LOCUS       NM_001106668            3043 bp    mRNA    linear   ROD 29-MAR-2024
DEFINITION  Rattus norvegicus solute carrier family 35 member D1 (Slc35d1),
            mRNA.
ACCESSION   NM_001106668 XM_001063403 XM_216462
VERSION     NM_001106668.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3043)
  AUTHORS   Hiraoka,S., Furuichi,T., Nishimura,G., Shibata,S., Yanagishita,M.,
            Rimoin,D.L., Superti-Furga,A., Nikkels,P.G., Ogawa,M.,
            Katsuyama,K., Toyoda,H., Kinoshita-Toyoda,A., Ishida,N., Isono,K.,
            Sanai,Y., Cohn,D.H., Koseki,H. and Ikegawa,S.
  TITLE     Nucleotide-sugar transporter SLC35D1 is critical to chondroitin
            sulfate synthesis in cartilage and skeletal development in mouse
            and human
  JOURNAL   Nat Med 13 (11), 1363-1367 (2007)
   PUBMED   17952091
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000005.1.
            
            On Nov 20, 2012 this sequence version replaced NM_001106668.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643289.15649.1,
                                           SRR26643295.21964.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-161               JAXUCZ010000005.1  123209672-123209832 c
            162-195             JAXUCZ010000005.1  123209073-123209106 c
            196-282             JAXUCZ010000005.1  123208886-123208972 c
            283-350             JAXUCZ010000005.1  123208156-123208223 c
            351-422             JAXUCZ010000005.1  123206324-123206395 c
            423-491             JAXUCZ010000005.1  123205493-123205561 c
            492-594             JAXUCZ010000005.1  123203162-123203264 c
            595-687             JAXUCZ010000005.1  123200193-123200285 c
            688-755             JAXUCZ010000005.1  123185279-123185346 c
            756-834             JAXUCZ010000005.1  123184245-123184323 c
            835-917             JAXUCZ010000005.1  123180629-123180711 c
            918-3043            JAXUCZ010000005.1  123163413-123165538 c
FEATURES             Location/Qualifiers
     source          1..3043
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q33"
     gene            1..3043
                     /gene="Slc35d1"
                     /note="solute carrier family 35 member D1"
                     /db_xref="GeneID:298280"
                     /db_xref="RGD:1309843"
     exon            1..161
                     /gene="Slc35d1"
                     /inference="alignment:Splign:2.1.0"
     CDS             49..1026
                     /gene="Slc35d1"
                     /note="solute carrier family 35 (UDP-glucuronic
                     acid/UDP-N-acetylgalactosamine dual transporter), member
                     D1; UDP-glucuronic acid/UDP-N-acetylgalactosamine
                     transporter; solute carrier family 35 (UDP-GlcA/UDP-GalNAc
                     transporter), member D1"
                     /codon_start=1
                     /product="nucleotide sugar transporter SLC35D1"
                     /protein_id="NP_001100138.1"
                     /db_xref="GeneID:298280"
                     /db_xref="RGD:1309843"
                     /translation="MAPAETLTVFLKLLAAGFYGVSSFLIVVVNKSVLTNYRFPSSLC
                     VGLGQMVATVAVLWVGKALRVVKFPDFDRNVPRKTFPLPLLYFGNQITGLFSTKKLNL
                     PMFTVLRRFSILFTMFAEGALLKKTFSWGIKMTVFAMIIGAFIAASSDLAFDLEGYVF
                     ILINDVLTAANGAYVKQKLDSKELGKYGLLYYNALFMILPTLAIAYFTGDAQKAMEFE
                     GWADALFLLQFTLSCVMGFILMYATVLCTQYNSALTTTIVGCIKNILITYIGMVFGGD
                     YIFTWTNFIGLNISIAGSLVYSYITFTEEQLSKQSETSNKLDTKGKGAV"
     exon            162..195
                     /gene="Slc35d1"
                     /inference="alignment:Splign:2.1.0"
     exon            196..282
                     /gene="Slc35d1"
                     /inference="alignment:Splign:2.1.0"
     exon            283..350
                     /gene="Slc35d1"
                     /inference="alignment:Splign:2.1.0"
     exon            351..422
                     /gene="Slc35d1"
                     /inference="alignment:Splign:2.1.0"
     exon            423..491
                     /gene="Slc35d1"
                     /inference="alignment:Splign:2.1.0"
     exon            492..594
                     /gene="Slc35d1"
                     /inference="alignment:Splign:2.1.0"
     exon            595..687
                     /gene="Slc35d1"
                     /inference="alignment:Splign:2.1.0"
     exon            688..755
                     /gene="Slc35d1"
                     /inference="alignment:Splign:2.1.0"
     exon            756..834
                     /gene="Slc35d1"
                     /inference="alignment:Splign:2.1.0"
     exon            835..917
                     /gene="Slc35d1"
                     /inference="alignment:Splign:2.1.0"
     exon            918..3043
                     /gene="Slc35d1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gaagcccccg cgaaatcctc cacacacaga gatgaggagg agctggggat ggcgccggcc
       61 gaaacgctaa cggtgttcct gaagctactg gctgccggtt tctacggcgt gagctccttt
      121 ctcatcgtgg tggtcaacaa gagcgtgctc accaactaca gatttccatc ctcgctatgt
      181 gttggacttg gccagatggt ggccacggta gcagttctct gggtgggaaa ggcactcaga
      241 gtagtcaagt ttcctgactt tgacagaaat gtacctcgaa agacgtttcc actacctctg
      301 ctctatttcg ggaaccaaat cacgggactg ttcagcacaa agaaactgaa cctgcccatg
      361 tttacagtcc tgagaaggtt ctccattctg tttacaatgt ttgctgaagg cgctctactt
      421 aagaagactt tctcttgggg tattaagatg actgtattcg ccatgatcat tggggccttc
      481 atagccgcca gctctgactt ggcctttgat ctggaaggat atgtttttat tttgatcaat
      541 gatgtcctga cagcagcaaa tggtgcatat gtgaaacaga agttagattc gaaagagctg
      601 ggaaaatatg gtctgctcta ttacaatgca ctgttcatga ttctgcccac cctggccatt
      661 gcgtatttca caggagatgc acaaaaggca atggagtttg agggctgggc cgacgccctg
      721 ttcctgctgc agttcaccct ctcctgtgtg atggggttca tcttgatgta tgctacagta
      781 ctctgtactc agtataactc tgctctgacc acaacaatag tcggctgcat taagaatata
      841 ttaataactt atatcggaat ggtctttggt ggagattata ttttcacgtg gacaaatttt
      901 attggcctaa atatcagtat tgctggaagc ctggtgtatt cttacatcac tttcaccgaa
      961 gagcagctga gcaaacagtc agagaccagt aacaagctgg acactaaggg gaaaggagca
     1021 gtatgacctc cacggaccct gaagacactg aggcgttatg attgctggga gttaatattc
     1081 ctttgcagtt gcacaaccct aggattgatt gctgcctttg aaaatttatt attaactatg
     1141 tttgaattaa tttatatcag actgaaaaat gttctgggtg ggttttaatt tatttttctt
     1201 ctctgacagt gaaacaacag tgttttggaa tctttacttt gtagcttgtt atacaggtgg
     1261 ccctggcagt gtataccgtg tgttctgaga tgcgagagat gctttccagt ggtctgtctc
     1321 tggagacagt ttagctggaa atgcagctaa ggttctcctc ctcctcctcc tcatcctcct
     1381 cctcctcctt cctcccctcc tcctcctcct cttttcctcc ctccctcctc ctccctccac
     1441 ctttttgtgg cactgtcttc atagtatcac cacatttgcc aaaggtgaca gctttggcac
     1501 taaaaggccc aagatgctct gatgtgctct gccttcctag actgagcggg tgagcagagc
     1561 gtgccttggc atgtctgacc ctttgttcag ttggagacaa gcaagggtgg aggaagccag
     1621 tcatttactc accgatccag ctgtaatgca ttgaaagtcc ctgtcaggca gtgccgagtg
     1681 cagggaggca gagacgtgtt agtaattcag ccctacaatg aatggaagat ggagaacttg
     1741 gttctctcac aactggaaaa tcctgggact gtgcaccggt tactcagctc tggaactgca
     1801 ggcctttgag attggaagca cctgccttgc cttctccaca gccctgagaa gagcccataa
     1861 gagattgaag agctttactc tgtacaccaa cccagcagcg gctccgcctg acccttcctt
     1921 ctcttaaagg gacagatggt caaggtgact cccttctccc gccccatgcc ctcatcatgt
     1981 ggatgtagtt gccagtctgt attcctgttt gcaggctctc atggcgagac aagggcctcg
     2041 tttccgactg attggtatga gggggctagg tagacatctt tgcattgttg gaactcagtc
     2101 tttctttggc agatctaaat ccctccctct gacgtgacat gaggtcagct ctcccctgca
     2161 gatagataca tccacctgat aagcatctca ggatggaatt atcttctctt cttccctcat
     2221 tctgagagag tccatgggtg gaccttgcct gaactgcctc agggtggagc gattgctgga
     2281 acagggtggt gtggctcaga ggcatggctg gctttggagg gctggcttct gcctcctcga
     2341 tgggccgctg actgcaggcc tttagcttgt attttgtgtc tcagtgggga atagttttaa
     2401 ttttctcccc tctatttgaa attgttcatc tgtaggctcc atcttgcata taacttgtaa
     2461 gaaagacatt tgcaagtttt ctgtaatctt gtatcaggaa tatgtgggag gtttggtcag
     2521 taatgccgag gcaggctctc cgtggagtgt tagtgggtca cagggccact gagggcttta
     2581 ggtctgacct ttgttttcct tcttgggggc tcttagtgca gacgtaatgt ccagcacgtt
     2641 gttaacccca tggacaaata aagagagcct aaagctctcg tgtgtggttc agccagagtc
     2701 tgaccttagt tgaaaggaca caaatgaaag aagtcagaga tttgtaagtg agacctgcct
     2761 gcactgattt taggcactcc aaaagaacag ggttccattc agaggtcatg gtcctcctat
     2821 tttcttctag ctcagatgag ccacatggct cttagaactt cctcccctga gttcttcccc
     2881 aacattaatg ctctttcctc ccatgtctgt gcaatgctgg tttctcccac aaacaggcta
     2941 taatggattt cccttctctg gggaaaatac tgaaagtggg cgcccagggc gtacggcgcc
     3001 gagcagcaca ggcctatcat ccttgcttca gtgctagcag cat
//
