LOCUS       NM_001277279            1913 bp    mRNA    linear   ROD 27-MAR-2024
DEFINITION  Rattus norvegicus solute carrier family 30 member 6 (Slc30a6),
            mRNA.
ACCESSION   NM_001277279
VERSION     NM_001277279.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1913)
  AUTHORS   Falcon-Perez,J.M. and Dell'Angelica,E.C.
  TITLE     Zinc transporter 2 (SLC30A2) can suppress the vesicular zinc defect
            of adaptor protein 3-depleted fibroblasts by promoting zinc
            accumulation in lysosomes
  JOURNAL   Exp Cell Res 313 (7), 1473-1483 (2007)
   PUBMED   17349999
REFERENCE   2  (bases 1 to 1913)
  AUTHORS   Huang,L., Kirschke,C.P. and Gitschier,J.
  TITLE     Functional characterization of a novel mammalian zinc transporter,
            ZnT6
  JOURNAL   J Biol Chem 277 (29), 26389-26395 (2002)
   PUBMED   11997387
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000006.1 and BC167086.1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC167086.1, SRR26360194.1973766.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-33                JAXUCZ010000006.1  26802624-26802656   c
            34-1582             BC167086.1         1-1549
            1583-1913           JAXUCZ010000006.1  26772804-26773134   c
FEATURES             Location/Qualifiers
     source          1..1913
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /map="6q13"
     gene            1..1913
                     /gene="Slc30a6"
                     /note="solute carrier family 30 member 6"
                     /db_xref="GeneID:298786"
                     /db_xref="RGD:1309250"
     exon            1..48
                     /gene="Slc30a6"
                     /inference="alignment:Splign:2.1.0"
     CDS             46..1428
                     /gene="Slc30a6"
                     /note="solute carrier family 30 (zinc transporter), member
                     6"
                     /codon_start=1
                     /product="zinc transporter 6"
                     /protein_id="NP_001264208.1"
                     /db_xref="GeneID:298786"
                     /db_xref="RGD:1309250"
                     /translation="MGTIHLFRKPQRSFFGKLLQEFRLVAADRRSWKILLFGAINVLC
                     TGFLLMWCSSTNSIALTAYTYLTIFDLFSLITCLISYWVMMRRPSAAYSFGFERLEVL
                     AVFASTVLAQLGALFILKESAERFLEQPEIHTGRLLVGTFVALSFNLFTMLSIRNKPF
                     AYVSEAASTSWLQEHVADLSRSLCGIIPGLSSIFLPRMNPFVLIDLAGALALCITYML
                     IEINNYFAVDTASAIAIALMTFGTMYPMSVYSGKVLLQTTPPHVIGQLDKLIREVSTL
                     DGVLEVRNEHFWTLGFGSLAGSVHVRIRRDANEQMVLAHVTNRLCTLVSTLTVQIFKD
                     DWIRPALSSGPVAPNVLNFSDHHIIPMPLLKNNDERTPVTSTPAKPSSPPPEFAFNTP
                     GKNVSPVILLNTQTRPYGLGLNRGHTPYSSMFSQGLAFPGVGAGQGLRPTFPHIPSRY
                     GINRMGQPRP"
     exon            49..135
                     /gene="Slc30a6"
                     /inference="alignment:Splign:2.1.0"
     exon            136..220
                     /gene="Slc30a6"
                     /inference="alignment:Splign:2.1.0"
     exon            221..263
                     /gene="Slc30a6"
                     /inference="alignment:Splign:2.1.0"
     exon            264..329
                     /gene="Slc30a6"
                     /inference="alignment:Splign:2.1.0"
     exon            330..410
                     /gene="Slc30a6"
                     /inference="alignment:Splign:2.1.0"
     exon            411..446
                     /gene="Slc30a6"
                     /inference="alignment:Splign:2.1.0"
     exon            447..541
                     /gene="Slc30a6"
                     /inference="alignment:Splign:2.1.0"
     exon            542..590
                     /gene="Slc30a6"
                     /inference="alignment:Splign:2.1.0"
     exon            591..710
                     /gene="Slc30a6"
                     /inference="alignment:Splign:2.1.0"
     exon            711..813
                     /gene="Slc30a6"
                     /inference="alignment:Splign:2.1.0"
     exon            814..861
                     /gene="Slc30a6"
                     /inference="alignment:Splign:2.1.0"
     exon            862..930
                     /gene="Slc30a6"
                     /inference="alignment:Splign:2.1.0"
     exon            931..1913
                     /gene="Slc30a6"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gaattctcag agcgtcttcc ggcgggagct gtacggctcc ttaccatggg gacgattcat
       61 ctctttcgaa agccacagag atcctttttt ggaaagttac tacaggaatt tagactcgta
      121 gcagctgacc gaaggtcctg gaagatactt ctttttggtg ccatcaacgt gctgtgcact
      181 ggcttcctgc tcatgtggtg cagctctact aacagcatcg ctttaactgc ttatacttac
      241 ctcaccattt ttgatctctt tagtttaatt acatgtttaa taagctactg ggtgatgatg
      301 aggagaccta gcgctgccta ttcgtttggg tttgaaagac tagaagtcct ggctgtattt
      361 gcttctactg tcttggcaca attgggagcc ctctttatac taaaagaaag tgcagaacgc
      421 tttttggagc agcctgagat acacacggga agattattag ttggtacttt tgtggccctt
      481 tctttcaacc tgttcacgat gctttctatt cggaataagc cttttgctta cgtctctgaa
      541 gctgcaagta cgagctggct tcaagagcat gtggcagacc ttagtcgcag cttgtgcggc
      601 attatcccag gactcagcag tatcttcttg ccccgcatga acccgtttgt tctgatcgat
      661 cttgctgggg cgcttgctct gtgtataaca tacatgctga ttgaaattaa taattacttt
      721 gctgtagaca ctgcgtcagc gatcgccatt gccctgatga catttggcac catgtatccc
      781 atgagtgtgt acagtgggaa ggtgcttctc cagacaacac cacctcatgt tattggtcag
      841 ttggataaac tgattagaga ggtgtctacc ttggatgggg tgttagaagt ccgaaacgaa
      901 cacttttgga cccttggatt tggctccttg gctggatcag tgcatgtaag aattcgacga
      961 gatgcaaacg aacaaatggt ccttgctcat gtgaccaaca ggctgtgcac gctggtgtcc
     1021 actctgactg ttcagatctt caaggatgac tggattaggc ctgccctgtc atctgggcct
     1081 gttgcaccca atgtgctaaa cttctcagac caccacataa tcccaatgcc tcttttaaag
     1141 aacaatgatg agaggacccc tgtcacatcc accccagcca agcccagcag cccacctccg
     1201 gagtttgcat ttaatacgcc tgggaaaaat gtgagcccag tcattcttct gaacacacag
     1261 acaaggccat atggtttggg tcttaatcgt ggacacacac catacagcag tatgttcagc
     1321 caaggacttg cgtttccagg agttggagca ggtcagggat tgaggcccac cttcccacat
     1381 ataccaagca ggtacggaat caacaggatg ggacagccaa gaccctgatg gactcttaac
     1441 gtactgttat gggagtgtcg actccttgcc ttccagtgta tttagtcatc cagttgcatt
     1501 gactgttcaa ccacttatgt gtcagattat tccaagcttg ttcatatttc ataaaaccta
     1561 taaactatat ttttgtaaaa cattcttgtg gcagtgaggt ctttgaaacg tcatgggtgt
     1621 gtgtcagata ggtctccttc aagaagtctg aatgccagct gctttgtaac cgccaacgct
     1681 gtgacactct ggccgtgcgg tgggtagatc tgtatcttac tacaaactca taattccttc
     1741 agtacaattt ataaacatgc ttcatgtatg gtgcccatct aaggaaatga aaacattagt
     1801 gtctatttga aaagtaaaat ctcttttata gcttttttaa gcctaattac tgcatttttt
     1861 ttgaggtcct cccgaatcat ttgttaaata aaaagtaaaa gtttctattg gaa
//
