LOCUS       XM_039106603            1856 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus SLC2A4 regulator (Slc2a4rg), mRNA.
ACCESSION   XM_039106603
VERSION     XM_039106603.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio            :: 14% of CDS bases
            frameshifts          :: corrected 4 indels
            internal stop codons :: corrected 3 genomic stop codons
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-10                JACYVU010000123.1  4091708-4091717
            11-213              JACYVU010000123.1  4091920-4092122
            214-295             JACYVU010000123.1  4092862-4092943
            296-354             JACYVU010000123.1  4093351-4093409
            355-355             "N"                1-1
            356-462             JACYVU010000123.1  4093410-4093516
            463-463             "N"                1-1
            464-501             JACYVU010000123.1  4093517-4093554
            502-585             JACYVU010000123.1  4093769-4093852
            586-586             "N"                1-1
            587-670             JACYVU010000123.1  4093853-4093936
            671-720             JACYVU010000123.1  4093989-4094038
            721-819             JACYVU010000123.1  4094216-4094314
            820-821             "NN"               1-2
            822-1856            JACYVU010000123.1  4094315-4095349
FEATURES             Location/Qualifiers
     source          1..1856
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1856
                     /gene="Slc2a4rg"
                     /note="SLC2A4 regulator; The sequence of the model RefSeq
                     transcript was modified relative to its source genomic
                     sequence to represent the inferred CDS: inserted 5 bases
                     in 4 codons; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 ESTs, 1 long SRA read, 1
                     Protein, and 77% coverage of the annotated genomic feature
                     by RNAseq alignments"
                     /db_xref="GeneID:120101713"
                     /db_xref="RGD:41152591"
     CDS             1..879
                     /gene="Slc2a4rg"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 5 bases in 4 codons;
                     substituted 3 bases at 3 genomic stop codons"
                     /codon_start=1
                     /transl_except=(pos:361..363,aa:OTHER)
                     /transl_except=(pos:403..405,aa:OTHER)
                     /transl_except=(pos:862..864,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: SLC2A4 regulator"
                     /protein_id="XP_038962531.1"
                     /db_xref="GeneID:120101713"
                     /db_xref="RGD:41152591"
                     /translation="MASDRVGGPRSTLPPLPSPFQDPSIGGSLVGLEFSKLQEPQTMN
                     PGTLEAKAEASAQLPVPSVHISNASKERLEKVTEAASLSLSTSPLCLGAPAVTFTPVW
                     SFPSESGLEPWKEALVXPXGSYSSSSNSGDWSXDLTSSQSSPSTPSPLLPSEXFLFGE
                     ATLRKRKAEPEQSDGKEDFNDTELDAGMDMLPNVLXSLTPVSPIVSMPLAFFMWSPQL
                     FPVYYTVQLFHRHATVTMPTSQVVKVSADDSPYPPRVSSRKPRVDARRYRKVYGMXDS
                     WCSACGWKKACXQFLD"
ORIGIN      
        1 atggcgtctg atagagtcgg gggtcccagg tccactctcc ccccactccc atccccattt
       61 caggaccctt ctataggtgg cagcctggtg ggcttggagt tctcaaagct gcaggaacct
      121 cagaccatga acccaggaac tttggaagcc aaggctgaag cctcagcgca gctcccagtg
      181 ccttctgtcc acatatccaa tgccagcaaa gagaggctgg aaaaggtcac agaggctgca
      241 agccttagcc tgtctaccag ccccctctgt ttgggggcac cagctgtcac ctttactccc
      301 gtgtggagtt tcccttcaga gtctggcttg gagccctgga aggaagccct ggttncacct
      361 taaggcagct acagcagtag cagcaacagt ggagactgga gctaggacct gaccagcagc
      421 cagtcttctc catccactcc gtcacccctg ctgccctctg aangctttct ttttggggag
      481 gctaccctga gaaaaaggaa ggcagagcca gagcagagcg atggcaagga ggacttcaac
      541 gacacggagc ttgatgctgg tatggacatg ctgcctaatg tgttgnttag cctgactcca
      601 gtgtctccta tagtctccat gccactcgcc ttcttcatgt ggagccccca gctcttccca
      661 gtctattaca ctgtccagct gttccacagg catgccacag tgaccatgcc taccagccaa
      721 gtggtaaagg tctcagctga cgattctcca tacccaccac gtgtctcctc caggaagccc
      781 cgggttgatg ccagaaggta ccggaaagtg tatggcatgn nggactcgtg gtgctcagct
      841 tgtggctgga agaaagcctg ctagcagttc ctggactgag ccaatctgtg atgctactgc
      901 ctggcctctt tctcactcct agcctgaacc tgcagcaaac ctgtggtggg gtgactcctg
      961 gaggggagaa atgattgcat actcaaagcg ccttgagact gcttgttgtc ctttggctgc
     1021 aggggcagtt tgcctccctg tctgtcactt acctacttgt cgaagatgtt gatggaccct
     1081 gtaaagcctg tttaagatgc actttgagag gtatggggag gagtctcgtg cccacacgca
     1141 aggtggtggt tgcaggacct tgagactgac gttcaccatg taatgaagct caggtgtctt
     1201 gtgccttggc cataggagtt gaggagaaaa attaaaaatt gtggagatag gggctaggga
     1261 tttagctcag tggtagagcg cttacctagg aagcgcaagg ccctgggttc ggtccccagc
     1321 tccgaaaaaa agaaccaaaa aaaaaaaaaa attgtggaga ttgtttgttt gtttattttt
     1381 ccagaaacca aggttacctc ccccggggaa agaaatggaa ctaggaggga agcagaaagt
     1441 gaatgataat caaagagcag gcagctgtct ccctccatcc agcagcagat ccaaggaagg
     1501 tactatattc aaaccacaca ggaggcatct gcatggagca gcaatttccc attttattta
     1561 aagtgactgt tttgcaagaa tgtctacact aaatcccatc acagaaagga aacccacagg
     1621 caacctggag cacacctagg cagacaaatg gcaagaacca ctagagaagg taacccttac
     1681 ctgtctgtgg ctatagagag agagcaggac aacagagcag tgaaccccac caactgatta
     1741 tgacaaacct cccacaaata ttgaacacat cttcagtaca aacacagttt ataataatta
     1801 atataaagtc aatataatat agattatccc cagaaaaaaa atcagcaatc ttcaaa
//
