LOCUS       NM_001106098            1560 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus solute carrier family 35 member D2 (Slc35d2),
            mRNA.
ACCESSION   NM_001106098 XM_001059113 XM_214408
VERSION     NM_001106098.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1560)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000017.1.
            
            On Dec 17, 2009 this sequence version replaced NM_001106098.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643285.47958.1,
                                           SRR26643295.53474.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760400, SAMEA5760433
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-170               JAXUCZ010000017.1  993918-994087
            171-204             JAXUCZ010000017.1  1000667-1000700
            205-291             JAXUCZ010000017.1  1002937-1003023
            292-359             JAXUCZ010000017.1  1004999-1005066
            360-431             JAXUCZ010000017.1  1007965-1008036
            432-499             JAXUCZ010000017.1  1009138-1009205
            500-602             JAXUCZ010000017.1  1013475-1013577
            603-694             JAXUCZ010000017.1  1014839-1014930
            695-761             JAXUCZ010000017.1  1016800-1016866
            762-763             JAXUCZ010000017.1  1022714-1022715
            764-840             JAXUCZ010000017.1  1022716-1022792
            841-923             JAXUCZ010000017.1  1023689-1023771
            924-1557            JAXUCZ010000017.1  1024400-1025033
FEATURES             Location/Qualifiers
     source          1..1560
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="17"
                     /map="17p14"
     gene            1..1560
                     /gene="Slc35d2"
                     /note="solute carrier family 35 member D2"
                     /db_xref="GeneID:290959"
                     /db_xref="RGD:1309518"
     exon            1..170
                     /gene="Slc35d2"
                     /inference="alignment:Splign:2.1.0"
     CDS             49..1029
                     /gene="Slc35d2"
                     /note="UDP-N-acetylglucosamine/UDP-glucose/GDP-mannose
                     transporter; solute carrier family 35
                     (UDP-GlcNAc/UDP-glucose transporter), member D2"
                     /codon_start=1
                     /product="nucleotide sugar transporter SLC35D2"
                     /protein_id="NP_001099568.2"
                     /db_xref="GeneID:290959"
                     /db_xref="RGD:1309518"
                     /translation="MEEPDAARLPSRLARLLSALFYGTCSFLIVLVNKALLTTYGFPS
                     PIVLGIGQMTTTIMILYVSKLNKIIHFPDFDKKIPGKLFPLPLLYVGNHISGLSSTSK
                     LSLPMFTVLRKFTIPLTLLLEAIILGKQYSLSIILSVLAIVLGAFIAAGSDLTFNWEG
                     YVFVFLNDIFTAANGVYTKQKMDPKELGKYGVLFYNACFMLIPTVIISVSTGDFQQAT
                     EFSHWKNVLFIVQFLLSCLLGFLLMYSTALCSYYNSALTTAVVGAIKNVSVAYIGMLV
                     GGDYIFSLLNFIGLNICMAGGLRYSFLTLSSQSKPKQPVDEESLPLDLKS"
     exon            171..204
                     /gene="Slc35d2"
                     /inference="alignment:Splign:2.1.0"
     exon            205..291
                     /gene="Slc35d2"
                     /inference="alignment:Splign:2.1.0"
     exon            292..359
                     /gene="Slc35d2"
                     /inference="alignment:Splign:2.1.0"
     exon            360..431
                     /gene="Slc35d2"
                     /inference="alignment:Splign:2.1.0"
     exon            432..500
                     /gene="Slc35d2"
                     /inference="alignment:Splign:2.1.0"
     exon            501..603
                     /gene="Slc35d2"
                     /inference="alignment:Splign:2.1.0"
     exon            604..696
                     /gene="Slc35d2"
                     /inference="alignment:Splign:2.1.0"
     exon            697..764
                     /gene="Slc35d2"
                     /inference="alignment:Splign:2.1.0"
     exon            765..843
                     /gene="Slc35d2"
                     /inference="alignment:Splign:2.1.0"
     exon            844..926
                     /gene="Slc35d2"
                     /inference="alignment:Splign:2.1.0"
     exon            927..1560
                     /gene="Slc35d2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gggggcggga ccgcgggctg ggttagggct ggtcggcgga gggcagagat ggaggagccc
       61 gacgcggcgc ggctgccctc tcgcctggcc aggctgctat cggcgctctt ctacgggaca
      121 tgctccttcc tcatcgtgct ggtcaacaag gcgctgctga ccacatatgg ttttccctca
      181 ccaattgttc ttggaattgg acagatgact accaccataa tgatactgta tgtgtccaag
      241 ctaaataaaa taatccactt ccctgatttt gacaagaaaa ttcctggaaa gctgttccct
      301 ctgcctcttc tctacgttgg aaaccacata agtggcttgt caagcacaag taaattaagc
      361 ttgcccatgt tcaccgtgct caggaaattt acaattccac tcactttact cctggaggcc
      421 atcatacttg ggaaacagta ttcgttgagc atcatcctca gtgtcttggc catcgttctt
      481 ggggctttca tagcagccgg ctctgacctc acattcaact gggaaggcta cgtttttgta
      541 ttcttgaatg acatcttcac cgcagcaaac ggagtttata ccaaacagaa gatggacccg
      601 aaggagttgg ggaagtacgg agtgcttttc tacaatgcct gcttcatgct catcccaact
      661 gtcattatta gcgtctctac tggagacttt cagcaggcca ctgaattcag ccactggaag
      721 aatgttttgt ttatcgtaca gtttcttctt tcctgtcttt tggggtttct gctgatgtat
      781 tccacagctc tttgcagtta ttacaactca gctctgacca cggcggtggt tggagcgatc
      841 aagaacgtat cggttgccta cattgggatg ttggttggtg gagactacat tttctccctc
      901 ttaaacttta tagggttaaa tatttgcatg gcaggtggtt taagatactc ctttttaaca
      961 ctaagcagcc agtcgaaacc taaacaacct gtggatgaag aaagcctccc tctggatctg
     1021 aagagctaga ctgcagacag agctgcaggc ctaggctgga aagagcagcc ccagcaggag
     1081 tgggcagccc agaggtccca cccatggggc agtcacctgt ttggtcagag cacaaaaagg
     1141 aatgtctggg aaatacaaag aaagctacct catactgcat aatgagccac aaggaaccca
     1201 taactcctgg tacagaacct tcctatctaa gcgaatttgc tcaaagtcag ccatggggcc
     1261 ctcactgtgt gctgaggaag atatttccaa ggtgactttg cttatcagca ccatggcctt
     1321 aattttaaag gtcccagcca aggaaaagga gggaaaactt tttgctgttg aaacatgtct
     1381 ttgtaagagt tggtcagttt tgatttatgc tatgttggta tttttttttt cccaagtcat
     1441 cacagtgaaa taaagtcatt tctatatgtg ccacacagta tgatattgca cagaaagtca
     1501 gttgtttggt gtttaaggat atttctgggg atgaagtggg gagagtgctt gctgtactca
//
