LOCUS       NM_001107924            2072 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus solute carrier family 35 member A1 (Slc35a1),
            mRNA.
ACCESSION   NM_001107924 XM_001065151 XM_006237996 XM_232884
VERSION     NM_001107924.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2072)
  AUTHORS   Ahuja,S. and Whorton,M.R.
  TITLE     Structural basis for mammalian nucleotide sugar transport
  JOURNAL   Elife 8, e45221 (2019)
   PUBMED   30985278
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000005.1.
            
            On or before Jan 4, 2022 this sequence version replaced
            XM_006237996.4, NM_001107924.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360172.412788.1, FQ213102.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN12840106,
                                           SAMN12840108 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-168               JAXUCZ010000005.1  54044510-54044677   c
            169-346             JAXUCZ010000005.1  54040304-54040481   c
            347-506             JAXUCZ010000005.1  54033560-54033719   c
            507-659             JAXUCZ010000005.1  54033105-54033257   c
            660-726             JAXUCZ010000005.1  54029841-54029907   c
            727-903             JAXUCZ010000005.1  54027542-54027718   c
            904-1038            JAXUCZ010000005.1  54026987-54027121   c
            1039-2072           JAXUCZ010000005.1  54021896-54022929   c
FEATURES             Location/Qualifiers
     source          1..2072
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q21"
     gene            1..2072
                     /gene="Slc35a1"
                     /note="solute carrier family 35 member A1"
                     /db_xref="GeneID:313139"
                     /db_xref="RGD:1311359"
     exon            1..168
                     /gene="Slc35a1"
                     /inference="alignment:Splign:2.1.0"
     CDS             153..1163
                     /gene="Slc35a1"
                     /note="solute carrier family 35 (CMP-sialic acid
                     transporter), member A1; solute carrier family 35
                     (CMP-sialic acid transporter), member 1"
                     /codon_start=1
                     /product="CMP-sialic acid transporter"
                     /protein_id="NP_001101394.2"
                     /db_xref="GeneID:313139"
                     /db_xref="RGD:1311359"
                     /translation="MAPARENVSLFFKLYCLTVMTLVAAAYTIALRYTRTTAEGLYFS
                     TTAVCITEVIKLLISVGLLAKETGSLGRFKASLSENVLGSPKELLKLSVPSLVYAVQN
                     NMAFLALSNLDAAVYQVTYQLKIPCTALCTVLMLNRSLSKLQWISVFMLCGGVTLVQW
                     KPAQATKVVVAQNPLLGFGAIAIAVLCSGFAGVYFEKVLKSSDTSLWVRNIQMYLSGI
                     AVTLAGTYLSDGAEIKEKGFFYGYTYYVWFVIFLASVGGLYTSVVVKYTDNIMKGFSA
                     AAAIVLSTVASVILFGLQITLSFTLGALLVCVSIYLYGLPRQDTTSIQQETTSKERII
                     GV"
     exon            169..346
                     /gene="Slc35a1"
                     /inference="alignment:Splign:2.1.0"
     exon            347..506
                     /gene="Slc35a1"
                     /inference="alignment:Splign:2.1.0"
     exon            507..659
                     /gene="Slc35a1"
                     /inference="alignment:Splign:2.1.0"
     exon            660..726
                     /gene="Slc35a1"
                     /inference="alignment:Splign:2.1.0"
     exon            727..903
                     /gene="Slc35a1"
                     /inference="alignment:Splign:2.1.0"
     exon            904..1038
                     /gene="Slc35a1"
                     /inference="alignment:Splign:2.1.0"
     exon            1039..2072
                     /gene="Slc35a1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aggaccgggt ttcccagact tgtcgctccg cacgccgcgc ggcttccgcc gtagcccctg
       61 cttcctcctc gcgggtctgg tgcggcgggc tctctaggcc ggcgtgtctc tatggccgca
      121 gggccgtcag ttccgcaggc tctctctgca ccatggctcc ggcaagagaa aatgtcagtc
      181 tattcttcaa actatactgc ttgacagtga tgactctggt ggctgccgct tataccatag
      241 ctttaagata tacaaggaca acagcggaag gactctactt ttcaaccaca gccgtgtgca
      301 tcacagaagt tataaagtta ctgataagtg tcggccttct agctaaagaa acaggcagtt
      361 tgggtagatt taaagcctct ttgagtgaaa acgtcttggg gagccctaag gagctgctga
      421 agttaagtgt gccgtcactg gtgtatgctg tgcagaacaa catggctttc ctagctctca
      481 gtaacctgga tgcagcagtg taccaggtga cctatcaact gaagattccc tgcactgctt
      541 tatgtactgt tttaatgtta aatcgatcac tcagcaaact acagtggatt tcggtcttca
      601 tgctgtgtgg tggggtcaca cttgtacagt ggaaaccagc ccaagctaca aaagtcgtgg
      661 tagcgcagaa cccgttgtta ggctttggag ctatagccat tgctgtgctg tgctcgggat
      721 ttgcaggagt ttattttgaa aaagttttaa agagttcaga cacttccctt tgggtgagaa
      781 acattcagat gtatctgtca gggatcgctg tgacattagc tggtacctac ttgtcggatg
      841 gcgctgaaat taaagaaaaa ggatttttct atggctacac gtattatgtc tggtttgtta
      901 tcttccttgc tagtgtggga ggcctctaca cgtcagtggt ggtgaagtac acagacaaca
      961 tcatgaaagg cttctctgcg gccgcagcca ttgttctgtc taccgttgcc tcagtcatac
     1021 tgtttggatt gcagataaca ctttcattta cactgggagc tcttcttgta tgtgtttcca
     1081 tttatctcta tgggttaccc agacaagata ccacatccat tcaacaagaa acaacttcaa
     1141 aagaaagaat cattggtgtg tgatttgaat ctcaagagat tcctataagg actaaactgt
     1201 tgataataaa ttagagcctt aagtcaaccc cagatggtag tttaaacatt gtcaacaaat
     1261 taactgtatg acataagaat caagaagaaa actctgaatg aaatgctaaa acagatttaa
     1321 tttgggtgtg tttggtgtca agttatatta tttcagaatg aaggactttg tgtgtgtgtg
     1381 tgtgtgtgtg tgtgagagag agagagagag agagagagag atagagagat agagagatct
     1441 tgtacataga gcatggaggt gacaatggtg tgtgtgtgtg tgtgtgtttg tgtgtgtgtg
     1501 tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtgat atccacagag catggagaca
     1561 acaatgtagg tcagagcacc aggtgaaact acaatattca agcaacaacg tttaagacag
     1621 tgtctgaggg ttcaagtgcc aaagccgttt ctgtgcacac tgttctgttg ttcaggtact
     1681 gggagaggaa ggtgagcctt cttctccagt ttatggatag tactttgtcc ccatagcagt
     1741 aaaagatctg gcttctctta tggaagtgag gaaggacagt tcggaacact actcagtgtg
     1801 taacttataa aacaggtcta cttcatagct cagacactga cttctaggtg acgactgaga
     1861 acttcagtga tgtatttgtg ccatttactg actggttcct atttctttgc tgtcagctga
     1921 tatacttttc agaaaatttt ataagccgct tttatacttt cttttttata aagtatggtt
     1981 acctgttggg ctctcaattt gtgactttta gtgattttaa aatatttcta taatgttaat
     2041 gaggaaatcc agcaataaac ttatttatat ca
//
