput skeletal phenotyping of 100 knockout mice
            identifies 9 new genes that determine bone strength
  JOURNAL   PLoS Genet 8 (8), e1002858 (2012)
   PUBMED   22876197
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000010.1.
            
            On or before Nov 27, 2019 this sequence version replaced
            XM_006247945.2, XM_006220972.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360186.2544897.1,
                                           SRR26643298.65571.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760476,
                                           SAMN12840107 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-367               JAXUCZ010000010.1  105934677-105935043 c
            368-485             JAXUCZ010000010.1  105931303-105931420 c
            486-531             JAXUCZ010000010.1  105925007-105925052 c
            532-625             JAXUCZ010000010.1  105924043-105924136 c
            626-769             JAXUCZ010000010.1  105922278-105922421 c
            770-894             JAXUCZ010000010.1  105921057-105921181 c
            895-997             JAXUCZ010000010.1  105917553-105917655 c
            998-1180            JAXUCZ010000010.1  105915350-105915532 c
            1181-1292           JAXUCZ010000010.1  105912335-105912446 c
            1293-1399           JAXUCZ010000010.1  105911689-105911795 c
            1400-1556           JAXUCZ010000010.1  105898166-105898322 c
            1557-1724           JAXUCZ010000010.1  105892771-105892938 c
            1725-2192           JAXUCZ010000010.1  105892008-105892475 c
            2193-2297           JAXUCZ010000010.1  105891396-105891500 c
            2298-2474           JAXUCZ010000010.1  105888077-105888253 c
            2475-4667           JAXUCZ010000010.1  105885250-105887442 c
FEATURES             Location/Qualifiers
     source          1..4667
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q32.3"
     gene            1..4667
                     /gene="Slc38a10"
                     /gene_synonym="RGD1306356"
                     /note="solute carrier family 38, member 10"
                     /db_xref="GeneID:303740"
                     /db_xref="RGD:1306356"
     exon            1..367
                     /gene="Slc38a10"
                     /gene_synonym="RGD1306356"
                     /inference="alignment:Splign:2.1.0"
     CDS             269..3565
                     /gene="Slc38a10"
                     /gene_synonym="RGD1306356"
                     /note="putative sodium-coupled neutral amino acid
                     transporter 10; amino acid transporter SLC38A10"
                     /codon_start=1
                     /product="solute carrier family 38 member 10"
                     /protein_id="NP_001363844.1"
                     /db_xref="GeneID:303740"
                     /db_xref="RGD:1306356"
                     /translation="MTAASTSKWGLVTNVVNSIVGVSVLTMPFCFKQCGIVLGALLLV
                     FCSWMTHQSCMFLVKSASLSKRRTYAGLAFHAYGKAGKMLVETSMIGLMLGSCITFYV
                     VIGDLGSNFFAPLLGLQVTRTFRVFLLFAVSLCIVLPLSLQRNMMASIQSFSAMALLF
                     YTVFMFVIVLSSFKHGLFSGQWLQRVSYIRWEGVFRCVPIFGMSFACQSQVLPTYDSL
                     DEPSVKTMSSIFASSLNVVTAFYVMVGFFGYVSFTDATTGNVLIHFPSNLVTEMIRVG
                     FVMSVAVGFPMMILPCRQALNTLLFEQQQKDGTFAAGGYMPPLRFKVLTLSVVFGTMV
                     GGVMIPNVETILGFTGATMGSLICFICPALIYKKAHKNAPSAQVVLWVGLGILVVSTL
                     TTLSVSEEAPLDLTQGARSGQRGDAEGAMKVEAARLSVQDPVVVMAEDSQEKLKPAED
                     KEVLEQAQIKGPVDVPGGDTPKEKQEAAQLDRPGQGIAVPMGEAHRHEPPIPHDKVVV
                     DEGQDQEGPEEKKPPPKLPDEGDPAGRGQGAPLLPESEKKQDPERGEEGKRPEQVLAV
                     GEIERPQKIPEANGQPPVQPRKEDSRPGNRDLHPVPQARVSVELNDLVAGEGKESAQK
                     AGGAPWKPMESAVESNIGGKAGLAVQRPEAAEQREKNEAEQPGGDQAGSKLEEAGRAE
                     MLDHAVLLQVIKEQQVQQKRLLDQQEKLLAVIEEQHKEIRQQRQEGEEDKPKPDMQPE
                     PGAAVLRGQEEEAEHAGAPDEHAGETLEDNPSQPLQPVLGAPRGHPAPSQDKGQHPLE
                     EVKVLAGRDLADLPAGGSDTEPHGASSKLREDQKGAALKVAEAVRKLVPGDLEPVHKP
                     DPAEVPKSPEKQLAKEVARQRQDVFGEGSQERKETGKDAVAPGADTQKEAAQPLVGAE
                     AEDSHSKSRHSEPTKVPASGPAGMGFQAQARFRQEPQVIFDKSQDSHPEVRSEGPRGV
                     GIPAEEQHRGRGAAAMQEEKQRPDPNSGPKLAVPGDQKPENAKPNRDLKVQAGSDLRR
                     RRRDLASPPEQELAPKDGVIISFNSLPNVQVNDLRSALDTQLRQAAGAALQVVHSRQI
                     KQLSGDLEEA"
     exon            368..485
                     /gene="Slc38a10"
                     /gene_synonym="RGD1306356"
                     /inference="alignment:Splign:2.1.0"
     exon            486..531
                     /gene="Slc38a10"
                     /gene_synonym="RGD1306356"
                     /inference="alignment:Splign:2.1.0"
     exon            532..625
                     /gene="Slc38a10"
                     /gene_synonym="RGD1306356"
                     /inference="alignment:Splign:2.1.0"
     exon            626..769
                     /gene="Slc38a10"
                     /gene_synonym="RGD1306356"
                     /inference="alignment:Splign:2.1.0"
     exon            770..894
                     /gene="Slc38a10"
                     /gene_synonym="RGD1306356"
                     /inference="alignment:Splign:2.1.0"
     exon            895..997
                     /gene="Slc38a10"
                     /gene_synonym="RGD1306356"
                     /inference="alignment:Splign:2.1.0"
     exon            998..1180
                     /gene="Slc38a10"
                     /gene_synonym="RGD1306356"
                     /inference="alignment:Splign:2.1.0"
     exon            1181..1292
                     /gene="Slc38a10"
                     /gene_synonym="RGD1306356"
                     /inference="alignment:Splign:2.1.0"
     exon            1293..1399
                     /gene="Slc38a10"
                     /gene_synonym="RGD1306356"
                     /inference="alignment:Splign:2.1.0"
     exon            1400..1556
                     /gene="Slc38a10"
                     /gene_synonym="RGD1306356"
                     /inference="alignment:Splign:2.1.0"
     exon            1557..1724
                     /gene="Slc38a10"
                     /gene_synonym="RGD1306356"
                     /inference="alignment:Splign:2.1.0"
     exon            1725..2192
                     /gene="Slc38a10"
                     /gene_synonym="RGD1306356"
                     /inference="alignment:Splign:2.1.0"
     exon            2193..2297
                     /gene="Slc38a10"
                     /gene_synonym="RGD1306356"
                     /inference="alignment:Splign:2.1.0"
     exon            2298..2474
                     /gene="Slc38a10"
                     /gene_synonym="RGD1306356"
                     /inference="alignment:Splign:2.1.0"
     exon            2475..4667
                     /gene="Slc38a10"
                     /gene_synonym="RGD1306356"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cttcctggca gagtacactc cgaaggcgga agtttgtgtg ccggaggcag cgaagcggag
       61 ctgaggtgtt gctagcgttg cctgcggcgc ttccgggtcc ctgctccact ctcgggaggc
      121 ggaggcggga acctgaaacc atggctgtga ggctgctgcg gagtctgaca gggtccggag
      181 gctgattttg cgacgcctgt ctgcgggtcc cctgatcccg gtttagggtt atctagggtc
      241 gcgccgtccc ggcccctaga ccctcaaaat gaccgccgcc tccacctcca agtgggggct
      301 ggtcacgaac gtcgtaaaca gcatagtggg ggtcagcgta ctcaccatgc ctttctgctt
      361 caaacagtgt ggcattgtcc tgggggccct gctcctggtc ttctgctcct ggatgacgca
      421 ccagtcttgc atgttcttgg tgaagtcggc cagcttgagc aagaggagaa cctatgccgg
      481 cctggcattc cacgcctacg gcaaggctgg gaagatgctg gtggagacca gcatgattgg
      541 gctgatgctg ggatcctgca ttaccttcta tgtcgtgatt ggtgacttgg ggtccaactt
      601 ctttgctccg ctgcttggat tacaggtaac caggaccttc cgtgtattcc tgctctttgc
      661 agtatccctg tgcatcgtcc tcccactcag cctgcagaga aacatgatgg cctccatcca
      721 gtccttcagt gccatggcac tcctcttcta cactgtcttc atgtttgtga ttgtgctgtc
      781 ctcttttaag catggcctct ttagtgggca gtggctgcag cgggtcagct acattcgctg
      841 ggaaggcgtt ttccgctgtg tccccatctt tggcatgtcc tttgcctgtc agtcccaggt
      901 cctgcccacc tacgacagcc tggatgagcc atcagtgaag accatgagtt ccatatttgc
      961 ctcctccctc aacgtggtca ccgccttcta tgtcatggtg gggttttttg gttacgtcag
     1021 cttcactgat gccaccacag gcaacgtgct gatacacttc ccctccaacc tggtgacaga
     1081 gatgatccga gtgggctttg tgatgtctgt ggctgtcggc ttccccatga tgattctgcc
     1141 ctgcagacag gccttgaaca cactgctatt tgagcagcag caaaaagacg gaacctttgc
     1201 tgcaggaggg tacatgcccc cactccggtt taaagtcctc accctctcgg tggtgttcgg
     1261 aaccatggtc ggtggcgtca tgatccccaa tgtggaaacc atccttggct tcacaggagc
     1321 aacgatgggg agcctcatct gcttcatctg cccggctctg atctataaga aagcccacaa
     1381 gaatgccccc tcagcccagg tggtgctctg ggtcggcctg ggcatcctag tggtcagcac
     1441 actcaccacc ctgtctgtga gcgaagaagc tcctctggac ttgacgcaag gagctcgcag
     1501 cggccagcga ggagatgccg agggcgcgat gaaggtggag gcagcccggc tatcagtcca
     1561 ggatcccgtt gtagtcatgg ctgaggatag ccaagagaag ctaaagccag cagaggacaa
     1621 agaggtcctg gagcaggccc agattaaggg gccagtggat gtgcctggag gggacactcc
     1681 caaggagaag caggaagctg cacagctgga tcgcccaggt caaggtattg ctgtccctat
     1741 gggcgaggcc catcgccacg agcctcccat ccctcatgat aaagtggtgg tggatgaagg
     1801 ccaggaccaa gaagggccag aggagaaaaa gccacctccc aagctcccag atgaaggaga
     1861 ccctgcaggc agggggcagg gggcaccact tctgcctgag tcagagaaga agcaggaccc
     1921 tgagagggga gaggaaggaa agagacctga gcaagtcctg gcagtagggg aaattgaacg
     1981 tcctcagaag attccagaag caaatggtca gccacctgtc cagcctagga aggaagattc
     2041 cagaccagga aatagggatc tgcatccagt tccccaggcc agggtctctg tggagctgaa
     2101 tgatctggtg gcaggtgaag gcaaggagtc tgcacagaag gctggagggg ccccgtggaa
     2161 gcccatggag agtgccgtgg agagcaatat tggtgggaag gcgggcctcg ctgtacaaag
     2221 gccggaggct gcagagcaga gggagaagaa cgaggctgag caaccgggtg gagaccaagc
     2281 agggagcaag ttggaagaag ctgggagggc agagatgctg gaccatgctg tactgctaca
     2341 ggtgatcaaa gagcagcagg ttcagcagaa gcgcctcttg gaccagcagg agaagctgct
     2401 tgcagtgatt gaggagcagc acaaggagat ccggcagcag cgacaggagg gtgaggagga
     2461 caagcctaag cctgacatgc agccagagcc tggggcggct gtactcagag gacaggaaga
     2521 ggaggctgag catgctgggg ccccagatga gcatgctggg gagacactgg aagataaccc
     2581 ttcacagcct ttgcaacctg tgcttggagc tcctaggggt caccctgctc catcccaaga
     2641 caagggccag caccctctgg aggaagtcaa ggtactggca ggcagagacc ttgctgacct
     2701 tcctgctggt ggttctgaca cagagcccca tggggcttca agtaagctga gagaagacca
     2761 aaaaggtgct gccctcaagg tggctgaagc tgtgaggaag ctggtcccag gggacttgga
     2821 accagtgcac aagccagacc ctgctgaggt gcccaagagt ccagagaagc agcttgccaa
     2881 ggaggttgcc aggcagcgcc aagatgtctt tggtgaaggt tcccaagaaa ggaaggaaac
     2941 tggaaaggat gcagtggccc ctggtgctga tactcagaaa gaggctgccc agcctttagt
     3001 gggggcagaa gctgaggact ctcactcaaa atccaggcac tcagaaccca ccaaggtccc
     3061 agctagtggg ccagcaggta tgggctttca ggcccaagcc aggtttcggc aagaacccca
     3121 ggtcatcttt gacaaaagtc aggattctca cccagaggta agaagtgagg gcccccgagg
     3181 ggttggcatc cctgctgagg agcagcacag aggaagaggg gctgccgcta tgcaagagga
     3241 aaagcagaga ccagatccga attctgggcc caaactagct gtgcctgggg atcagaagcc
     3301 tgagaatgcc aaacctaaca gagacctgaa agtgcaggct ggctctgacc tgcggaggag
     3361 acggcgggat ctcgcctctc ctccagagca ggagctggct ccaaaggatg gagtcatcat
     3421 tagctttaac tccctcccta acgtacaggt gaacgacctc cgcagtgctc tggacaccca
     3481 gctccgccag gctgcagggg ccgcattaca ggtggtgcac agccggcaga ttaaacagtt
     3541 gtctggagac ctggaggaag cctgagaacc tggtcagggg aaggctgctg ctagacattg
     3601 gacggcaggc agccggtgtc ctctggcgac accctgactg gaggccatgt tgttatgttc
     3661 ccaagtcctt catgatgaat tgcgaaagtc taccctgcca cccaacccta ggcatctgtc
     3721 cctctgtggc ttcacttgcc ccaaggccac accaaagcac gcactggccc tagtatggtg
     3781 ggtcttgaac cagcccagga gaagcagtgc tacatacagt tcagctccag tgatgcactg
     3841 cggcacctcg gctgttcaga ctcagtctgg cagtgctgac agcaaggcag gcaactttga
     3901 agttgccagt cttcatctaa cttgcaacct gtgacagcca gattccactg actagataaa
     3961 ttccatgttc tccatagaag gaaacctgca tcagggatgt ctgtctgcct tggggtgggt
     4021 aggacttgac ttgggttggg aaaggaggca cacagccctc ctggttttta tcatccacat
     4081 tctttgaacc tgattatgaa gcaaaaaata aaacaccact aacaagtagt gagtcaagtt
     4141 ggtttaccta aaggaaaaca cattcaggat cctggatgat accaaaccag ctagaggcta
     4201 gaggtcatgg ggatacacgc cccagccgtc ttcctgaacc agctgagtgc tgctggggaa
     4261 gcaacaggca acaggccccc gtgctgatcc ctgttgtagg gaggggttgg acaatgagca
     4321 caggcttgcc accagcaagc cctgggatgt atctacacgg ctttaggctc agagtagagc
     4381 tgccctctgt ccaactgcag ctgtcagggt agtgtcctgg gagtcagagc aggaagtcat
     4441 gactgttgtc tttgagcaga gaatacttga tatgttttgt cactcactcc cttgcccagt
     4501 aaggagactg agggacaaca gcctggtttg tccccaagcc ctgccgtgaa gggcctggaa
     4561 gcaccaggag cctcagtgga atcatacttg gaccaggcca caccctattg tgtacctgct
     4621 gcacctcttg aaatgtattt tattacagtt tatttttttt taattta
//
