LOCUS       NM_001395734            2617 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus solute carrier family 35, member F2 (Slc35f2),
            transcript variant 1, mRNA.
ACCESSION   NM_001395734 XM_006243069
VERSION     NM_001395734.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2617)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000008.1.
            
            On Aug 3, 2021 this sequence version replaced XM_006243069.4.
            
            Transcript Variant: This variant (1) represents the longer
            transcript and encodes the longer isoform (1).
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643293.45274.1,
                                           SRR26643288.33752.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-358               JAXUCZ010000008.1  63056153-63056510
            359-534             JAXUCZ010000008.1  63083629-63083804
            535-662             JAXUCZ010000008.1  63086931-63087058
            663-822             JAXUCZ010000008.1  63091018-63091177
            823-979             JAXUCZ010000008.1  63092380-63092536
            980-1032            JAXUCZ010000008.1  63093675-63093727
            1033-1187           JAXUCZ010000008.1  63094881-63095035
            1188-2617           JAXUCZ010000008.1  63098362-63099791
FEATURES             Location/Qualifiers
     source          1..2617
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q24"
     gene            1..2617
                     /gene="Slc35f2"
                     /note="solute carrier family 35, member F2"
                     /db_xref="GeneID:300713"
                     /db_xref="RGD:1311242"
     exon            1..358
                     /gene="Slc35f2"
                     /inference="alignment:Splign:2.1.0"
     CDS             249..1376
                     /gene="Slc35f2"
                     /note="isoform 1 is encoded by transcript variant 1"
                     /codon_start=1
                     /product="solute carrier family 35 member F2 isoform 1"
                     /protein_id="NP_001382663.1"
                     /db_xref="GeneID:300713"
                     /db_xref="RGD:1311242"
                     /translation="MEAESPASTRASEPRALGTVGSIGSQLSRIRGKLFTWDILKTIA
                     LGQMLSLCICGTAITSQYLAEKYRVNTPMLQSFINYCLLFLVYTVMLAFQSGSDNLLE
                     ILRRKWWKYTLLGLADVEANYLIVRAYQYTTLTSVQLLDCFGIPVLMALSWFILRARY
                     KVIHFIAVFVCLLGVGTMVGADILAGREDNSGSDVLIGDILVLLGASLYAVSNVCEEY
                     IVKKLSRQEFLGMVGLFGTIISGIQLLIVEYKDIARIQWDWKIALLFVAFALCMFCLY
                     SFMPLVMKVTSATSVNLGILTADLYSLFFGLFLFEYKFSGLYILSFTVIMVGFILYCS
                     TPTRTAEPAESSVPPVTSIGIDNLGLKLEESGLSETHSAVL"
     exon            359..534
                     /gene="Slc35f2"
                     /inference="alignment:Splign:2.1.0"
     exon            535..662
                     /gene="Slc35f2"
                     /inference="alignment:Splign:2.1.0"
     exon            663..822
                     /gene="Slc35f2"
                     /inference="alignment:Splign:2.1.0"
     exon            823..979
                     /gene="Slc35f2"
                     /inference="alignment:Splign:2.1.0"
     exon            980..1032
                     /gene="Slc35f2"
                     /inference="alignment:Splign:2.1.0"
     exon            1033..1187
                     /gene="Slc35f2"
                     /inference="alignment:Splign:2.1.0"
     exon            1188..2617
                     /gene="Slc35f2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agcttcccaa aggtgccagg tggcgatctg caaaagcatt gtctggcttt aagggcttga
       61 cagttaacga tttgtcgcaa gagctgggcg gaggagtacc gggacctagg cgagcgtact
      121 agcgagcgca gcaggagagc aaggcagggc gcgagccgag tccgcgctat cctcacaggc
      181 accgcctcct gtcttccggg ccccagcact tctccgggtt ccggacacgc gaggctcgta
      241 gggaccccat ggaggctgag tcgcccgcta gcacgagggc cagcgagccc cgggcgctgg
      301 ggacggtggg cagtatcggc agccaactga gcaggatccg aggcaaactc ttcacctggg
      361 atattttgaa gaccatagcc ctgggccaga tgctgtcctt gtgtatttgt ggcacagcca
      421 tcaccagcca gtatttggca gaaaagtaca gagtgaacac gcccatgctt cagagtttca
      481 tcaactactg cttgctcttc ctggtttaca ccgtgatgct ggcgtttcaa tcgggcagtg
      541 ataaccttct ggagattttg agaagaaaat ggtggaagta tactctcctg gggcttgccg
      601 atgtggaagc caattatctg atcgtcagag cgtaccagta cacgactctg accagtgtcc
      661 agctcttgga ttgctttggg atccctgtgt tgatggctct ctcctggttt attctccggg
      721 caagatacaa agtgatccac ttcattgccg tgtttgtctg tctgctgggt gtagggacca
      781 tggttggcgc agacatatta gccgggcgag aggataattc agggagtgac gttcttatcg
      841 gtgacatcct ggtcctgctt ggggcttccc tgtacgctgt gtctaacgtg tgtgaagagt
      901 acatcgtgaa gaagctgagc agacaggaat ttttaggaat ggtgggacta tttggaacaa
      961 tcatcagtgg cattcagcta ttgattgtgg aatataaaga cattgcccgg attcaatggg
     1021 actggaaaat tgccctgctg tttgtggcgt tcgccctctg tatgttctgc ctgtacagct
     1081 tcatgccatt ggtgatgaaa gtcactagtg ccacttcagt caacctgggc atcctgacgg
     1141 ctgacctcta cagccttttc tttgggcttt tcctattcga gtataagttc tcaggactct
     1201 acatcctgtc attcacagtc atcatggtag gcttcatctt gtactgttcc accccaacac
     1261 gcacagcaga gccagcagaa agcagcgtac cccccgtcac cagcatcggg atcgacaatc
     1321 tgggactgaa gcttgaggag agtggtctct cagagaccca ctctgcagtc ttgtagctgg
     1381 acaagccaca gactccagcg agcatgccac cgggagagag tagagcctgc cactgccaag
     1441 ggcctatctg aggggacatc agcctcagag ggaaagccca ctgtattgga ttacatcagt
     1501 ggttagatgg tagaaaggaa cgctgatcag tgattccaaa ctagaaatac caaagcagag
     1561 cagagagtcc gagggcagtg tttctgtgtg ttgagtgcca gttcttgtca ccgtcagaga
     1621 gaccagtgca aggccccttg ctggggtctc agagacacat ataagaagag aaggaaggat
     1681 gggggacctg cttcagggct gtttaggtag ttaggagttg ggacagtctg ggatggttgt
     1741 gcaataagat tcctctgttg gaagcctcac atttttgttc tgcgggggca gtcactataa
     1801 gtatgagcct tatggaattt agacacccac tggctgcttc cttggtggca ggtggtgcgg
     1861 aaaatgggcg tggcagcact cgagaactcc caagataaac tgtgactact ttgaaagcag
     1921 ctaatgagta caggaatcct ctcccagttg tgttctttga tgtcttataa caagtcccgc
     1981 ccgtctgtcc tctttctcct ccctagccac gtttgctcct gtgttctgag ttccagaaca
     2041 aactgctctc aacgcctgtt acattgggca tcccacattc agccccacac tacatcctga
     2101 aagttctccc aagcaaatac actcctgtta cccttttaaa aatgtccctg gtgcccagga
     2161 atagtcatcc ccattgtcct tacctcgcta agccacagtt tagagaattt acctgctgca
     2221 agttctccta gcaggacaag agcttgagaa gttggttgct gtctctggtt gggaaaaaaa
     2281 aaagcattat cattaaaatg gaaacaaaat gctaatcatt tcccatggaa gaaaggagca
     2341 gtgagcagtg gttccaaacc agaaacacta aagtaggtcg gtgctgggct tctggaatcc
     2401 tgactgagag gagagtgtct tccttgttta caccagttta tgatgctcgt gggtttctga
     2461 cacttccgca gcacggcgtg aacatgcagc ttcagcataa tgtcagccac caggatgtca
     2521 cctttagaaa actctatgta aatggttttt gtataggtat aataaagaaa tttggggtaa
     2581 gtgttcatat tattaaaaga ctttaaactc atggaaa
//
